Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G357100.1 | Wheat | nucleus | 96.32 | 96.44 |
| TraesCS5B01G515600.1 | Wheat | nucleus | 95.96 | 95.44 |
| HORVU5Hr1G117770.4 | Barley | nucleus, plastid | 87.02 | 81.1 |
| Zm00001d029055_P010 | Maize | nucleus | 64.63 | 63.37 |
| KXG22455 | Sorghum | nucleus | 64.88 | 62.07 |
| Os06t0612200-01 | Rice | nucleus | 8.39 | 58.65 |
| GSMUA_Achr3P28430_001 | Banana | nucleus | 50.33 | 55.67 |
| GSMUA_Achr7P08010_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 51.54 | 50.47 |
| CDY65464 | Canola | nucleus | 27.1 | 47.92 |
| VIT_08s0007g08090.t01 | Wine grape | cytosol, nucleus, plastid | 48.1 | 47.13 |
| CDY06084 | Canola | nucleus | 42.61 | 46.42 |
| Solyc10g080350.1.1 | Tomato | nucleus | 46.71 | 46.15 |
| CDX67702 | Canola | nucleus | 42.0 | 46.12 |
| KRH33046 | Soybean | nucleus | 45.5 | 45.67 |
| CDX72007 | Canola | nucleus | 42.31 | 45.67 |
| Bra003294.1-P | Field mustard | nucleus | 43.45 | 45.57 |
| Bra007345.1-P | Field mustard | nucleus | 44.48 | 44.94 |
| KRH71957 | Soybean | nucleus | 34.82 | 44.8 |
| AT3G57660.1 | Thale cress | nucleus | 44.72 | 44.37 |
| CDY65462 | Canola | nucleus | 8.99 | 41.62 |
| TraesCS3D01G448000.1 | Wheat | nucleus | 22.09 | 26.24 |
| TraesCS7D01G182500.1 | Wheat | cytosol | 13.58 | 25.92 |
| TraesCS1D01G115900.3 | Wheat | mitochondrion | 11.1 | 25.59 |
| TraesCS2D01G427500.2 | Wheat | nucleus | 22.39 | 25.22 |
| TraesCS5D01G498900.1 | Wheat | nucleus | 23.23 | 20.84 |
| TraesCS5D01G499000.1 | Wheat | nucleus | 22.81 | 20.66 |
| TraesCS2D01G571500.1 | Wheat | nucleus | 22.69 | 20.29 |
| TraesCS7D01G297100.1 | Wheat | nucleus | 22.63 | 20.17 |
| TraesCS1D01G108700.1 | Wheat | nucleus | 14.36 | 16.7 |
| TraesCS3D01G522400.1 | Wheat | plastid | 12.98 | 13.35 |
| TraesCS6D01G113900.1 | Wheat | nucleus | 14.97 | 12.74 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.150.390 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 |
| MapMan:15.1.1.1 | Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 | Gene3D:3.30.70.2850 | ncoils:Coil |
| InterPro:DNA-dir_RNA_pol1_lsu | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009506 |
| GO:GO:0009987 | GO:GO:0016740 | InterPro:IPR038120 | PFAM:PF00623 | PFAM:PF04983 | PFAM:PF04997 |
| PFAM:PF04998 | PFAM:PF05000 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF11 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 |
| InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 |
| SUPFAM:SSF64484 | EnsemblPlantsGene:TraesCS5D01G515800 | EnsemblPlants:TraesCS5D01G515800.1 | TIGR:cd01435 | SEG:seg | : |
Description
No Description!
Coordinates
chr5D:-:538697624..538712230
Molecular Weight (calculated)
185260.0 Da
IEP (calculated)
7.223
GRAVY (calculated)
-0.533
Length
1657 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEQEQATSVE VDSILFGFYT DDEVRRLSVK RLTRSERLDA KNCPVPGGLL DPAMGPVNAN DTCKTCAQQP GDCPGHFGHI ELSKPLFNPL LFDTLRDLLR
0101: STCFTCRKFR LSAQLVDRYA RELELLARGD VVQAKNLQDS AVSEESVEMD EDGSVDKPAS PSDRGNKTWT SIQLKEAHSI FSKLMKKRVN KCANCGMKNP
0201: PIKCQIYGWL TIQGTDGSAV RRKAITDYNL EGDRHISNPN GTGVSGLTDD RVKASSNQTK DLSDDRPLLT TEVESILKDL WEKEARFCML LCDFQQNLCV
0301: SEKRRGYEMF FLKSMLVPPN RFRPSTSSSL GIMEHPQNVM LSKVQEANLA LQHDSAHPNH MDVLTRWRDL QTSVNLFYDS SKGLGKSGKD GHGVRQLVDK
0401: KTGIVRQKIM GKRVNHSCRT VISPDPFLAV NEIGIPPAAA LKLTYPEKVT PWNAKKLQGA ISNGSEIHPG ATHLKVNNQK YKLQDERTKR RGIAKMLAAS
0501: RGSISQPGKD PKCEFESKVV YRHIQDGDIV LVNRQPTLHK PSMMAHVVRV LPGEKTIRMH YANCSTYNAD FDGDEMNVHF PQDEISRAEA INIVDANKQY
0601: IGPRSGEAVR GLIQDHIVGA VLLTKVDTFL SREEYSQLVY GSCVSSSRGP CQSGKRVSIV KDDDTLELLP PAFVKPERWT GKQVITTILN HLTKGHPPFT
0701: VEMKGKISVQ YLTAKVRHVA EGEKLRDPEE LVLYIRHNEL LKGMIDKNQF GNHGIVHTVH ELYGADTAGR LLSIFSRLFT LFLQFHGFTC GIDDLLLSQE
0801: SNNERTDFLS RSEEHSEEAH KKFLCKKDVD TDRVELQMNV EKVVRRIGES ANVALDKAML SELNGLTTKV NKNMFPYGLQ KPFPKNCLTL MTATGAKGGD
0901: VNMTQISSLL GSQDLEGARV PRMISGKSLP CFPPWDSSSR AGGYVSDRFL TGLRPQEYYF HCMAGRNGLI DTAVKTSRSG YLQRCLIKSL ESLFVSYDHS
1001: VRNVDGSIIQ FCYGEDGVDV HKSSFLKKFK ELADNRKAVS DRLAGYKGEL EMYNGDPLSF KSKYITKLPQ GLTESATGFH KENKCCCRKL KKKCRCRYNI
1101: NEEELMKLLK VKYVASLVDP GEAVGVILAQ SLGEPSTQMT LNTFHLAGRG DMNVTLGMPR IQEILMKASA NIGTPYMKCP VHKGKKRKDA ACLAEKLRGV
1201: TLADVVEGIE VCTVPFHNSN GHISSLYKLH LKLFSPDCYP PESELTVDEC QASLRTVFVD AMEYAIEKHL NLLHKVSGIQ ETRVKDTESL PSEGPEESEG
1301: RPTNGDESDT SDGDDENEDD LGADAEKRKR QENDEMEYED DIENEDGMNS DPDEETKHEL DNEDDPAESG VESEENDEGH LSDSSNKTAK LEGRLAATKL
1401: KKERNETVEN LQEQKQAQIT QKRSKKLKLT VHVESADLNF EVHYILHKEP HILLSQIAQK TLRSLFVSGS HNKNIGLCNV IWPEKKKKGE TETKQKEKER
1501: KEAFRGLQTA GLDFEVFWDL QDFLNVRKLT SNDIHAMLRT YGVEAARATI INEVKAVFEP FGIKVDPRHL SLAADYMTSG GSYRPMNSLG MARFCTSPFG
1601: KMSFEQATRF IMEAAYHGEV DNLTGPSATV SLGKPAKTGT GAFGLMQNIT LEERAVM
0101: STCFTCRKFR LSAQLVDRYA RELELLARGD VVQAKNLQDS AVSEESVEMD EDGSVDKPAS PSDRGNKTWT SIQLKEAHSI FSKLMKKRVN KCANCGMKNP
0201: PIKCQIYGWL TIQGTDGSAV RRKAITDYNL EGDRHISNPN GTGVSGLTDD RVKASSNQTK DLSDDRPLLT TEVESILKDL WEKEARFCML LCDFQQNLCV
0301: SEKRRGYEMF FLKSMLVPPN RFRPSTSSSL GIMEHPQNVM LSKVQEANLA LQHDSAHPNH MDVLTRWRDL QTSVNLFYDS SKGLGKSGKD GHGVRQLVDK
0401: KTGIVRQKIM GKRVNHSCRT VISPDPFLAV NEIGIPPAAA LKLTYPEKVT PWNAKKLQGA ISNGSEIHPG ATHLKVNNQK YKLQDERTKR RGIAKMLAAS
0501: RGSISQPGKD PKCEFESKVV YRHIQDGDIV LVNRQPTLHK PSMMAHVVRV LPGEKTIRMH YANCSTYNAD FDGDEMNVHF PQDEISRAEA INIVDANKQY
0601: IGPRSGEAVR GLIQDHIVGA VLLTKVDTFL SREEYSQLVY GSCVSSSRGP CQSGKRVSIV KDDDTLELLP PAFVKPERWT GKQVITTILN HLTKGHPPFT
0701: VEMKGKISVQ YLTAKVRHVA EGEKLRDPEE LVLYIRHNEL LKGMIDKNQF GNHGIVHTVH ELYGADTAGR LLSIFSRLFT LFLQFHGFTC GIDDLLLSQE
0801: SNNERTDFLS RSEEHSEEAH KKFLCKKDVD TDRVELQMNV EKVVRRIGES ANVALDKAML SELNGLTTKV NKNMFPYGLQ KPFPKNCLTL MTATGAKGGD
0901: VNMTQISSLL GSQDLEGARV PRMISGKSLP CFPPWDSSSR AGGYVSDRFL TGLRPQEYYF HCMAGRNGLI DTAVKTSRSG YLQRCLIKSL ESLFVSYDHS
1001: VRNVDGSIIQ FCYGEDGVDV HKSSFLKKFK ELADNRKAVS DRLAGYKGEL EMYNGDPLSF KSKYITKLPQ GLTESATGFH KENKCCCRKL KKKCRCRYNI
1101: NEEELMKLLK VKYVASLVDP GEAVGVILAQ SLGEPSTQMT LNTFHLAGRG DMNVTLGMPR IQEILMKASA NIGTPYMKCP VHKGKKRKDA ACLAEKLRGV
1201: TLADVVEGIE VCTVPFHNSN GHISSLYKLH LKLFSPDCYP PESELTVDEC QASLRTVFVD AMEYAIEKHL NLLHKVSGIQ ETRVKDTESL PSEGPEESEG
1301: RPTNGDESDT SDGDDENEDD LGADAEKRKR QENDEMEYED DIENEDGMNS DPDEETKHEL DNEDDPAESG VESEENDEGH LSDSSNKTAK LEGRLAATKL
1401: KKERNETVEN LQEQKQAQIT QKRSKKLKLT VHVESADLNF EVHYILHKEP HILLSQIAQK TLRSLFVSGS HNKNIGLCNV IWPEKKKKGE TETKQKEKER
1501: KEAFRGLQTA GLDFEVFWDL QDFLNVRKLT SNDIHAMLRT YGVEAARATI INEVKAVFEP FGIKVDPRHL SLAADYMTSG GSYRPMNSLG MARFCTSPFG
1601: KMSFEQATRF IMEAAYHGEV DNLTGPSATV SLGKPAKTGT GAFGLMQNIT LEERAVM
0001: MAHAQTTEVC LSFHRSLLFP MGASQVVESV RFSFMTEQDV RKHSFLKVTS PILHDNVGNP FPGGLYDLKL GPKDDKQACN SCGQLKLACP GHCGHIELVF
0101: PIYHPLLFNL LFNFLQRACF FCHHFMAKPE DVERAVSQLK LIIKGDIVSA KQLESNTPTK SKSSDESCES VVTTDSSEEC EDSDVEDQRW TSLQFAEVTA
0201: VLKNFMRLSS KSCSRCKGIN PKLEKPMFGW VRMRAMKDSD VGANVIRGLK LKKSTSSVEN PDGFDDSGID ALSEVEDGDK ETREKSTEVA AEFEEHNSKR
0301: DLLPSEVRNI LKHLWQNEHE FCSFIGDLWQ SGSEKIDYSM FFLESVLVPP TKFRPPTTGG DSVMEHPQTV GLNKVIESNN ILGNACTNKL DQSKVIFRWR
0401: NLQESVNVLF DSKTATVQSQ RDSSGICQLL EKKEGLFRQK MMGKRVNHAC RSVISPDPYI AVNDIGIPPC FALKLTYPER VTPWNVEKLR EAIINGPDIH
0501: PGATHYSDKS STMKLPSTEK ARRAIARKLL SSRGATTELG KTCDINFEGK TVHRHMRDGD IVLVNRQPTL HKPSLMAHKV RVLKGEKTLR LHYANCSTYN
0601: ADFDGDEMNV HFPQDEISRA EAYNIVNANN QYARPSNGEP LRALIQDHIV SSVLLTKRDT FLDKDHFNQL LFSSGVTDMV LSTFSGRSGK KVMVSASDAE
0701: LLTVTPAILK PVPLWTGKQV ITAVLNQITK GHPPFTVEKA TKLPVDFFKC RSREVKPNSG DLTKKKEIDE SWKQNLNEDK LHIRKNEFVC GVIDKAQFAD
0801: YGLVHTVHEL YGSNAAGNLL SVFSRLFTVF LQTHGFTCGV DDLIILKDMD EERTKQLQEC ENVGERVLRK TFGIDVDVQI DPQDMRSRIE RILYEDGESA
0901: LASLDRSIVN YLNQCSSKGV MNDLLSDGLL KTPGRNCISL MTISGAKGSK VNFQQISSHL GQQDLEGKRV PRMVSGKTLP CFHPWDWSPR AGGFISDRFL
1001: SGLRPQEYYF HCMAGREGLV DTAVKTSRSG YLQRCLMKNL ESLKVNYDCT VRDADGSIIQ FQYGEDGVDV HRSSFIEKFK ELTINQDMVL QKCSEDMLSG
1101: ASSYISDLPI SLKKGAEKFV EAMPMNERIA SKFVRQEELL KLVKSKFFAS LAQPGEPVGV LAAQSVGEPS TQMTLNTFHL AGRGEMNVTL GIPRLQEILM
1201: TAAANIKTPI MTCPLLKGKT KEDANDITDR LRKITVADII KSMELSVVPY TVYENEVCSI HKLKINLYKP EHYPKHTDIT EEDWEETMRA VFLRKLEDAI
1301: ETHMKMLHRI RGIHNDVTGP IAGNETDNDD SVSGKQNEDD GDDDGEGTEV DDLGSDAQKQ KKQETDEMDY EENSEDETNE PSSISGVEDP EMDSENEDTE
1401: VSKEDTPEPQ EESMEPQKEV KGVKNVKEQS KKKRRKFVRA KSDRHIFVKG EGEKFEVHFK FATDDPHILL AQIAQQTAQK VYIQNSGKIE RCTVANCGDP
1501: QVIYHGDNPK ERREISNDEK KASPALHASG VDFPALWEFQ DKLDVRYLYS NSIHDMLNIF GVEAARETII REINHVFKSY GISVSIRHLN LIADYMTFSG
1601: GYRPMSRMGG IAESTSPFCR MTFETATKFI VQAATYGEKD TLETPSARIC LGLPALSGTG CFDLMQRVEL
0101: PIYHPLLFNL LFNFLQRACF FCHHFMAKPE DVERAVSQLK LIIKGDIVSA KQLESNTPTK SKSSDESCES VVTTDSSEEC EDSDVEDQRW TSLQFAEVTA
0201: VLKNFMRLSS KSCSRCKGIN PKLEKPMFGW VRMRAMKDSD VGANVIRGLK LKKSTSSVEN PDGFDDSGID ALSEVEDGDK ETREKSTEVA AEFEEHNSKR
0301: DLLPSEVRNI LKHLWQNEHE FCSFIGDLWQ SGSEKIDYSM FFLESVLVPP TKFRPPTTGG DSVMEHPQTV GLNKVIESNN ILGNACTNKL DQSKVIFRWR
0401: NLQESVNVLF DSKTATVQSQ RDSSGICQLL EKKEGLFRQK MMGKRVNHAC RSVISPDPYI AVNDIGIPPC FALKLTYPER VTPWNVEKLR EAIINGPDIH
0501: PGATHYSDKS STMKLPSTEK ARRAIARKLL SSRGATTELG KTCDINFEGK TVHRHMRDGD IVLVNRQPTL HKPSLMAHKV RVLKGEKTLR LHYANCSTYN
0601: ADFDGDEMNV HFPQDEISRA EAYNIVNANN QYARPSNGEP LRALIQDHIV SSVLLTKRDT FLDKDHFNQL LFSSGVTDMV LSTFSGRSGK KVMVSASDAE
0701: LLTVTPAILK PVPLWTGKQV ITAVLNQITK GHPPFTVEKA TKLPVDFFKC RSREVKPNSG DLTKKKEIDE SWKQNLNEDK LHIRKNEFVC GVIDKAQFAD
0801: YGLVHTVHEL YGSNAAGNLL SVFSRLFTVF LQTHGFTCGV DDLIILKDMD EERTKQLQEC ENVGERVLRK TFGIDVDVQI DPQDMRSRIE RILYEDGESA
0901: LASLDRSIVN YLNQCSSKGV MNDLLSDGLL KTPGRNCISL MTISGAKGSK VNFQQISSHL GQQDLEGKRV PRMVSGKTLP CFHPWDWSPR AGGFISDRFL
1001: SGLRPQEYYF HCMAGREGLV DTAVKTSRSG YLQRCLMKNL ESLKVNYDCT VRDADGSIIQ FQYGEDGVDV HRSSFIEKFK ELTINQDMVL QKCSEDMLSG
1101: ASSYISDLPI SLKKGAEKFV EAMPMNERIA SKFVRQEELL KLVKSKFFAS LAQPGEPVGV LAAQSVGEPS TQMTLNTFHL AGRGEMNVTL GIPRLQEILM
1201: TAAANIKTPI MTCPLLKGKT KEDANDITDR LRKITVADII KSMELSVVPY TVYENEVCSI HKLKINLYKP EHYPKHTDIT EEDWEETMRA VFLRKLEDAI
1301: ETHMKMLHRI RGIHNDVTGP IAGNETDNDD SVSGKQNEDD GDDDGEGTEV DDLGSDAQKQ KKQETDEMDY EENSEDETNE PSSISGVEDP EMDSENEDTE
1401: VSKEDTPEPQ EESMEPQKEV KGVKNVKEQS KKKRRKFVRA KSDRHIFVKG EGEKFEVHFK FATDDPHILL AQIAQQTAQK VYIQNSGKIE RCTVANCGDP
1501: QVIYHGDNPK ERREISNDEK KASPALHASG VDFPALWEFQ DKLDVRYLYS NSIHDMLNIF GVEAARETII REINHVFKSY GISVSIRHLN LIADYMTFSG
1601: GYRPMSRMGG IAESTSPFCR MTFETATKFI VQAATYGEKD TLETPSARIC LGLPALSGTG CFDLMQRVEL
Arabidopsis Description
NRPA1DNA-directed RNA polymerase I subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVY0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.