Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 4
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d031457_P009 | Maize | nucleus | 66.58 | 90.81 |
| Zm00001d031459_P001 | Maize | cytosol | 18.26 | 81.63 |
| HORVU0Hr1G000370.1 | Barley | extracellular | 7.61 | 76.35 |
| TraesCS1D01G108700.1 | Wheat | nucleus | 66.04 | 68.77 |
| TraesCS1A01G106300.1 | Wheat | nucleus | 65.9 | 68.63 |
| TraesCS1B01G123600.1 | Wheat | nucleus | 65.43 | 68.04 |
| Os04t0572600-01 | Rice | cytosol | 20.49 | 67.41 |
| Os09t0555200-01 | Rice | cytosol | 14.29 | 66.67 |
| HORVU1Hr1G023350.20 | Barley | cytosol, nucleus, plastid | 65.84 | 65.22 |
| VIT_02s0025g04530.t01 | Wine grape | nucleus | 41.51 | 42.99 |
| Solyc08g080210.2.1 | Tomato | nucleus | 33.09 | 40.71 |
| KRH27976 | Soybean | nucleus | 39.15 | 39.96 |
| GSMUA_Achr8P12010_001 | Banana | golgi | 44.95 | 39.84 |
| KRH77477 | Soybean | nucleus | 38.68 | 39.4 |
| CDX93859 | Canola | nucleus | 36.99 | 37.94 |
| CDY32191 | Canola | nucleus | 36.79 | 37.81 |
| CDY50743 | Canola | nucleus | 20.75 | 37.75 |
| AT1G63020.2 | Thale cress | cytosol, nucleus, plasma membrane | 36.93 | 37.72 |
| CDY49206 | Canola | nucleus | 37.06 | 37.67 |
| Bra027611.1-P | Field mustard | nucleus | 36.59 | 37.63 |
| Bra041010.1-P | Field mustard | cytosol, plastid | 11.12 | 34.52 |
| CDY68589 | Canola | cytosol | 12.33 | 34.33 |
| EES11045 | Sorghum | nucleus | 17.52 | 18.69 |
| KXG34194 | Sorghum | nucleus | 19.2 | 18.07 |
| OQU84386 | Sorghum | nucleus | 22.04 | 16.23 |
| EES13372 | Sorghum | nucleus | 18.46 | 14.76 |
| KXG22455 | Sorghum | nucleus | 16.78 | 14.38 |
| EES08565 | Sorghum | nucleus | 17.92 | 14.16 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 | MapMan:15.1.4.1 |
| Gene3D:2.40.40.20 | Gene3D:3.10.450.40 | Gene3D:3.30.1490.180 | UniProt:A0A1Z5REK7 | GO:GO:0000418 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0010495 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016740 | GO:GO:0016779 | GO:GO:0030422 | GO:GO:0031047 | GO:GO:0040029 |
| InterPro:IPR038120 | EnsemblPlants:OQU82183 | ProteinID:OQU82183 | ProteinID:OQU82183.1 | PFAM:PF00623 | PFAM:PF04983 |
| PFAM:PF04997 | PFAM:PF04998 | PFAM:PF05000 | PFAM:PF11523 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF40 |
| InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu |
| InterPro:Rpb1_funnel_sf | SMART:SM00663 | EnsemblPlantsGene:SORBI_3006G185200 | SUPFAM:SSF64484 | TMHMM:TMhelix | UniParc:UPI000B8BB2D9 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr6:+:54032512..54048209
Molecular Weight (calculated)
166563.0 Da
IEP (calculated)
7.885
GRAVY (calculated)
-0.207
Length
1484 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSYSELCCTS CCYTNIYGLL FLLFGFYFSQ NELFAMRLLC RMELHRELPE ATLNAIKFDL MTSTDMEKLS SMSVIEVSDV TSPKLGLPNA SPQCETCGSK
0101: SGRDCDGHFG VTKLAATVHN PYFIDDVVHF LNQICPGCLS PREGINMKRL GRETVQATST CKYCSKDGSK LYPSVIFKTL SSPRVLLSKS KLHRSPSVME
0201: RISIVAEAAE RVSNRSKGKG LLEGLPQDYW DFVPSENKQV QSNMTKIILS PYQVFHMLKK SDPELIKQFV SRRELLFLSC LPVTPNCHRV VEIGYGLSDG
0301: RVTFDDRTKA YKRMVDVSRR IDDYRQHPQF SVLASSLVSG RVSECLKSSK LYSKKTDGET STDPSGMKWL KDAVLSKRSD NAFRSTMVGD PKIKLWEIGI
0401: PEDLASNLVV SDHVNSYNFE NINLKCNLHL LTKEELFIRR NGKLMFLRKA DQLEIGDIAY RPLQDGDLIL INRPPSVHQH SLIAFSAKIL PIHSVVSINP
0501: LCCTPFLGDF DGDCLHGYIP QSVRSRIELG ELVSLHHQLL NMQDGRSLVS LTHDSLAAAH LLTSTDVFLK KSEFQQLQML CLSVLTPVPA VIKSMNFQGS
0601: RWTGKQLFSM LLPSGMKFSC DRMLHILNGE VLTCSLGSSW LQNNTSGLFS VMFKQYGCKA LDFLSSAQEV LCEFLTMRGL SVSLSDMFSD HYSRRKLTEG
0701: VKLALDEAEE AFRIKQILLD PINIPVLKCQ DETEDVTYRQ SDCIQNNPSV IRSSIMAFKD VFSDLLKMVQ QHVSNDNSMM VMINAGSKGS MLKYAQQTAC
0801: VGLQLPASKF PFRVPSQLSC IRWNRQKSLN YEAEGTNERV GGQNLYAVIR NSFIEGLNPL ECLLHAISGR ANFFSENADV PGTLTRKLMY HLRDIHVAYD
0901: GTVRSSYGQQ IVQFSYDSAD DPVDKLGAPV GCWAACSISE AAYGALEHPV NGLEDSPLMN LQEVFKCHKA TNSGDHIGLL FLSRHLKKYR YGLEYASLEV
1001: KNHLEQVNFS DLVETIMIIY DGHDKIRKEG TWTTHFHISK EMMKKKRLGL RFVIEELTKE YNATRDQLKN AIPSICISRR KCVVGDEGVK ISACCIAVVA
1101: LAEPNSMSQL DTIKKRVIPI ILDTLLKGFL EFKDVEIQCQ HDGELLVKVC MSHHCKGGRF WATLQNACIP VMELIDWELS RPSNVADIFC SYGIDSAWKY
1201: FVESLKSATT DIGRNIRREH LLVIADSMSV TGQFHAISSH GLKQQRTRLS ISSPFSEACF SRPAQSFIDA AKQCSVDNLC GSLDAIAWGK EPFNGTSGPF
1301: EIMHSGKPHE PEQDESIYDF LRSPKVQNVE KNHLDTRRQS TENASICRLA CKSKGSATVN GVAITSDQDF LHAKVSIWDN IIDMRASLQN MLREYPLNGY
1401: VMEPDKSKLI EALKFHPRGA EKIGVGVREI KVGLNPNHPG TRCFILLRND DTTEDFSYHK CVHGAANSIS PQLGSYLKKL YHRA
0101: SGRDCDGHFG VTKLAATVHN PYFIDDVVHF LNQICPGCLS PREGINMKRL GRETVQATST CKYCSKDGSK LYPSVIFKTL SSPRVLLSKS KLHRSPSVME
0201: RISIVAEAAE RVSNRSKGKG LLEGLPQDYW DFVPSENKQV QSNMTKIILS PYQVFHMLKK SDPELIKQFV SRRELLFLSC LPVTPNCHRV VEIGYGLSDG
0301: RVTFDDRTKA YKRMVDVSRR IDDYRQHPQF SVLASSLVSG RVSECLKSSK LYSKKTDGET STDPSGMKWL KDAVLSKRSD NAFRSTMVGD PKIKLWEIGI
0401: PEDLASNLVV SDHVNSYNFE NINLKCNLHL LTKEELFIRR NGKLMFLRKA DQLEIGDIAY RPLQDGDLIL INRPPSVHQH SLIAFSAKIL PIHSVVSINP
0501: LCCTPFLGDF DGDCLHGYIP QSVRSRIELG ELVSLHHQLL NMQDGRSLVS LTHDSLAAAH LLTSTDVFLK KSEFQQLQML CLSVLTPVPA VIKSMNFQGS
0601: RWTGKQLFSM LLPSGMKFSC DRMLHILNGE VLTCSLGSSW LQNNTSGLFS VMFKQYGCKA LDFLSSAQEV LCEFLTMRGL SVSLSDMFSD HYSRRKLTEG
0701: VKLALDEAEE AFRIKQILLD PINIPVLKCQ DETEDVTYRQ SDCIQNNPSV IRSSIMAFKD VFSDLLKMVQ QHVSNDNSMM VMINAGSKGS MLKYAQQTAC
0801: VGLQLPASKF PFRVPSQLSC IRWNRQKSLN YEAEGTNERV GGQNLYAVIR NSFIEGLNPL ECLLHAISGR ANFFSENADV PGTLTRKLMY HLRDIHVAYD
0901: GTVRSSYGQQ IVQFSYDSAD DPVDKLGAPV GCWAACSISE AAYGALEHPV NGLEDSPLMN LQEVFKCHKA TNSGDHIGLL FLSRHLKKYR YGLEYASLEV
1001: KNHLEQVNFS DLVETIMIIY DGHDKIRKEG TWTTHFHISK EMMKKKRLGL RFVIEELTKE YNATRDQLKN AIPSICISRR KCVVGDEGVK ISACCIAVVA
1101: LAEPNSMSQL DTIKKRVIPI ILDTLLKGFL EFKDVEIQCQ HDGELLVKVC MSHHCKGGRF WATLQNACIP VMELIDWELS RPSNVADIFC SYGIDSAWKY
1201: FVESLKSATT DIGRNIRREH LLVIADSMSV TGQFHAISSH GLKQQRTRLS ISSPFSEACF SRPAQSFIDA AKQCSVDNLC GSLDAIAWGK EPFNGTSGPF
1301: EIMHSGKPHE PEQDESIYDF LRSPKVQNVE KNHLDTRRQS TENASICRLA CKSKGSATVN GVAITSDQDF LHAKVSIWDN IIDMRASLQN MLREYPLNGY
1401: VMEPDKSKLI EALKFHPRGA EKIGVGVREI KVGLNPNHPG TRCFILLRND DTTEDFSYHK CVHGAANSIS PQLGSYLKKL YHRA
0001: MEDDCEELQV PVGTLTSIGF SISNNNDRDK MSVLEVEAPN QVTDSRLGLP NPDSVCRTCG SKDRKVCEGH FGVINFAYSI INPYFLKEVA ALLNKICPGC
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
Arabidopsis Description
NRPD1DNA-directed RNA polymerase IV subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ02]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.