Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
nucleus: 27291164 nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH71957 | Soybean | nucleus | 69.05 | 88.51 |
| VIT_08s0007g08090.t01 | Wine grape | cytosol, nucleus, plastid | 62.87 | 61.38 |
| CDY06084 | Canola | nucleus | 54.63 | 59.3 |
| CDY65464 | Canola | nucleus | 33.62 | 59.23 |
| CDX72007 | Canola | nucleus | 54.57 | 58.7 |
| CDX67702 | Canola | nucleus | 52.82 | 57.79 |
| Bra007345.1-P | Field mustard | nucleus | 57.36 | 57.74 |
| Bra003294.1-P | Field mustard | nucleus | 54.57 | 57.03 |
| AT3G57660.1 | Thale cress | nucleus | 56.57 | 55.93 |
| Solyc10g080350.1.1 | Tomato | nucleus | 56.63 | 55.75 |
| GSMUA_Achr3P28430_001 | Banana | nucleus | 49.61 | 54.67 |
| CDY65462 | Canola | nucleus | 11.51 | 53.07 |
| GSMUA_Achr7P08010_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 50.7 | 49.47 |
| Zm00001d029055_P010 | Maize | nucleus | 48.7 | 47.57 |
| Os06t0612200-01 | Rice | nucleus | 6.78 | 47.26 |
| KXG22455 | Sorghum | nucleus | 48.76 | 46.48 |
| TraesCS4A01G357100.1 | Wheat | nucleus | 45.97 | 45.86 |
| TraesCS5D01G515800.1 | Wheat | nucleus | 45.67 | 45.5 |
| TraesCS5B01G515600.1 | Wheat | nucleus | 45.61 | 45.2 |
| HORVU5Hr1G117770.4 | Barley | nucleus, plastid | 45.55 | 42.29 |
| KRG88695 | Soybean | nucleus | 22.59 | 26.82 |
| KRH40807 | Soybean | nucleus | 23.44 | 21.84 |
| KRH76591 | Soybean | nucleus | 24.17 | 21.84 |
| KRH28855 | Soybean | nucleus | 23.99 | 21.67 |
| KRH27976 | Soybean | nucleus | 16.29 | 18.5 |
| KRH77477 | Soybean | nucleus | 16.23 | 18.39 |
| KRH20723 | Soybean | nucleus | 15.51 | 12.67 |
| KRH13386 | Soybean | nucleus | 15.69 | 12.44 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.132.30 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 | EntrezGene:100779532 |
| MapMan:15.1.1.1 | Gene3D:2.20.25.410 | Gene3D:2.40.40.20 | Gene3D:3.30.1490.180 | Gene3D:3.30.70.2850 | EMBL:ACUP02006237 |
| ncoils:Coil | InterPro:DNA-dir_RNA_pol1_lsu | EnsemblPlantsGene:GLYMA_10G095200 | GO:GO:0001054 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005736 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006360 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0016779 | UniProt:I1L9X1 | InterPro:IPR038120 | EnsemblPlants:KRH33046 | ProteinID:KRH33046 |
| ProteinID:KRH33046.1 | PFAM:PF00623 | PFAM:PF04983 | PFAM:PF04997 | PFAM:PF04998 | PFAM:PF05000 |
| PANTHER:PTHR19376 | PANTHER:PTHR19376:SF11 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_4 |
| InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu | InterPro:Rpb1_funnel_sf | SMART:SM00663 | SUPFAM:SSF64484 | UniParc:UPI000295D2DA |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr10:-:13841218..13864933
Molecular Weight (calculated)
184553.0 Da
IEP (calculated)
7.213
GRAVY (calculated)
-0.450
Length
1651 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVLTTEGATN SVEAVAFSFL TDDEIRRSSR VKITSPILVD FLLHPVPDGL YDAALGPFDD KSLCKSCGQT SKHCPGHFGH IELVSPVYNP LMFNILSNIL
0101: QRTCFTCHHF RAPSKEVDIR TSQLELIMKG DIIRAKRLES IIPGKSVDSF NPDESIHPGD GDESQCYSAE QLGENWTSLQ FSEAMSVLRK LLTKKHKKCQ
0201: KCGAKNPKIS KPTFGWFHMN VLSADETRAD TIRSVESETT NDDISLGGGD TTDVEDITSA GTAKRDKRKK EKLSYKLAEQ NKLSGSLLPS QVKGILELLW
0301: ENEARLCSYI NDIQDQGFGK KAGHSMFFLE NIFVPPIKFR PPTKGGDNVM EHPQTVLLTK VLQCNISLGD AHLNKSDPSK VLSRWMDLQQ SVNMLFDNKT
0401: ASGKRDVATG ICQLLEKKEG IFRQKMMGKR VNFACRSVIS PDPYLAVNEI GIPPYFALRL SYPERVTPWN VVKLRNAILN GPESHPGATH YADKVSIVKL
0501: PPKGKLLSLT SRKLPTSRGV ILHQGKISDH EFEGKVVYRH LKDGDVVLVN RQPTLHKPSI MAHIVRVLKG EKTVRMHYAN CSTYNADFDG DEINVHFPQD
0601: EISRAEAYNI VNANNQYVKP TSGDPIRALI QDHIVSAALL TKKDTFLSYE EFNQLLYSSG VSMAGLGSFY GKHGQKVFIS NSESEMFLFP PAIWKPEPLW
0701: TGKQVISALL YYITRGSPPF TAEKNAKIPS NFFKTQIRKG KRYTEDTSKK KDKPDEDKLL IYKNDLVRGV VDKAQFGDYG MIHTVQELYG SNVAGNLLSA
0801: LSRLFTTFLQ MHGFTCGVDD LMLTEGKDVE RMNQLKSCEI IGDSVHREFI GVKNSDNIDP VTLQLNIEKK IRSNGEAALT LDRKMTSNLN SRTSSGILKK
0901: LLSEGILKPS GKNCISLMTT SGAKGSMVNF QQISSHLGQQ ELEGKRVPRM VSGKTLPCFP PWDCSPRAGG FIIDRFLTAL HPQEYYFHCM AGREGLVDTA
1001: VKTSRSGYLQ RCLMKNLECL KVCYDHTVRD ADGSIIQFHY GEDGVDVHQT SFITEFGALS TNKELVFSNY CRQLDRSSPY INKLPEALEG KAEKFSKQRN
1101: LGSMEQADFL RLMEHKYVSC LAQPGEPVGV LASQSVGEPA TQMTLNTFHL AGRGEMNVTL GIPRLQEILM AAARDIKTPF MTCPLRHDKS MKDAICLADK
1201: LKKITVADII KSMKVSVVPV TVLGGQVCSI YKLVMKLYKS KQYPEYTDIT LDDWEETLRV NFVRELEDAI QNHMTLLSKI SGIKKFKTDP QSNYSNSSED
1301: AHSNGSESEK KGQNNDDDDE DGGGVEDTEG YEDLGSDAQK RKLQGTDEVD YEDGPEEETH DGELSEEIEG DEDGSDVDAN ENYNNVTDAN NSEGLEKPSK
1401: SKTIDEKQNL KREKKKSEPT TKKYDRAIFV EAKGKHFEIH FRFTGEPHIL LTQIAQRTAK KVCIQNFGKV GECKAITCKE SGVIYYGKDG RKRIEISASE
1501: KEQIPALQTS GVHFKTFWEL EDDLDVRYIY SNNVHAMLNA YGVEAARETI IREVQNVFKS YGISVNIRHL TLIADFMTHT GSYRPMNRTG SIADSTSPFI
1601: KMCFETAGNF IVEAAYHGQV DNLETPSARI CLGLPVKMGT GCHDLIQKLE I
0101: QRTCFTCHHF RAPSKEVDIR TSQLELIMKG DIIRAKRLES IIPGKSVDSF NPDESIHPGD GDESQCYSAE QLGENWTSLQ FSEAMSVLRK LLTKKHKKCQ
0201: KCGAKNPKIS KPTFGWFHMN VLSADETRAD TIRSVESETT NDDISLGGGD TTDVEDITSA GTAKRDKRKK EKLSYKLAEQ NKLSGSLLPS QVKGILELLW
0301: ENEARLCSYI NDIQDQGFGK KAGHSMFFLE NIFVPPIKFR PPTKGGDNVM EHPQTVLLTK VLQCNISLGD AHLNKSDPSK VLSRWMDLQQ SVNMLFDNKT
0401: ASGKRDVATG ICQLLEKKEG IFRQKMMGKR VNFACRSVIS PDPYLAVNEI GIPPYFALRL SYPERVTPWN VVKLRNAILN GPESHPGATH YADKVSIVKL
0501: PPKGKLLSLT SRKLPTSRGV ILHQGKISDH EFEGKVVYRH LKDGDVVLVN RQPTLHKPSI MAHIVRVLKG EKTVRMHYAN CSTYNADFDG DEINVHFPQD
0601: EISRAEAYNI VNANNQYVKP TSGDPIRALI QDHIVSAALL TKKDTFLSYE EFNQLLYSSG VSMAGLGSFY GKHGQKVFIS NSESEMFLFP PAIWKPEPLW
0701: TGKQVISALL YYITRGSPPF TAEKNAKIPS NFFKTQIRKG KRYTEDTSKK KDKPDEDKLL IYKNDLVRGV VDKAQFGDYG MIHTVQELYG SNVAGNLLSA
0801: LSRLFTTFLQ MHGFTCGVDD LMLTEGKDVE RMNQLKSCEI IGDSVHREFI GVKNSDNIDP VTLQLNIEKK IRSNGEAALT LDRKMTSNLN SRTSSGILKK
0901: LLSEGILKPS GKNCISLMTT SGAKGSMVNF QQISSHLGQQ ELEGKRVPRM VSGKTLPCFP PWDCSPRAGG FIIDRFLTAL HPQEYYFHCM AGREGLVDTA
1001: VKTSRSGYLQ RCLMKNLECL KVCYDHTVRD ADGSIIQFHY GEDGVDVHQT SFITEFGALS TNKELVFSNY CRQLDRSSPY INKLPEALEG KAEKFSKQRN
1101: LGSMEQADFL RLMEHKYVSC LAQPGEPVGV LASQSVGEPA TQMTLNTFHL AGRGEMNVTL GIPRLQEILM AAARDIKTPF MTCPLRHDKS MKDAICLADK
1201: LKKITVADII KSMKVSVVPV TVLGGQVCSI YKLVMKLYKS KQYPEYTDIT LDDWEETLRV NFVRELEDAI QNHMTLLSKI SGIKKFKTDP QSNYSNSSED
1301: AHSNGSESEK KGQNNDDDDE DGGGVEDTEG YEDLGSDAQK RKLQGTDEVD YEDGPEEETH DGELSEEIEG DEDGSDVDAN ENYNNVTDAN NSEGLEKPSK
1401: SKTIDEKQNL KREKKKSEPT TKKYDRAIFV EAKGKHFEIH FRFTGEPHIL LTQIAQRTAK KVCIQNFGKV GECKAITCKE SGVIYYGKDG RKRIEISASE
1501: KEQIPALQTS GVHFKTFWEL EDDLDVRYIY SNNVHAMLNA YGVEAARETI IREVQNVFKS YGISVNIRHL TLIADFMTHT GSYRPMNRTG SIADSTSPFI
1601: KMCFETAGNF IVEAAYHGQV DNLETPSARI CLGLPVKMGT GCHDLIQKLE I
0001: MAHAQTTEGA SQVVESVRFS FMTEQDVRKH SFLKVTSPIL HDNVGNPFPG GLYDLKLGPK DDKQACNSCG QLKLACPGHC GHIELVFPIY HPLLFNLLFN
0101: FLQRACFFCH HFMAKPEDVE RAVSQLKLII KGDIVSAKQL ESNTPTKSKS SDESCESVVT TDSSEECEDS DVEDQRWTSL QFAEVTAVLK NFMRLSSKSC
0201: SRCKGINPKL EKPMFGWVRM RAMKDSDVGA NVIRGLKLKK STSSVENPDG FDDSGIDALS EVEDGDKETR EKSTEVAAEF EEHNSKRDLL PSEVRNILKH
0301: LWQNEHEFCS FIGDLWQSGS EKIDYSMFFL ESVLVPPTKF RPPTTGGDSV MEHPQTVGLN KVIESNNILG NACTNKLDQS KVIFRWRNLQ ESVNVLFDSK
0401: TATVQSQRDS SGICQLLEKK EGLFRQKMMG KRVNHACRSV ISPDPYIAVN DIGIPPCFAL KLTYPERVTP WNVEKLREAI INGPDIHPGA THYSDKSSTM
0501: KLPSTEKARR AIARKLLSSR GATTELGKTC DINFEGKTVH RHMRDGDIVL VNRQPTLHKP SLMAHKVRVL KGEKTLRLHY ANCSTYNADF DGDEMNVHFP
0601: QDEISRAEAY NIVNANNQYA RPSNGEPLRA LIQDHIVSSV LLTKRDTFLD KDHFNQLLFS SGVTDMVLST FSGRSGKKVM VSASDAELLT VTPAILKPVP
0701: LWTGKQVITA VLNQITKGHP PFTVEKATKL PVDFFKCRSR EVKPNSGDLT KKKEIDESWK QNLNEDKLHI RKNEFVCGVI DKAQFADYGL VHTVHELYGS
0801: NAAGNLLSVF SRLFTVFLQT HGFTCGVDDL IILKDMDEER TKQLQECENV GERVLRKTFG IDVDVQIDPQ DMRSRIERIL YEDGESALAS LDRSIVNYLN
0901: QCSSKGVMND LLSDGLLKTP GRNCISLMTI SGAKGSKVNF QQISSHLGQQ DLEGKRVPRM VSGKTLPCFH PWDWSPRAGG FISDRFLSGL RPQEYYFHCM
1001: AGREGLVDTA VKTSRSGYLQ RCLMKNLESL KVNYDCTVRD ADGSIIQFQY GEDGVDVHRS SFIEKFKELT INQDMVLQKC SEDMLSGASS YISDLPISLK
1101: KGAEKFVEAM PMNERIASKF VRQEELLKLV KSKFFASLAQ PGEPVGVLAA QSVGEPSTQM TLNTFHLAGR GEMNVTLGIP RLQEILMTAA ANIKTPIMTC
1201: PLLKGKTKED ANDITDRLRK ITVADIIKSM ELSVVPYTVY ENEVCSIHKL KINLYKPEHY PKHTDITEED WEETMRAVFL RKLEDAIETH MKMLHRIRGI
1301: HNDVTGPIAG NETDNDDSVS GKQNEDDGDD DGEGTEVDDL GSDAQKQKKQ ETDEMDYEEN SEDETNEPSS ISGVEDPEMD SENEDTEVSK EDTPEPQEES
1401: MEPQKEVKGV KNVKEQSKKK RRKFVRAKSD RHIFVKGEGE KFEVHFKFAT DDPHILLAQI AQQTAQKVYI QNSGKIERCT VANCGDPQVI YHGDNPKERR
1501: EISNDEKKAS PALHASGVDF PALWEFQDKL DVRYLYSNSI HDMLNIFGVE AARETIIREI NHVFKSYGIS VSIRHLNLIA DYMTFSGGYR PMSRMGGIAE
1601: STSPFCRMTF ETATKFIVQA ATYGEKDTLE TPSARICLGL PALSGTGCFD LMQRVEL
0101: FLQRACFFCH HFMAKPEDVE RAVSQLKLII KGDIVSAKQL ESNTPTKSKS SDESCESVVT TDSSEECEDS DVEDQRWTSL QFAEVTAVLK NFMRLSSKSC
0201: SRCKGINPKL EKPMFGWVRM RAMKDSDVGA NVIRGLKLKK STSSVENPDG FDDSGIDALS EVEDGDKETR EKSTEVAAEF EEHNSKRDLL PSEVRNILKH
0301: LWQNEHEFCS FIGDLWQSGS EKIDYSMFFL ESVLVPPTKF RPPTTGGDSV MEHPQTVGLN KVIESNNILG NACTNKLDQS KVIFRWRNLQ ESVNVLFDSK
0401: TATVQSQRDS SGICQLLEKK EGLFRQKMMG KRVNHACRSV ISPDPYIAVN DIGIPPCFAL KLTYPERVTP WNVEKLREAI INGPDIHPGA THYSDKSSTM
0501: KLPSTEKARR AIARKLLSSR GATTELGKTC DINFEGKTVH RHMRDGDIVL VNRQPTLHKP SLMAHKVRVL KGEKTLRLHY ANCSTYNADF DGDEMNVHFP
0601: QDEISRAEAY NIVNANNQYA RPSNGEPLRA LIQDHIVSSV LLTKRDTFLD KDHFNQLLFS SGVTDMVLST FSGRSGKKVM VSASDAELLT VTPAILKPVP
0701: LWTGKQVITA VLNQITKGHP PFTVEKATKL PVDFFKCRSR EVKPNSGDLT KKKEIDESWK QNLNEDKLHI RKNEFVCGVI DKAQFADYGL VHTVHELYGS
0801: NAAGNLLSVF SRLFTVFLQT HGFTCGVDDL IILKDMDEER TKQLQECENV GERVLRKTFG IDVDVQIDPQ DMRSRIERIL YEDGESALAS LDRSIVNYLN
0901: QCSSKGVMND LLSDGLLKTP GRNCISLMTI SGAKGSKVNF QQISSHLGQQ DLEGKRVPRM VSGKTLPCFH PWDWSPRAGG FISDRFLSGL RPQEYYFHCM
1001: AGREGLVDTA VKTSRSGYLQ RCLMKNLESL KVNYDCTVRD ADGSIIQFQY GEDGVDVHRS SFIEKFKELT INQDMVLQKC SEDMLSGASS YISDLPISLK
1101: KGAEKFVEAM PMNERIASKF VRQEELLKLV KSKFFASLAQ PGEPVGVLAA QSVGEPSTQM TLNTFHLAGR GEMNVTLGIP RLQEILMTAA ANIKTPIMTC
1201: PLLKGKTKED ANDITDRLRK ITVADIIKSM ELSVVPYTVY ENEVCSIHKL KINLYKPEHY PKHTDITEED WEETMRAVFL RKLEDAIETH MKMLHRIRGI
1301: HNDVTGPIAG NETDNDDSVS GKQNEDDGDD DGEGTEVDDL GSDAQKQKKQ ETDEMDYEEN SEDETNEPSS ISGVEDPEMD SENEDTEVSK EDTPEPQEES
1401: MEPQKEVKGV KNVKEQSKKK RRKFVRAKSD RHIFVKGEGE KFEVHFKFAT DDPHILLAQI AQQTAQKVYI QNSGKIERCT VANCGDPQVI YHGDNPKERR
1501: EISNDEKKAS PALHASGVDF PALWEFQDKL DVRYLYSNSI HDMLNIFGVE AARETIIREI NHVFKSYGIS VSIRHLNLIA DYMTFSGGYR PMSRMGGIAE
1601: STSPFCRMTF ETATKFIVQA ATYGEKDTLE TPSARICLGL PALSGTGCFD LMQRVEL
Arabidopsis Description
NRPA1DNA-directed RNA polymerase I subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVY0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.