Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH13386 | Soybean | nucleus | 88.07 | 85.45 |
| VIT_13s0067g03120.t01 | Wine grape | nucleus | 33.22 | 67.37 |
| Solyc01g096390.2.1 | Tomato | nucleus | 45.69 | 55.01 |
| CDY60335 | Canola | nucleus | 44.46 | 48.05 |
| GSMUA_Achr3P05700_001 | Banana | nucleus | 33.42 | 47.1 |
| AT2G40030.1 | Thale cress | nucleus | 45.84 | 46.86 |
| Bra000162.1-P | Field mustard | nucleus | 45.4 | 44.54 |
| TraesCS6B01G094400.1 | Wheat | nucleus | 33.86 | 42.94 |
| TraesCS6B01G151900.1 | Wheat | nucleus | 39.01 | 40.45 |
| TraesCS6D01G113900.1 | Wheat | nucleus | 38.96 | 40.42 |
| TraesCS6A01G123800.1 | Wheat | nucleus | 39.11 | 40.35 |
| HORVU6Hr1G022890.1 | Barley | nucleus | 39.26 | 40.21 |
| Zm00001d053872_P021 | Maize | nucleus | 38.56 | 39.97 |
| OQU84386 | Sorghum | nucleus | 39.06 | 39.16 |
| CDY07630 | Canola | nucleus | 30.64 | 27.01 |
| KRH27976 | Soybean | nucleus | 16.93 | 23.52 |
| KRH77477 | Soybean | nucleus | 16.53 | 22.92 |
| KRG88695 | Soybean | nucleus | 12.08 | 17.54 |
| KRH28855 | Soybean | nucleus | 15.15 | 16.75 |
| KRH76591 | Soybean | nucleus | 15.1 | 16.69 |
| KRH40807 | Soybean | nucleus | 14.6 | 16.65 |
| KRH71957 | Soybean | nucleus | 10.35 | 16.23 |
| KRH33046 | Soybean | nucleus | 12.67 | 15.51 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.20.120.1280 | EntrezGene:100785844 | MapMan:15.1.5.1 | Gene3D:2.40.40.20 |
| Gene3D:3.10.450.40 | Gene3D:3.30.1490.180 | UniProt:A0A0R0GY74 | EMBL:ACUP02008300 | EnsemblPlantsGene:GLYMA_13G196900 | GO:GO:0001056 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005666 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006383 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016779 | EnsemblPlants:KRH20723 | ProteinID:KRH20723 | ProteinID:KRH20723.1 |
| PFAM:PF00623 | PFAM:PF04983 | PFAM:PF04997 | PFAM:PF04998 | PFAM:PF11523 | PANTHER:PTHR19376 |
| PANTHER:PTHR19376:SF36 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu |
| SMART:SM00663 | SUPFAM:SSF64484 | UniParc:UPI0006EDF65A | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr13:+:31055891..31072513
Molecular Weight (calculated)
223425.0 Da
IEP (calculated)
6.338
GRAVY (calculated)
-0.533
Length
2020 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEDNPPSSVL DGTVVGIKFG MATRQEICTA SISESSISHA SQLSNPFLGL PLEFGRCESC GTSEVGKCEG HFGYVELPVP IYHPSHISEL KRMLSVVCLN
0101: CLKMRKTKFP ASSSGLAQRL ISPCCQDVNA ALVSIREVKT SDGACYLALK VSKSKIHDGF WSFLEKYGYR YEGDETRALL PCEAMEIIKR IPIETKKKLA
0201: GKGFFPQDGY VLKYLPVPPN CLSVPEVSDG ASVMSSDPSM TILRKLLRKV EIIKSSRSGE PNFESHHVEA NDLQSVVDQY FQIRGTSKPA RDIETHFGVN
0301: KELTASSTKA WLEKMRTLFI RKGSGFSSRN VITGDCYKRI NEVGIPVEVA QRITFEERVN IHNIRYLQKL VDEHLCLTYK EGVSTYSLRE GSKGHIYLKP
0401: GQIVHRRIMD GDIVFINRPP TTHKHSLQAL YVYIHEDHTV KINPLICGPL GADFDGDCVH LFYPQSLAAK AEVVELFAVE NQLLSSHSGN LNLQLSTDSL
0501: LALKMLVKRC FLGRAAANQL AMFLLLPLPR PALLKASSDD ACWTSIQILQ GALPMGFDCT GGRYLIRQSE ILEFDFSRDA LPATINEIAA SIFFGKGPME
0601: ALKFFDVLQP FLMESLFAEG FSVSLEEFSI SRAIKRIIRR SIGKASSLLY QLRSLYNELV AQQLEKHIQD VELPIINFAL KSTKLGDLID SKSKSTIDKV
0701: VQQVGFLGQQ LFDRGRFYSK GLVDDVASHF HAKCCYDGDG YPSAEYGLLK GCFFNGLDPY EEMVHSISTR EIMVRSSRGL SEPGTLFKNL MAILRDVVIC
0801: YDGTVRNICS NSIIQFEYGI QAGDKTEHLF PAGEPVGVLA ATAMSNPAYK AVLDASPNSN SSWELMKEIL LCKVNFRNEP VDRRVILYLN DCDCGGSCCR
0901: ENAAYSVKNQ LRKVSLKNAA VEFIIEYQQQ RTQKENSETD AGLVGHIYLD EMMLEELKIS MANVFEKCLE RLKSFSRKKK VNQYLKNIEL SFSESCSSSH
1001: PAAPCLTFWL KNHDSDLDNA VKVLSENICP VLFETIIKGD PRISSASIIW VSPDTNTWVR NPYKSSNGEL ALDIVLEEEA VKQSGDAWRI VLDSCLPVLH
1101: LIDTRRSIPY AIKQIQELLG ISCTFDQAIQ RVAASVKMVA KGVLREHLIL LASSMTCGGN LVGFNTGGYK ALSRQLNIQV PFTDATLFTP KKCFERAAEK
1201: CHTDSLSSIV ASCSWGKHVA VGTGSKFDIV WDSSEIKSNE IEGMDVYSFL HMVKSVTNGE EETDACLGED IDDLLEEEYM DLGMSPQHNS GFEAVFEENP
1301: EVLNGSTSNG WDVSSNQTQS KTNEWSGWAS SNKDGRSETA QENSWGKTVN QEDSSKSNAW NTSTTADQTK TKSNEWSDWG SNKSEIPAGG SKAVQEDSSK
1401: SNAWNTSTTS NQTKTKSKEW SAWGSNKSEI PACGSKAVQE DSSKSNTWNT STTADQTKTK SNEWSAWGSN KSEIPAGGSK AVQEDSSKSN AWNTSTTVDQ
1501: TKTKSNEWSA WESNKSEIPA GGSKAVQEDS SKSNAWNRST TADQTKTKSN EWSAWGSNKS EIPAGGSKAV QEDSSKAWNT STTADQTKTK SNEWSARVSN
1601: KSEIPAGGSK AVQEDSWGSS KWKADVAQED NSRLGAWDAN AADQTKSNEW SGWGKKKDVT QEDNVQHSWG SGKRKDKVTQ EDNSGSGDWG ANRTDLAITK
1701: SSEWSSWGKN KTEIPAGGSA NVQNDSWGLG KLNDTQKDNS GCGAWGENSG SAWVRNKAET IDGGSEKPQE DAWNSGNWKA ESKVGNTTWG KPKSSESHAW
1801: DSHNQSNQNS SSQGWESHIA SANSENEKGF QWGKGRDSFK KNRFEGSQGR GSNAGDWKNR NRPPRAPGQR LDIYSSEEQD VLKDIEPIMQ SIRRIMQQQG
1901: YSDGDPLAAE DQLFVLENVF EHHPDKETKM GAGIDYVMVN KHSSFQESRC FYVVCKDGQS KDFSYRKCLA NYISKKYPDL AESFLGKYFR KPRARGDQTA
2001: TLGGDQTATP AQDEAATSGE
0101: CLKMRKTKFP ASSSGLAQRL ISPCCQDVNA ALVSIREVKT SDGACYLALK VSKSKIHDGF WSFLEKYGYR YEGDETRALL PCEAMEIIKR IPIETKKKLA
0201: GKGFFPQDGY VLKYLPVPPN CLSVPEVSDG ASVMSSDPSM TILRKLLRKV EIIKSSRSGE PNFESHHVEA NDLQSVVDQY FQIRGTSKPA RDIETHFGVN
0301: KELTASSTKA WLEKMRTLFI RKGSGFSSRN VITGDCYKRI NEVGIPVEVA QRITFEERVN IHNIRYLQKL VDEHLCLTYK EGVSTYSLRE GSKGHIYLKP
0401: GQIVHRRIMD GDIVFINRPP TTHKHSLQAL YVYIHEDHTV KINPLICGPL GADFDGDCVH LFYPQSLAAK AEVVELFAVE NQLLSSHSGN LNLQLSTDSL
0501: LALKMLVKRC FLGRAAANQL AMFLLLPLPR PALLKASSDD ACWTSIQILQ GALPMGFDCT GGRYLIRQSE ILEFDFSRDA LPATINEIAA SIFFGKGPME
0601: ALKFFDVLQP FLMESLFAEG FSVSLEEFSI SRAIKRIIRR SIGKASSLLY QLRSLYNELV AQQLEKHIQD VELPIINFAL KSTKLGDLID SKSKSTIDKV
0701: VQQVGFLGQQ LFDRGRFYSK GLVDDVASHF HAKCCYDGDG YPSAEYGLLK GCFFNGLDPY EEMVHSISTR EIMVRSSRGL SEPGTLFKNL MAILRDVVIC
0801: YDGTVRNICS NSIIQFEYGI QAGDKTEHLF PAGEPVGVLA ATAMSNPAYK AVLDASPNSN SSWELMKEIL LCKVNFRNEP VDRRVILYLN DCDCGGSCCR
0901: ENAAYSVKNQ LRKVSLKNAA VEFIIEYQQQ RTQKENSETD AGLVGHIYLD EMMLEELKIS MANVFEKCLE RLKSFSRKKK VNQYLKNIEL SFSESCSSSH
1001: PAAPCLTFWL KNHDSDLDNA VKVLSENICP VLFETIIKGD PRISSASIIW VSPDTNTWVR NPYKSSNGEL ALDIVLEEEA VKQSGDAWRI VLDSCLPVLH
1101: LIDTRRSIPY AIKQIQELLG ISCTFDQAIQ RVAASVKMVA KGVLREHLIL LASSMTCGGN LVGFNTGGYK ALSRQLNIQV PFTDATLFTP KKCFERAAEK
1201: CHTDSLSSIV ASCSWGKHVA VGTGSKFDIV WDSSEIKSNE IEGMDVYSFL HMVKSVTNGE EETDACLGED IDDLLEEEYM DLGMSPQHNS GFEAVFEENP
1301: EVLNGSTSNG WDVSSNQTQS KTNEWSGWAS SNKDGRSETA QENSWGKTVN QEDSSKSNAW NTSTTADQTK TKSNEWSDWG SNKSEIPAGG SKAVQEDSSK
1401: SNAWNTSTTS NQTKTKSKEW SAWGSNKSEI PACGSKAVQE DSSKSNTWNT STTADQTKTK SNEWSAWGSN KSEIPAGGSK AVQEDSSKSN AWNTSTTVDQ
1501: TKTKSNEWSA WESNKSEIPA GGSKAVQEDS SKSNAWNRST TADQTKTKSN EWSAWGSNKS EIPAGGSKAV QEDSSKAWNT STTADQTKTK SNEWSARVSN
1601: KSEIPAGGSK AVQEDSWGSS KWKADVAQED NSRLGAWDAN AADQTKSNEW SGWGKKKDVT QEDNVQHSWG SGKRKDKVTQ EDNSGSGDWG ANRTDLAITK
1701: SSEWSSWGKN KTEIPAGGSA NVQNDSWGLG KLNDTQKDNS GCGAWGENSG SAWVRNKAET IDGGSEKPQE DAWNSGNWKA ESKVGNTTWG KPKSSESHAW
1801: DSHNQSNQNS SSQGWESHIA SANSENEKGF QWGKGRDSFK KNRFEGSQGR GSNAGDWKNR NRPPRAPGQR LDIYSSEEQD VLKDIEPIMQ SIRRIMQQQG
1901: YSDGDPLAAE DQLFVLENVF EHHPDKETKM GAGIDYVMVN KHSSFQESRC FYVVCKDGQS KDFSYRKCLA NYISKKYPDL AESFLGKYFR KPRARGDQTA
2001: TLGGDQTATP AQDEAATSGE
0001: MEEESTSEIL DGEIVGITFA LASHHEICIQ SISESAINHP SQLTNAFLGL PLEFGKCESC GATEPDKCEG HFGYIQLPVP IYHPAHVNEL KQMLSLLCLK
0101: CLKIKKAKGT SGGLADRLLG VCCEEASQIS IKDRASDGAS YLELKLPSRS RLQPGCWNFL ERYGYRYGSD YTRPLLAREV KEILRRIPEE SRKKLTAKGH
0201: IPQEGYILEY LPVPPNCLSV PEASDGFSTM SVDPSRIELK DVLKKVIAIK SSRSGETNFE SHKAEASEMF RVVDTYLQVR GTAKAARNID MRYGVSKISD
0301: SSSSKAWTEK MRTLFIRKGS GFSSRSVITG DAYRHVNEVG IPIEIAQRIT FEERVSVHNR GYLQKLVDDK LCLSYTQGST TYSLRDGSKG HTELKPGQVV
0401: HRRVMDGDVV FINRPPTTHK HSLQALRVYV HEDNTVKINP LMCSPLSADF DGDCVHLFYP QSLSAKAEVM ELFSVEKQLL SSHTGQLILQ MGSDSLLSLR
0501: VMLERVFLDK ATAQQLAMYG SLSLPPPALR KSSKSGPAWT VFQILQLAFP ERLSCKGDRF LVDGSDLLKF DFGVDAMGSI INEIVTSIFL EKGPKETLGF
0601: FDSLQPLLME SLFAEGFSLS LEDLSMSRAD MDVIHNLIIR EISPMVSRLR LSYRDELQLE NSIHKVKEVA ANFMLKSYSI RNLIDIKSNS AITKLVQQTG
0701: FLGLQLSDKK KFYTKTLVED MAIFCKRKYG RISSSGDFGI VKGCFFHGLD PYEEMAHSIA AREVIVRSSR GLAEPGTLFK NLMAVLRDIV ITNDGTVRNT
0801: CSNSVIQFKY GVDSERGHQG LFEAGEPVGV LAATAMSNPA YKAVLDSSPN SNSSWELMKE VLLCKVNFQN TTNDRRVILY LNECHCGKRF CQENAACTVR
0901: NKLNKVSLKD TAVEFLVEYR KQPTISEIFG IDSCLHGHIH LNKTLLQDWN ISMQDIHQKC EDVINSLGQK KKKKATDDFK RTSLSVSECC SFRDPCGSKG
1001: SDMPCLTFSY NATDPDLERT LDVLCNTVYP VLLEIVIKGD SRICSANIIW NSSDMTTWIR NRHASRRGEW VLDVTVEKSA VKQSGDAWRV VIDSCLSVLH
1101: LIDTKRSIPY SVKQVQELLG LSCAFEQAVQ RLSASVRMVS KGVLKEHIIL LANNMTCSGT MLGFNSGGYK ALTRSLNIKA PFTEATLIAP RKCFEKAAEK
1201: CHTDSLSTVV GSCSWGKRVD VGTGSQFELL WNQKETGLDD KEETDVYSFL QMVISTTNAD AFVSSPGFDV TEEEMAEWAE SPERDSALGE PKFEDSADFQ
1301: NLHDEGKPSG ANWEKSSSWD NGCSGGSEWG VSKSTGGEAN PESNWEKTTN VEKEDAWSSW NTRKDAQESS KSDSGGAWGI KTKDADADTT PNWETSPAPK
1401: DSIVPENNEP TSDVWGHKSV SDKSWDKKNW GTESAPAAWG STDAAVWGSS DKKNSETESD AAAWGSRDKN NSDVGSGAGV LGPWNKKSSE TESNGATWGS
1501: SDKTKSGAAA WNSWDKKNIE TDSEPAAWGS QGKKNSETES GPAAWGAWDK KKSETEPGPA GWGMGDKKNS ETELGPAAMG NWDKKKSDTK SGPAAWGSTD
1601: AAAWGSSDKN NSETESDAAA WGSRNKKTSE IESGAGAWGS WGQPSPTAED KDTNEDDRNP WVSLKETKSR EKDDKERSQW GNPAKKFPSS GGWSNGGGAD
1701: WKGNRNHTPR PPRSEDNLAP MFTATRQRLD SFTSEEQELL SDVEPVMRTL RKIMHPSAYP DGDPISDDDK TFVLEKILNF HPQKETKLGS GVDFITVDKH
1801: TIFSDSRCFF VVSTDGAKQD FSYRKSLNNY LMKKYPDRAE EFIDKYFTKP RPSGNRDRNN QDATPPGEEQ SQPPNQSIGN GGDDFQTQTQ SQSPSQTRAQ
1901: SPSQAQAQSP SQTQSQSQSQ SQSQSQSQSQ SQSQSQSQSQ SQSQSQSPSQ TQTQSPSQTQ AQAQSPSSQS PSQTQT
0101: CLKIKKAKGT SGGLADRLLG VCCEEASQIS IKDRASDGAS YLELKLPSRS RLQPGCWNFL ERYGYRYGSD YTRPLLAREV KEILRRIPEE SRKKLTAKGH
0201: IPQEGYILEY LPVPPNCLSV PEASDGFSTM SVDPSRIELK DVLKKVIAIK SSRSGETNFE SHKAEASEMF RVVDTYLQVR GTAKAARNID MRYGVSKISD
0301: SSSSKAWTEK MRTLFIRKGS GFSSRSVITG DAYRHVNEVG IPIEIAQRIT FEERVSVHNR GYLQKLVDDK LCLSYTQGST TYSLRDGSKG HTELKPGQVV
0401: HRRVMDGDVV FINRPPTTHK HSLQALRVYV HEDNTVKINP LMCSPLSADF DGDCVHLFYP QSLSAKAEVM ELFSVEKQLL SSHTGQLILQ MGSDSLLSLR
0501: VMLERVFLDK ATAQQLAMYG SLSLPPPALR KSSKSGPAWT VFQILQLAFP ERLSCKGDRF LVDGSDLLKF DFGVDAMGSI INEIVTSIFL EKGPKETLGF
0601: FDSLQPLLME SLFAEGFSLS LEDLSMSRAD MDVIHNLIIR EISPMVSRLR LSYRDELQLE NSIHKVKEVA ANFMLKSYSI RNLIDIKSNS AITKLVQQTG
0701: FLGLQLSDKK KFYTKTLVED MAIFCKRKYG RISSSGDFGI VKGCFFHGLD PYEEMAHSIA AREVIVRSSR GLAEPGTLFK NLMAVLRDIV ITNDGTVRNT
0801: CSNSVIQFKY GVDSERGHQG LFEAGEPVGV LAATAMSNPA YKAVLDSSPN SNSSWELMKE VLLCKVNFQN TTNDRRVILY LNECHCGKRF CQENAACTVR
0901: NKLNKVSLKD TAVEFLVEYR KQPTISEIFG IDSCLHGHIH LNKTLLQDWN ISMQDIHQKC EDVINSLGQK KKKKATDDFK RTSLSVSECC SFRDPCGSKG
1001: SDMPCLTFSY NATDPDLERT LDVLCNTVYP VLLEIVIKGD SRICSANIIW NSSDMTTWIR NRHASRRGEW VLDVTVEKSA VKQSGDAWRV VIDSCLSVLH
1101: LIDTKRSIPY SVKQVQELLG LSCAFEQAVQ RLSASVRMVS KGVLKEHIIL LANNMTCSGT MLGFNSGGYK ALTRSLNIKA PFTEATLIAP RKCFEKAAEK
1201: CHTDSLSTVV GSCSWGKRVD VGTGSQFELL WNQKETGLDD KEETDVYSFL QMVISTTNAD AFVSSPGFDV TEEEMAEWAE SPERDSALGE PKFEDSADFQ
1301: NLHDEGKPSG ANWEKSSSWD NGCSGGSEWG VSKSTGGEAN PESNWEKTTN VEKEDAWSSW NTRKDAQESS KSDSGGAWGI KTKDADADTT PNWETSPAPK
1401: DSIVPENNEP TSDVWGHKSV SDKSWDKKNW GTESAPAAWG STDAAVWGSS DKKNSETESD AAAWGSRDKN NSDVGSGAGV LGPWNKKSSE TESNGATWGS
1501: SDKTKSGAAA WNSWDKKNIE TDSEPAAWGS QGKKNSETES GPAAWGAWDK KKSETEPGPA GWGMGDKKNS ETELGPAAMG NWDKKKSDTK SGPAAWGSTD
1601: AAAWGSSDKN NSETESDAAA WGSRNKKTSE IESGAGAWGS WGQPSPTAED KDTNEDDRNP WVSLKETKSR EKDDKERSQW GNPAKKFPSS GGWSNGGGAD
1701: WKGNRNHTPR PPRSEDNLAP MFTATRQRLD SFTSEEQELL SDVEPVMRTL RKIMHPSAYP DGDPISDDDK TFVLEKILNF HPQKETKLGS GVDFITVDKH
1801: TIFSDSRCFF VVSTDGAKQD FSYRKSLNNY LMKKYPDRAE EFIDKYFTKP RPSGNRDRNN QDATPPGEEQ SQPPNQSIGN GGDDFQTQTQ SQSPSQTRAQ
1901: SPSQAQAQSP SQTQSQSQSQ SQSQSQSQSQ SQSQSQSQSQ SQSQSQSPSQ TQTQSPSQTQ AQAQSPSSQS PSQTQT
Arabidopsis Description
NRPE1DNA-directed RNA polymerase V subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5D869]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.