Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- nucleus 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G000370.1 | Barley | extracellular | 9.88 | 100.0 |
| TraesCS1D01G108700.1 | Wheat | nucleus | 90.39 | 95.02 |
| TraesCS1A01G106300.1 | Wheat | nucleus | 90.32 | 94.95 |
| TraesCS1B01G123600.1 | Wheat | nucleus | 89.85 | 94.32 |
| Os09t0555200-01 | Rice | cytosol | 14.29 | 67.3 |
| Zm00001d031457_P009 | Maize | nucleus | 48.4 | 66.64 |
| Os04t0572600-01 | Rice | cytosol | 19.96 | 66.3 |
| OQU82183 | Sorghum | endoplasmic reticulum, plasma membrane | 65.22 | 65.84 |
| Zm00001d031459_P001 | Maize | cytosol | 13.15 | 59.34 |
| VIT_02s0025g04530.t01 | Wine grape | nucleus | 39.65 | 41.45 |
| Solyc08g080210.2.1 | Tomato | nucleus | 31.84 | 39.55 |
| KRH27976 | Soybean | nucleus | 37.25 | 38.38 |
| KRH77477 | Soybean | nucleus | 37.18 | 38.23 |
| GSMUA_Achr8P12010_001 | Banana | golgi | 42.66 | 38.17 |
| AT1G63020.2 | Thale cress | cytosol, nucleus, plasma membrane | 35.58 | 36.68 |
| Bra027611.1-P | Field mustard | nucleus | 35.11 | 36.45 |
| CDY49206 | Canola | nucleus | 35.38 | 36.3 |
| CDX93859 | Canola | nucleus | 35.05 | 36.28 |
| CDY32191 | Canola | nucleus | 34.85 | 36.15 |
| CDY50743 | Canola | nucleus | 19.56 | 35.91 |
| Bra041010.1-P | Field mustard | cytosol, plastid | 10.75 | 33.68 |
| CDY68589 | Canola | cytosol | 11.75 | 33.02 |
| HORVU5Hr1G082550.1 | Barley | cytosol, nucleus | 3.81 | 26.27 |
| HORVU7Hr1G011970.1 | Barley | mitochondrion, nucleus | 3.81 | 25.0 |
| HORVU7Hr1G032760.1 | Barley | cytosol | 5.94 | 23.42 |
| HORVU5Hr1G114340.1 | Barley | nucleus | 11.88 | 20.6 |
| HORVU7Hr1G037130.2 | Barley | nucleus | 11.75 | 19.34 |
| HORVU3Hr1G013150.1 | Barley | nucleus | 1.87 | 18.92 |
| HORVU1Hr1G025160.5 | Barley | cytosol | 9.48 | 18.61 |
| HORVU3Hr1G112670.15 | Barley | nucleus | 15.82 | 18.5 |
| HORVU1Hr1G040070.1 | Barley | mitochondrion | 1.8 | 18.24 |
| HORVU0Hr1G014220.1 | Barley | cytosol | 1.2 | 18.0 |
| HORVU6Hr1G082430.1 | Barley | cytosol | 1.87 | 17.39 |
| HORVU6Hr1G027050.1 | Barley | nucleus | 16.15 | 16.98 |
| HORVU6Hr1G022890.1 | Barley | nucleus | 21.96 | 16.68 |
| HORVU5Hr1G114400.2 | Barley | nucleus | 17.42 | 14.65 |
| HORVU5Hr1G117770.4 | Barley | nucleus, plastid | 16.49 | 13.89 |
| HORVU2Hr1G126750.3 | Barley | nucleus | 17.16 | 13.58 |
| HORVU5Hr1G114350.1 | Barley | mitochondrion | 2.27 | 12.06 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 | MapMan:15.1.4.1 |
| Gene3D:2.40.40.20 | Gene3D:3.10.450.40 | Gene3D:3.30.1490.180 | UniProt:A0A287EX91 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 |
| EnsemblPlantsGene:HORVU1Hr1G023350 | EnsemblPlants:HORVU1Hr1G023350.20 | InterPro:IPR038120 | PFAM:PF00623 | PFAM:PF04983 | PFAM:PF04997 |
| PFAM:PF05000 | PFAM:PF11523 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF40 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 |
| InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 |
| UniParc:UPI000B47048E | : | : | : | : | : |
Description
DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A287EX91]
Coordinates
chrchr1H:-:102343051..102354694
Molecular Weight (calculated)
166651.0 Da
IEP (calculated)
6.954
GRAVY (calculated)
-0.204
Length
1498 amino acids
Sequence
(BLAST)
(BLAST)
0001: GSAISCPILY ECSRLRCDSC FLSNACRSLL FHQTISSCIN DLDSIPFRMP SSTSVGMTFS MFSFCRMEEP NAEVGIPTVE LRGITFDLMT NTEMEKSSSA
0101: SIVEPSDVTS AKLGLPNGAP QCETCGAQTV RECDGHSGVI KLPATVLNPH LFEEVVQLLN QTCPGCHTPK QNRDSKRSNG ATSQATCKYC SKDGTKQYPD
0201: VIFKALTSPR ITLSKAKVQH DYNFMDKISI TAEVAGRVTD KSNNNGSCEV LPLDYWDFVP HHHPPQSNMT KILLSPYQVS HILEQLDPEL FSRFASRLEL
0301: IFLSCLPVTP NFHRVAELPY GFSDGPRLAY DDLTKAYKRT IDVGRKLDDL RQHPQFSVFA SSLVTSRVVE CLKLSKLHSK KTDKESSTDT HGMKWLKDAI
0401: LSKRSDNAFR GTMVGDPKIR LHEIGIPVDL ASNLVVSEHV NSYNFDSINS KCNHYLLANE VLVIKRSGKT ILVRKPNQLV IGDTVHRLLQ DGDLILINRP
0501: PSVHQHSLIG LSAKLLPIQS VLSINPLCCA PLAGDFDGDC LHGYVPQSIQ SRVELGELVS LSHQLLNAQD GRSLVSLTHD SLAAAYLLTS SEVLLKKTEI
0601: QQFQMLLHPL SPTPGPAIMK SIHSHGPLWT GKQLFSMLLP SDMSFSIESK VHIIDGEVLA CPSESFWLQN SISGLFSFMF KQYGDTALEL LSSAQDVLCE
0701: FLTMRGLSVS LSDIYLFPDH DSRRKLADGV NLALDDAEEA FRIKQILLSP DSIPILKCYD DCADLSQSYE QSDFIQSNLP IIKSSIMAFK SVFSDLQKMV
0801: QQHTARNNSM MIMTNAGSKG SMLKFVQQTA CVGLQLPASR FPFRIPSELS CASWNRHKSE GRGECLGGQN LYAVIRNSFA GGLNPLECLL HSISGRANFF
0901: SENADVPGTL TRKLMYHLRD LYVAYDGTVR SSYGQQIMQF TYDTAEDMCS DRNLEGELGA PVGSWAACSI SEAAYGALDH PVNSLEESPL MNLQDVLKCQ
1001: KGGTSMDHVG LLFLSKNLKK YRYGLEYASL EVKDYLEPVN FSDLVDTVMV LHGGCQSTKG SPWTTHFHLS QEMMTRKRLG LRLVVEELTE QYNAKRDKLN
1101: DVIPKVYISK GKCSADNECS NRQICCITVV TQDESNSMSQ LDTIKKKVIP NLLALLVKGF LEFKKVEIQC QEDRELVVKV VMSEDHCKSV KFWATLQKSC
1201: IAIMELIDWE RSRPGSVYDI FCSYGIDSAW KYFVESLRSK TDDIGRNIRR EHLLVVANCL SVSGQFHGLS SQGLKQQRTR LSISSPFSEA CFSRPAHTFI
1301: NAAKKSTVDN LCGTVDAMAW GKEPSTGTSG PFRIMYSGKA HAPIPNENIY DFLHSPEVRQ APGDAFLNGS TISVEQDFLV ATVGIWDNII DMRTCLQNML
1401: REYQLNECVG ELDKSRVIEA LRFHPRGHEK IGAGIRDIKI GHHPSHPGTR CFIMVRDDGT TEDFSYKKCV QGAADSISPE LGRYIERILR NRAVSSQC
0101: SIVEPSDVTS AKLGLPNGAP QCETCGAQTV RECDGHSGVI KLPATVLNPH LFEEVVQLLN QTCPGCHTPK QNRDSKRSNG ATSQATCKYC SKDGTKQYPD
0201: VIFKALTSPR ITLSKAKVQH DYNFMDKISI TAEVAGRVTD KSNNNGSCEV LPLDYWDFVP HHHPPQSNMT KILLSPYQVS HILEQLDPEL FSRFASRLEL
0301: IFLSCLPVTP NFHRVAELPY GFSDGPRLAY DDLTKAYKRT IDVGRKLDDL RQHPQFSVFA SSLVTSRVVE CLKLSKLHSK KTDKESSTDT HGMKWLKDAI
0401: LSKRSDNAFR GTMVGDPKIR LHEIGIPVDL ASNLVVSEHV NSYNFDSINS KCNHYLLANE VLVIKRSGKT ILVRKPNQLV IGDTVHRLLQ DGDLILINRP
0501: PSVHQHSLIG LSAKLLPIQS VLSINPLCCA PLAGDFDGDC LHGYVPQSIQ SRVELGELVS LSHQLLNAQD GRSLVSLTHD SLAAAYLLTS SEVLLKKTEI
0601: QQFQMLLHPL SPTPGPAIMK SIHSHGPLWT GKQLFSMLLP SDMSFSIESK VHIIDGEVLA CPSESFWLQN SISGLFSFMF KQYGDTALEL LSSAQDVLCE
0701: FLTMRGLSVS LSDIYLFPDH DSRRKLADGV NLALDDAEEA FRIKQILLSP DSIPILKCYD DCADLSQSYE QSDFIQSNLP IIKSSIMAFK SVFSDLQKMV
0801: QQHTARNNSM MIMTNAGSKG SMLKFVQQTA CVGLQLPASR FPFRIPSELS CASWNRHKSE GRGECLGGQN LYAVIRNSFA GGLNPLECLL HSISGRANFF
0901: SENADVPGTL TRKLMYHLRD LYVAYDGTVR SSYGQQIMQF TYDTAEDMCS DRNLEGELGA PVGSWAACSI SEAAYGALDH PVNSLEESPL MNLQDVLKCQ
1001: KGGTSMDHVG LLFLSKNLKK YRYGLEYASL EVKDYLEPVN FSDLVDTVMV LHGGCQSTKG SPWTTHFHLS QEMMTRKRLG LRLVVEELTE QYNAKRDKLN
1101: DVIPKVYISK GKCSADNECS NRQICCITVV TQDESNSMSQ LDTIKKKVIP NLLALLVKGF LEFKKVEIQC QEDRELVVKV VMSEDHCKSV KFWATLQKSC
1201: IAIMELIDWE RSRPGSVYDI FCSYGIDSAW KYFVESLRSK TDDIGRNIRR EHLLVVANCL SVSGQFHGLS SQGLKQQRTR LSISSPFSEA CFSRPAHTFI
1301: NAAKKSTVDN LCGTVDAMAW GKEPSTGTSG PFRIMYSGKA HAPIPNENIY DFLHSPEVRQ APGDAFLNGS TISVEQDFLV ATVGIWDNII DMRTCLQNML
1401: REYQLNECVG ELDKSRVIEA LRFHPRGHEK IGAGIRDIKI GHHPSHPGTR CFIMVRDDGT TEDFSYKKCV QGAADSISPE LGRYIERILR NRAVSSQC
0001: MEDDCEELQV PVGTLTSIGF SISNNNDRDK MSVLEVEAPN QVTDSRLGLP NPDSVCRTCG SKDRKVCEGH FGVINFAYSI INPYFLKEVA ALLNKICPGC
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGSRVYYTG RCV
0101: KYIRKKQFQI TEDQPERCRY CTLNTGYPLM KFRVTTKEVF RRSGIVVEVN EESLMKLKKR GVLTLPPDYW SFLPQDSNID ESCLKPTRRI ITHAQVYALL
0201: LGIDQRLIKK DIPMFNSLGL TSFPVTPNGY RVTEIVHQFN GARLIFDERT RIYKKLVGFE GNTLELSSRV MECMQYSRLF SETVSSSKDS ANPYQKKSDT
0301: PKLCGLRFMK DVLLGKRSDH TFRTVVVGDP SLKLNEIGIP ESIAKRLQVS EHLNQCNKER LVTSFVPTLL DNKEMHVRRG DRLVAIQVND LQTGDKIFRS
0401: LMDGDTVLMN RPPSIHQHSL IAMTVRILPT TSVVSLNPIC CLPFRGDFDG DCLHGYVPQS IQAKVELDEL VALDKQLINR QNGRNLLSLG QDSLTAAYLV
0501: NVEKNCYLNR AQMQQLQMYC PFQLPPPAII KASPSSTEPQ WTGMQLFGML FPPGFDYTYP LNNVVVSNGE LLSFSEGSAW LRDGEGNFIE RLLKHDKGKV
0601: LDIIYSAQEM LSQWLLMRGL SVSLADLYLS SDLQSRKNLT EEISYGLREA EQVCNKQQLM VESWRDFLAV NGEDKEEDSV SDLARFCYER QKSATLSELA
0701: VSAFKDAYRD VQALAYRYGD QSNSFLIMSK AGSKGNIGKL VQHSMCIGLQ NSAVSLSFGF PRELTCAAWN DPNSPLRGAK GKDSTTTESY VPYGVIENSF
0801: LTGLNPLESF VHSVTSRDSS FSGNADLPGT LSRRLMFFMR DIYAAYDGTV RNSFGNQLVQ FTYETDGPVE DITGEALGSL SACALSEAAY SALDQPISLL
0901: ETSPLLNLKN VLECGSKKGQ REQTMSLYLS EYLSKKKHGF EYGSLEIKNH LEKLSFSEIV STSMIIFSPS SNTKVPLSPW VCHFHISEKV LKRKQLSAES
1001: VVSSLNEQYK SRNRELKLDI VDLDIQNTNH CSSDDQAMKD DNVCITVTVV EASKHSVLEL DAIRLVLIPF LLDSPVKGDQ GIKKVNILWT DRPKAPKRNG
1101: NHLAGELYLK VTMYGDRGKR NCWTALLETC LPIMDMIDWG RSHPDNIRQC CSVYGIDAGR SIFVANLESA VSDTGKEILR EHLLLVADSL SVTGEFVALN
1201: AKGSRVYYTG RCV
Arabidopsis Description
NRPD1DNA-directed RNA polymerase IV subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ02]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.