Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra041010.1-P | Field mustard | cytosol, plastid | 32.96 | 99.58 |
| CDX93859 | Canola | nucleus | 96.61 | 96.41 |
| CDY68589 | Canola | cytosol | 33.45 | 90.62 |
| CDY49206 | Canola | nucleus | 89.47 | 88.49 |
| CDY50743 | Canola | nucleus | 49.45 | 87.5 |
| AT1G63020.2 | Thale cress | cytosol, nucleus, plasma membrane | 80.54 | 80.04 |
| VIT_02s0025g04530.t01 | Wine grape | nucleus | 51.32 | 51.71 |
| KRH27976 | Soybean | nucleus | 49.1 | 48.76 |
| KRH77477 | Soybean | nucleus | 48.41 | 47.98 |
| Solyc08g080210.2.1 | Tomato | nucleus | 39.06 | 46.77 |
| HORVU0Hr1G000370.1 | Barley | extracellular | 4.16 | 40.54 |
| Zm00001d031457_P009 | Maize | nucleus | 28.46 | 37.78 |
| TraesCS1D01G108700.1 | Wheat | nucleus | 36.36 | 36.84 |
| OQU82183 | Sorghum | endoplasmic reticulum, plasma membrane | 37.81 | 36.79 |
| TraesCS1A01G106300.1 | Wheat | nucleus | 36.29 | 36.77 |
| TraesCS1B01G123600.1 | Wheat | nucleus | 35.73 | 36.16 |
| HORVU1Hr1G023350.20 | Barley | cytosol, nucleus, plastid | 36.15 | 34.85 |
| Os09t0555200-01 | Rice | cytosol | 7.48 | 33.96 |
| Os04t0572600-01 | Rice | cytosol | 10.11 | 32.37 |
| Zm00001d031459_P001 | Maize | cytosol | 7.27 | 31.63 |
| GSMUA_Achr8P12010_001 | Banana | golgi | 35.11 | 30.29 |
| CDY09230 | Canola | nucleus | 18.42 | 19.42 |
| CDY60335 | Canola | nucleus | 22.44 | 17.34 |
| CDY65462 | Canola | nucleus | 3.88 | 15.64 |
| CDY06084 | Canola | nucleus | 15.86 | 15.06 |
| CDX72007 | Canola | nucleus | 16.0 | 15.05 |
| CDX67702 | Canola | nucleus | 15.72 | 15.04 |
| CDY71816 | Canola | cytosol | 2.91 | 14.74 |
| CDY65464 | Canola | nucleus | 9.42 | 14.51 |
| CDY08876 | Canola | nucleus | 15.44 | 13.77 |
| CDX69166 | Canola | cytosol | 18.77 | 10.27 |
| CDX75527 | Canola | nucleus | 18.84 | 10.01 |
| CDY07630 | Canola | nucleus | 15.72 | 9.9 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 | MapMan:15.1.4.1 |
| Gene3D:2.40.40.20 | Gene3D:3.10.450.40 | Gene3D:3.30.1490.180 | GO:A0A078H322 | UniProt:A0A078H322 | EnsemblPlants:CDY32191 |
| ProteinID:CDY32191 | ProteinID:CDY32191.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 | EnsemblPlantsGene:GSBRNA2T00051588001 |
| InterPro:IPR038120 | PFAM:PF00623 | PFAM:PF04983 | PFAM:PF04997 | PFAM:PF05000 | PFAM:PF11523 |
| PANTHER:PTHR19376 | PANTHER:PTHR19376:SF40 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 |
| InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 | UniParc:UPI0004EF11B9 | SEG:seg |
Description
BnaA03g54760DDNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A078H322]
Coordinates
chrLK032289:+:21150..27156
Molecular Weight (calculated)
161839.0 Da
IEP (calculated)
7.790
GRAVY (calculated)
-0.299
Length
1444 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEEECEELQV PMGILKSIRF SISNNKDRKN MAVMDVEAAN QVTDSRLGLP NPDSICRSCG SKDRKVCEGH FGVINLKYPV INPYFLKEIA TLLNRICPGC
0101: KYMRKKQSQS SEDRPERCRY CTSNTGYPLM RFRVTTKEVF RRSGIVCEVS EDNLFKLSKR GLSSLPPDYW EFLPKDSNID ESCLKPSRRI LTHAQVYALL
0201: CGIDERLIRK DIPMFDSLPL TSFPVTPNGH RVSEMVNQFT GARLIFDERT RIYKKLVGFE GNGLELSARV IECMQYSRLF SENMSPSQES ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TLRTVVVGDP CLKLNEIGIP RRIAERLQVS ENLNDWNRER LVTSCFHKLL ERGETHVRRG GSLVAIRVIE DLQTGDSILR
0401: TLKDGDTVLM NRPPSIHQHS LIAMSVKVLP TTSVVSLNPI CCLPFRGDFD GDCLHGYVPQ SIQAKVELDE LVALDKQLVN RQNGRNLLSL GQDSLTAAYL
0501: VSVETNCFLN RAQMQQLQMY CPFELPPPAI IKASSSEAQW TGMQLFGMLL PPGFEYTYPL NDVVVSNGGL LSSSDGSGWL RDGEGNFIQG LLKEHKEKVL
0601: DIMYSTQEMF SQELQMRGLS VSLADLYLAS DPESRRNLTE EISYGLQEAE QVCNKQQLMV ESRRDFLAGN VEDMAADLDR FCYERQRSAT LSKLAVNAFK
0701: DAYRDVQSLA YRYAAESNSF LIMSKAGSKG NMGKLAQHSM CIGLQNSSVA LSFGFPRQLT CASWNDPNSP LRGAKRQDQT GHESFVPFAV IENSFLTGLN
0801: PLESFVHSVT SRDSSFSGNA DIPGALNRKL MFFMRDIYAA YDGTVRNSFG NHLVQFHYET EEDITGEAVG SLSACALTEA AYSALDQPIS LLETSPLLNL
0901: KNVLECGSKK GLKEQTMSLY LSETLSKKKH GFEFGALDIK SHLEKLSFSE IVSTSMIIFS PRTNTKMPMS SWVCHFHISK KVLKQKQLDV ESVVSSLNKQ
1001: YANRKKELKL DVIDLEIQST NHCSWDDKSM EDDRFCITVT VLEASTHGSL ELDAIRLVLI PFLLDSPVKG YGEIKKVEIL WADRPKAPKR NKKHMAGELF
1101: VKVTMHGVRG KKNIWSALLE TCLPIMDMID WTRSHPDNIR QCCSVYGIDA GRSIFLADLE SAVADTGKGM LREHLLLVAD CLSVTGEFVA LNPKGWSKQR
1201: QAESTPAPFT QACFSSPSQC FLKAAKEGVT DELQGSIDAL AWGKVPSFGT GDQFEIIISP KDHGFSSTPV DVYDFLSSTA TLPKRKASSL PKSDNFTVQP
1301: FPLLDTALSK AVKTLDGKGL TRSQLRTIFT WDDIEKLSRS LKRILYNYEI DATLNERDER LLMMALLFHP NRDEKLGPGF RGIKVANSKH GNARCFEVVR
1401: TDGTTEDFSY HKCVLGATEI IAPKRVNFYK AKYLRNGTVQ AGAI
0101: KYMRKKQSQS SEDRPERCRY CTSNTGYPLM RFRVTTKEVF RRSGIVCEVS EDNLFKLSKR GLSSLPPDYW EFLPKDSNID ESCLKPSRRI LTHAQVYALL
0201: CGIDERLIRK DIPMFDSLPL TSFPVTPNGH RVSEMVNQFT GARLIFDERT RIYKKLVGFE GNGLELSARV IECMQYSRLF SENMSPSQES ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TLRTVVVGDP CLKLNEIGIP RRIAERLQVS ENLNDWNRER LVTSCFHKLL ERGETHVRRG GSLVAIRVIE DLQTGDSILR
0401: TLKDGDTVLM NRPPSIHQHS LIAMSVKVLP TTSVVSLNPI CCLPFRGDFD GDCLHGYVPQ SIQAKVELDE LVALDKQLVN RQNGRNLLSL GQDSLTAAYL
0501: VSVETNCFLN RAQMQQLQMY CPFELPPPAI IKASSSEAQW TGMQLFGMLL PPGFEYTYPL NDVVVSNGGL LSSSDGSGWL RDGEGNFIQG LLKEHKEKVL
0601: DIMYSTQEMF SQELQMRGLS VSLADLYLAS DPESRRNLTE EISYGLQEAE QVCNKQQLMV ESRRDFLAGN VEDMAADLDR FCYERQRSAT LSKLAVNAFK
0701: DAYRDVQSLA YRYAAESNSF LIMSKAGSKG NMGKLAQHSM CIGLQNSSVA LSFGFPRQLT CASWNDPNSP LRGAKRQDQT GHESFVPFAV IENSFLTGLN
0801: PLESFVHSVT SRDSSFSGNA DIPGALNRKL MFFMRDIYAA YDGTVRNSFG NHLVQFHYET EEDITGEAVG SLSACALTEA AYSALDQPIS LLETSPLLNL
0901: KNVLECGSKK GLKEQTMSLY LSETLSKKKH GFEFGALDIK SHLEKLSFSE IVSTSMIIFS PRTNTKMPMS SWVCHFHISK KVLKQKQLDV ESVVSSLNKQ
1001: YANRKKELKL DVIDLEIQST NHCSWDDKSM EDDRFCITVT VLEASTHGSL ELDAIRLVLI PFLLDSPVKG YGEIKKVEIL WADRPKAPKR NKKHMAGELF
1101: VKVTMHGVRG KKNIWSALLE TCLPIMDMID WTRSHPDNIR QCCSVYGIDA GRSIFLADLE SAVADTGKGM LREHLLLVAD CLSVTGEFVA LNPKGWSKQR
1201: QAESTPAPFT QACFSSPSQC FLKAAKEGVT DELQGSIDAL AWGKVPSFGT GDQFEIIISP KDHGFSSTPV DVYDFLSSTA TLPKRKASSL PKSDNFTVQP
1301: FPLLDTALSK AVKTLDGKGL TRSQLRTIFT WDDIEKLSRS LKRILYNYEI DATLNERDER LLMMALLFHP NRDEKLGPGF RGIKVANSKH GNARCFEVVR
1401: TDGTTEDFSY HKCVLGATEI IAPKRVNFYK AKYLRNGTVQ AGAI
0001: MEDDCEELQV PVGTLTSIGF SISNNNDRDK MSVLEVEAPN QVTDSRLGLP NPDSVCRTCG SKDRKVCEGH FGVINFAYSI INPYFLKEVA ALLNKICPGC
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGWSKQRQV ESTPAPFTQA CFSSPSQCFL KAAKEGVRDD LQGSIDALAW GKVPGFGTGD QFEIIISPKV HGFTTPVDVY DLLSSTKTMR RTNSAPKSDK
1301: ATVQPFGLLH SAFLKDIKVL DGKGIPMSLL RTIFTWKNIE LLSQSLKRIL HSYEINELLN ERDEGLVKMV LQLHPNSVEK IGPGVKGIRV AKSKHGDSCC
1401: FEVVRIDGTF EDFSYHKCVL GATKIIAPKK MNFYKSKYLK NGTLESGGFS ENP
Arabidopsis Description
NRPD1DNA-directed RNA polymerase IV subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ02]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.