Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU82183 | Sorghum | endoplasmic reticulum, plasma membrane | 90.81 | 66.58 |
| TraesCS1D01G108700.1 | Wheat | nucleus | 66.91 | 51.09 |
| TraesCS1A01G106300.1 | Wheat | nucleus | 66.91 | 51.09 |
| TraesCS1B01G123600.1 | Wheat | nucleus | 66.27 | 50.53 |
| HORVU1Hr1G023350.20 | Barley | cytosol, nucleus, plastid | 66.64 | 48.4 |
| CDY50743 | Canola | nucleus | 28.12 | 37.5 |
| VIT_02s0025g04530.t01 | Wine grape | nucleus | 43.84 | 33.29 |
| KRH27976 | Soybean | nucleus | 41.64 | 31.16 |
| KRH77477 | Soybean | nucleus | 41.64 | 31.09 |
| Solyc08g080210.2.1 | Tomato | nucleus | 33.0 | 29.77 |
| GSMUA_Achr8P12010_001 | Banana | golgi | 45.13 | 29.33 |
| AT1G63020.2 | Thale cress | cytosol, nucleus, plasma membrane | 38.24 | 28.63 |
| CDY32191 | Canola | nucleus | 37.78 | 28.46 |
| CDY49206 | Canola | nucleus | 38.14 | 28.42 |
| Bra027611.1-P | Field mustard | nucleus | 37.68 | 28.41 |
| CDX93859 | Canola | nucleus | 37.68 | 28.33 |
| Zm00001d039307_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 11.95 | 21.78 |
| Zm00001d003203_P003 | Maize | cytosol | 20.31 | 15.85 |
| Zm00001d029055_P010 | Maize | nucleus | 20.22 | 13.02 |
| Zm00001d053872_P021 | Maize | nucleus | 22.52 | 12.57 |
| Zm00001d024583_P003 | Maize | nucleus | 20.96 | 12.32 |
| Os04t0572600-01 | Rice | cytosol | 5.06 | 12.2 |
| HORVU0Hr1G000370.1 | Barley | extracellular | 1.38 | 10.14 |
| CDY68589 | Canola | cytosol | 4.6 | 9.38 |
| Bra041010.1-P | Field mustard | cytosol, plastid | 2.76 | 6.28 |
| Zm00001d031459_P001 | Maize | cytosol | 0.09 | 0.3 |
| Os09t0555200-01 | Rice | cytosol | 0.0 | 0.0 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 | MapMan:15.1.4.1 |
| Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 | UniProt:A0A1D6KIY2 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 |
| InterPro:IPR038120 | ProteinID:ONM02906.1 | PFAM:PF00623 | PFAM:PF04983 | PFAM:PF04997 | PFAM:PF04998 |
| PFAM:PF05000 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF40 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 |
| InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 |
| UniParc:UPI00084511F9 | EnsemblPlantsGene:Zm00001d031457 | EnsemblPlants:Zm00001d031457_P009 | EnsemblPlants:Zm00001d031457_T009 | SEG:seg | : |
Description
DNA-directed RNA polymerase IV subunit 1
Coordinates
chr1:+:190910750..190941915
Molecular Weight (calculated)
122132.0 Da
IEP (calculated)
8.001
GRAVY (calculated)
-0.179
Length
1088 amino acids
Sequence
(BLAST)
(BLAST)
0001: MELHREPPEA ILNAIKFDLM TSTDMEKLSS MSIIEVSDVT SPKLGLPNGS LQCETCGSQR GRDCDGHFGV TKLAATVHNP YFIDDVVHFL NRICPGCLSP
0101: REGIDTKRLE REKVQATCKY CSKDGSKLYP SIVFKTLSSP RVLLFKSKLH RNASVMERIS IVAEAADRMP NRSKGKGSLE GLPLDFWDFV PSENKQVQSN
0201: MTKIILSPYQ VFYMLKKSDP ELIKQFVSRR ELLFLSCLPV TPNCHRVVEI GYGLPDGRLT FDDRTKAYKR MVDVSRRIDD YRQHPHFSVL ASSLVSSRVS
0301: ECLKSSKLYS KKADGETSTD TYGMKWLKDV VLSKRSDNVF RSIMVGDPKI KLWEIGIPED LSSSLVVSEH VSSYNFQSTN LKCNLHLLAK QELFIRRNGK
0401: LMFLRKADQL EIGDIAYRPL QDGDIILINR PPSVHQHSLI ALSAKILPIH SVVSINPLCC TPFAGDFDGD CLHGYIPQSI RSRVELEELV SLHNQLLNMQ
0501: DGRNLVSLTH DSLAAAHLLT STDVFLKKSE LQQLQMLCLS VSTPAPAVIK SMNFQGSLWT GKQLFSMLLP SGMNFSCDTE LHIMDSEVLT CSLGSSWLQN
0601: NTSGLFSVMF KQYGCKALDF LSSAQEVLCE FLTMRGLSVS LSDLYMFSDH YSRRKLAEGV KLALYEAEEA FRVKKILLDP INIPVLKCHD ETEDVTYRQS
0701: DCIQSNPSVI RSSIMAFKDV FRDLLKMVQQ HVSNDNSMMV MINAGSKGSM LKYAQQTACI GLQLPASKFP FRIPSQLSCI SWNGQKSLNY EAESTSERVG
0801: GQNLYAVIKN SFIEGLNPLE CLLHAISGRA NFFSENADVP GTLTRKLMYH LRDIHVAYDG TVRSSYGQQI VQFSYDSVDD LVDKLGAPVG CRAACSISEA
0901: AYGALEHPVN GLEDSPLMNL QEVFKCHKAT NSGDHIGLLF LSRHLKKYRY GLEYASLEVK NHLERVNFSD LVETIMIIYD GHDKIRNEGM WTTHFHINKA
1001: MMKKKRLGLR FVVDELAKEY DTTRDQLNNA IPSIRISRRK CLVGDEGVKS SSCCIAVVAH AERNSISQLD TIKTRVIPSI LDTLLKGC
0101: REGIDTKRLE REKVQATCKY CSKDGSKLYP SIVFKTLSSP RVLLFKSKLH RNASVMERIS IVAEAADRMP NRSKGKGSLE GLPLDFWDFV PSENKQVQSN
0201: MTKIILSPYQ VFYMLKKSDP ELIKQFVSRR ELLFLSCLPV TPNCHRVVEI GYGLPDGRLT FDDRTKAYKR MVDVSRRIDD YRQHPHFSVL ASSLVSSRVS
0301: ECLKSSKLYS KKADGETSTD TYGMKWLKDV VLSKRSDNVF RSIMVGDPKI KLWEIGIPED LSSSLVVSEH VSSYNFQSTN LKCNLHLLAK QELFIRRNGK
0401: LMFLRKADQL EIGDIAYRPL QDGDIILINR PPSVHQHSLI ALSAKILPIH SVVSINPLCC TPFAGDFDGD CLHGYIPQSI RSRVELEELV SLHNQLLNMQ
0501: DGRNLVSLTH DSLAAAHLLT STDVFLKKSE LQQLQMLCLS VSTPAPAVIK SMNFQGSLWT GKQLFSMLLP SGMNFSCDTE LHIMDSEVLT CSLGSSWLQN
0601: NTSGLFSVMF KQYGCKALDF LSSAQEVLCE FLTMRGLSVS LSDLYMFSDH YSRRKLAEGV KLALYEAEEA FRVKKILLDP INIPVLKCHD ETEDVTYRQS
0701: DCIQSNPSVI RSSIMAFKDV FRDLLKMVQQ HVSNDNSMMV MINAGSKGSM LKYAQQTACI GLQLPASKFP FRIPSQLSCI SWNGQKSLNY EAESTSERVG
0801: GQNLYAVIKN SFIEGLNPLE CLLHAISGRA NFFSENADVP GTLTRKLMYH LRDIHVAYDG TVRSSYGQQI VQFSYDSVDD LVDKLGAPVG CRAACSISEA
0901: AYGALEHPVN GLEDSPLMNL QEVFKCHKAT NSGDHIGLLF LSRHLKKYRY GLEYASLEVK NHLERVNFSD LVETIMIIYD GHDKIRNEGM WTTHFHINKA
1001: MMKKKRLGLR FVVDELAKEY DTTRDQLNNA IPSIRISRRK CLVGDEGVKS SSCCIAVVAH AERNSISQLD TIKTRVIPSI LDTLLKGC
0001: MEDDCEELQV PVGTLTSIGF SISNNNDRDK MSVLEVEAPN QVTDSRLGLP NPDSVCRTCG SKDRKVCEGH FGVINFAYSI INPYFLKEVA ALLNKICPGC
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGSRVYYTG RCV
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGSRVYYTG RCV
Arabidopsis Description
NRPD1DNA-directed RNA polymerase IV subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ02]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.