Factsheet for HORVU5Hr1G117770.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G515800.1	Wheat	nucleus	81.1	87.02
TraesCS4A01G357100.1	Wheat	nucleus	80.6	86.59
TraesCS5B01G515600.1	Wheat	nucleus	80.99	86.43
HORVU0Hr1G014220.1	Barley	cytosol	4.84	86.0
Zm00001d029055_P010	Maize	nucleus	60.4	63.55
KXG22455	Sorghum	nucleus	60.57	62.18
Os06t0612200-01	Rice	nucleus	7.99	59.92
GSMUA_Achr3P28430_001	Banana	nucleus	46.12	54.74
GSMUA_Achr7P08010_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	47.47	49.88
CDY65464	Canola	nucleus	25.42	48.24
VIT_08s0007g08090.t01	Wine grape	cytosol, nucleus, plastid	44.94	47.25
CDY06084	Canola	nucleus	39.65	46.35
CDX67702	Canola	nucleus	39.09	46.06
Solyc10g080350.1.1	Tomato	nucleus	43.25	45.86
CDX72007	Canola	nucleus	39.48	45.73
KRH33046	Soybean	nucleus	42.29	45.55
Bra003294.1-P	Field mustard	nucleus	40.38	45.44
Bra007345.1-P	Field mustard	nucleus	41.45	44.94
KRH71957	Soybean	nucleus	32.4	44.72
AT3G57660.1	Thale cress	nucleus	41.06	43.71
CDY65462	Canola	nucleus	8.49	42.18
HORVU5Hr1G082550.1	Barley	cytosol, nucleus	4.5	36.87
HORVU7Hr1G011970.1	Barley	mitochondrion, nucleus	4.5	35.09
HORVU5Hr1G114340.1	Barley	nucleus	14.4	29.63
HORVU3Hr1G013150.1	Barley	nucleus	2.36	28.38
HORVU1Hr1G040070.1	Barley	mitochondrion	2.31	27.7
HORVU1Hr1G025160.5	Barley	cytosol	11.7	27.26
HORVU6Hr1G027050.1	Barley	nucleus	20.87	26.04
HORVU7Hr1G037130.2	Barley	nucleus	13.1	25.6
HORVU6Hr1G082430.1	Barley	cytosol	2.31	25.47
HORVU5Hr1G114350.1	Barley	mitochondrion	3.71	23.4
HORVU5Hr1G114400.2	Barley	nucleus	21.93	21.9
HORVU2Hr1G126750.3	Barley	nucleus	21.65	20.34
HORVU1Hr1G023350.20	Barley	cytosol, nucleus, plastid	13.89	16.49
HORVU7Hr1G032760.1	Barley	cytosol	3.49	16.32
HORVU6Hr1G022890.1	Barley	nucleus	14.06	12.68
HORVU3Hr1G112670.15	Barley	nucleus	9.11	12.65
HORVU0Hr1G000370.1	Barley	extracellular	1.01	12.16

Protein Annotations

KEGG:00230+2.7.7.6	KEGG:00240+2.7.7.6	Gene3D:1.10.132.30	Gene3D:1.10.150.390	Gene3D:1.20.120.1280	MapMan:15.1.1.1
Gene3D:2.20.25.410	Gene3D:2.40.40.20	Gene3D:3.30.1490.180	Gene3D:3.30.70.2850	UniProt:A0A287SW84	ncoils:Coil
InterPro:DNA-dir_RNA_pol1_lsu	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009506
GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	EnsemblPlantsGene:HORVU5Hr1G117770	EnsemblPlants:HORVU5Hr1G117770.4	InterPro:IPR038120
PFAM:PF00623	PFAM:PF04983	PFAM:PF04997	PFAM:PF04998	PFAM:PF05000	PANTHER:PTHR19376
PANTHER:PTHR19376:SF11	InterPro:RNA_pol_N	InterPro:RNA_pol_Rpb1_1	InterPro:RNA_pol_Rpb1_3	InterPro:RNA_pol_Rpb1_4	InterPro:RNA_pol_Rpb1_5
InterPro:RNA_pol_asu	InterPro:Rpb1_funnel_sf	SMART:SM00663	SUPFAM:SSF64484	UniParc:UPI000B4733A7	SEG:seg

Description

DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A287SW84]

Coordinates

chrchr5H:-:651204177..651218394

Molecular Weight (calculated)

198706.0 Da

IEP (calculated)

7.436

GRAVY (calculated)

-0.595

Length

1778 amino acids

Sequence
(BLAST)

0001: NPSRREPLRR PPPHPFPPLP SNAGRRPLPL GRRRAMEQEQ ATSVEVDSIL FGFYTDDEVR RLSVKRLTRS ERLDAKNCPV PGGLLDPAMG PVNANDNCKT
0101: CALNFSQCPG HFGHIELSKP LFNPLLFDTL RDLLRSTCFT CRKFRLSTQL VDRYAHELEL LARGDVVQAK NLQDSAVSVE SLEMDEDDSV DKPASPSDRG
0201: NKTWTSIQLK EAHSIFSKLM KKRVNKCANC GMKSPSVKCQ IYGWLTIQGT DGSAARRKAI TDYNLEGDGH IPDPNGTGVS GLTDDRVKAS SNQTKGLSDD
0301: RPLLTTEVES ILKDLWEKEA RFCMLLCDFQ QNLCVSEKRR GYEMFFLKSM LVPPNRFRPS TSSSLGIMEH PQNVMLSKVQ EANLALQHDN VHPNHMDILT
0401: RWRDLQTSVN LFYDNSKGLV KSGKDGHGVR QLVDKKTGIV RQKIMGKRVN HSCRTVISPD PFLAVNEIGI PPAAASKLTY PEKVTPWNAK KLQGAINNGP
0501: EIHPGATHFK VNNNMYRLQD DHSKRRGIAK MLAASRGSIS QPGKDPKCEF ESKVVYRHIQ DGDVVLVNRQ PTLHKPSMMA HVVRVLAGEK TIRMHYANCS
0601: TYNADFDGDE MNVHFPQDEI SRAEAINIVD ANKQYIGPRS GEAVRGLIQD HIVGAVLLTK VGTLLSREEY SQLVYGSCVS SARSPCQSGK RVSIMNDDDT
0701: LELLSPAILK PKLLWTGKQV ITTILNHLTK GHPPFTVEME GKIPVQYLTP KKCVAAEDKA VCSEKKKKEK AISSKKEKNE KASAQGQESP EEQKETARAP
0801: EEQVLRIHDN QLLTGMIDKK QFGNYGIVHT VHELYGADTA GRLLSIFSRL FTLFLQFHGF TCGIDDLLLS QESDKQRMKI LSGSEEHSKQ AHREFTCTGD
0901: GDIKDTVKLQ MDVETVVRRI GESANVALDK KILSVLNELT TKVNKNMFPY GLQKPFPRNC LTLMTATGAK GGDVNMTQIS SLLGSQDLEG ARVPRMVSGK
1001: SLPCFPPWDT NTRAGGFVSD RFLTGLRPQE YYFHCMAGRN GLIDTAVKTS RSGYLQRCLI KSLESLFVSY DHTVRNVDGS IIQFCYGEDG VDVHKSSFLN
1101: NFKELRDNRT AVFDRLGRYN DELEIYNRDP LLLKPKHITK LPEELTGRAK DFLKKQCPCL KELKFKKCRC RYLIKEQELT KLLKVKYMAS LVDPGEAVGV
1201: ILAQSLGEPS TQMTLNTFHL AGRGDMNVTL GMPRIQEILM KASANISTPV MVCPLREDIS RDEAKRLETK LRGVRLADIV EAIEVCTIPF HNSNGHISSL
1301: YKLQLKLFSP ECYPPESELT VDECQTALRT VFVDAMEYAI EKHVNFLHKV SGIQETRVKD TESSQSEGPE ESESRPIDGE ESGGSDGDDE NNDDLGADAE
1401: KRKRQENDEM EYDDDIGEED GMNSDPEEET KYELDNNDDA VESGAESEGN SEEHVSDSGN KTGKLEGRLA AGKLKKDKNE TVENLEEQKQ AQITQKRSKK
1501: LKLTVHVESA DLKFEVHYIL HKEPHILLSQ IAQKTLKSLF VSASHNKSIS ECTVVWPEEK YDSAKEKKKG DSSQGDVQGG SAQEEEKKDD STKKKKKGDS
1601: TTKKKKGDSS QEEKKDDPTK KKKEERQLQT SGVDFEVFWD LQDYLDIHKL KSNDIHAILN TYGVEAARAT IINEVKAVFE PFGIKVDPRH LSLAADFMTS
1701: GGSYRPMNSL GMSRFCTSPF GKMSFEQATR FIMEAAYHGE VDNLTGPSAT VSLGKPAKTG TGAFGLMQNI TLEERAVM

Best Arabidopsis Sequence Match ( AT3G57660.1 )
(BLAST)

0001: MAHAQTTEVC LSFHRSLLFP MGASQVVESV RFSFMTEQDV RKHSFLKVTS PILHDNVGNP FPGGLYDLKL GPKDDKQACN SCGQLKLACP GHCGHIELVF
0101: PIYHPLLFNL LFNFLQRACF FCHHFMAKPE DVERAVSQLK LIIKGDIVSA KQLESNTPTK SKSSDESCES VVTTDSSEEC EDSDVEDQRW TSLQFAEVTA
0201: VLKNFMRLSS KSCSRCKGIN PKLEKPMFGW VRMRAMKDSD VGANVIRGLK LKKSTSSVEN PDGFDDSGID ALSEVEDGDK ETREKSTEVA AEFEEHNSKR
0301: DLLPSEVRNI LKHLWQNEHE FCSFIGDLWQ SGSEKIDYSM FFLESVLVPP TKFRPPTTGG DSVMEHPQTV GLNKVIESNN ILGNACTNKL DQSKVIFRWR
0401: NLQESVNVLF DSKTATVQSQ RDSSGICQLL EKKEGLFRQK MMGKRVNHAC RSVISPDPYI AVNDIGIPPC FALKLTYPER VTPWNVEKLR EAIINGPDIH
0501: PGATHYSDKS STMKLPSTEK ARRAIARKLL SSRGATTELG KTCDINFEGK TVHRHMRDGD IVLVNRQPTL HKPSLMAHKV RVLKGEKTLR LHYANCSTYN
0601: ADFDGDEMNV HFPQDEISRA EAYNIVNANN QYARPSNGEP LRALIQDHIV SSVLLTKRDT FLDKDHFNQL LFSSGVTDMV LSTFSGRSGK KVMVSASDAE
0701: LLTVTPAILK PVPLWTGKQV ITAVLNQITK GHPPFTVEKA TKLPVDFFKC RSREVKPNSG DLTKKKEIDE SWKQNLNEDK LHIRKNEFVC GVIDKAQFAD
0801: YGLVHTVHEL YGSNAAGNLL SVFSRLFTVF LQTHGFTCGV DDLIILKDMD EERTKQLQEC ENVGERVLRK TFGIDVDVQI DPQDMRSRIE RILYEDGESA
0901: LASLDRSIVN YLNQCSSKGV MNDLLSDGLL KTPGRNCISL MTISGAKGSK VNFQQISSHL GQQDLEGKRV PRMVSGKTLP CFHPWDWSPR AGGFISDRFL
1001: SGLRPQEYYF HCMAGREGLV DTAVKTSRSG YLQRCLMKNL ESLKVNYDCT VRDADGSIIQ FQYGEDGVDV HRSSFIEKFK ELTINQDMVL QKCSEDMLSG
1101: ASSYISDLPI SLKKGAEKFV EAMPMNERIA SKFVRQEELL KLVKSKFFAS LAQPGEPVGV LAAQSVGEPS TQMTLNTFHL AGRGEMNVTL GIPRLQEILM
1201: TAAANIKTPI MTCPLLKGKT KEDANDITDR LRKITVADII KSMELSVVPY TVYENEVCSI HKLKINLYKP EHYPKHTDIT EEDWEETMRA VFLRKLEDAI
1301: ETHMKMLHRI RGIHNDVTGP IAGNETDNDD SVSGKQNEDD GDDDGEGTEV DDLGSDAQKQ KKQETDEMDY EENSEDETNE PSSISGVEDP EMDSENEDTE
1401: VSKEDTPEPQ EESMEPQKEV KGVKNVKEQS KKKRRKFVRA KSDRHIFVKG EGEKFEVHFK FATDDPHILL AQIAQQTAQK VYIQNSGKIE RCTVANCGDP
1501: QVIYHGDNPK ERREISNDEK KASPALHASG VDFPALWEFQ DKLDVRYLYS NSIHDMLNIF GVEAARETII REINHVFKSY GISVSIRHLN LIADYMTFSG
1601: GYRPMSRMGG IAESTSPFCR MTFETATKFI VQAATYGEKD TLETPSARIC LGLPALSGTG CFDLMQRVEL

Arabidopsis Description

NRPA1DNA-directed RNA polymerase I subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVY0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.