Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G151900.1 | Wheat | nucleus | 96.83 | 97.33 |
| TraesCS6D01G113900.1 | Wheat | nucleus | 96.63 | 97.18 |
| HORVU6Hr1G022890.1 | Barley | nucleus | 94.02 | 93.36 |
| Zm00001d053872_P021 | Maize | nucleus | 63.33 | 63.62 |
| OQU84386 | Sorghum | nucleus | 64.3 | 62.48 |
| VIT_13s0067g03120.t01 | Wine grape | nucleus | 28.09 | 55.22 |
| GSMUA_Achr3P05700_001 | Banana | nucleus | 36.26 | 49.55 |
| Solyc01g096390.2.1 | Tomato | nucleus | 39.63 | 46.25 |
| TraesCS3A01G513100.1 | Wheat | plastid | 35.6 | 42.06 |
| CDY60335 | Canola | nucleus | 37.33 | 39.11 |
| KRH20723 | Soybean | nucleus | 40.35 | 39.11 |
| KRH13386 | Soybean | nucleus | 40.7 | 38.28 |
| AT2G40030.1 | Thale cress | nucleus | 38.61 | 38.26 |
| Bra000162.1-P | Field mustard | nucleus | 38.46 | 36.57 |
| TraesCS1A01G106300.1 | Wheat | nucleus | 17.01 | 23.37 |
| CDY07630 | Canola | nucleus | 26.0 | 22.21 |
| TraesCS7A01G180700.1 | Wheat | cytosol | 9.86 | 22.16 |
| TraesCS1A01G114500.1 | Wheat | nucleus | 6.49 | 18.33 |
| TraesCS3A01G455500.1 | Wheat | nucleus | 12.51 | 17.56 |
| TraesCS7A01G301900.1 | Wheat | nucleus | 16.34 | 17.21 |
| TraesCS2A01G558100.1 | Wheat | nucleus | 16.19 | 17.06 |
| TraesCS1A01G114600.1 | Wheat | mitochondrion | 6.03 | 16.46 |
| TraesCS4A01G357100.1 | Wheat | nucleus | 12.61 | 14.92 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.274.100 | Gene3D:1.20.120.1280 | MapMan:15.1.5.1 | Gene3D:2.40.40.20 |
| Gene3D:3.10.450.40 | Gene3D:3.30.1490.180 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 |
| GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | PFAM:PF00623 | PFAM:PF04983 | PFAM:PF04997 |
| PFAM:PF04998 | PFAM:PF11523 | PANTHER:PTHR19376 | PANTHER:PTHR19376:SF36 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 |
| InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_Rpb1_5 | InterPro:RNA_pol_asu | SMART:SM00663 | SUPFAM:SSF64484 | EnsemblPlantsGene:TraesCS6A01G123800 |
| EnsemblPlants:TraesCS6A01G123800.1 | TIGR:cd02737 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr6A:-:97808899..97823814
Molecular Weight (calculated)
213808.0 Da
IEP (calculated)
5.247
GRAVY (calculated)
-0.482
Length
1958 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEEEDQSAVL VAEGAIKSIK LSLSTEEEIC TYSINDCPVT HPSQLGNPFL GLPLETGKCE SCGATENGKC EGHFGFIELP VPVYHPCHVS ELRQLLSMVC
0101: LKCLRIKKGK VKQKNGKENV SVTACHYCRG LPALYLKEIK TEDGAFRLEL RAPPKKHMTE RSWDFLDKYG GFHHGGASHC RTLLPVEAFN ILKKIPDDTK
0201: KKLAARGFIA QPGYVMKYLP VPPNCLYIPE FTDGQSIMSY DISISLLKKI LQKIEQIKKS RSGSPNFESH DSESADLQHS IGQYIQLRGT TKGPQDAKRF
0301: AVSTDSSHLS TKQWLEKMRT LFISKGSGFS SRSVLTGDPY IGADVVGLPS EVAKRITFEE QVTDININRL QEVVDKGLCL TYRDGQTTYA ITVGSKGYTT
0401: LKVGQTISRR IVDGDVVFLN RPPSTHKHSL QAFTVYIHDD HTVKINPLIC SPLAADFDGD CVHIYYPQSL AAKAEALELF SVEKQLTNSH NGKVNLQLAN
0501: DSLLALKHMS SRTMLSKESA NQLAMLLSLS LPPPAVVKSK PCWTIAQIMQ SALPAELTCE GDRFLVRDST VIRLDIDKES VQASFSDLVS SILAVKGPGD
0601: ALKFLNALQP LLMEFLLLDG FSVSLQDFSV PKPLLEEAQE CIKKQSLVLE QSRCSSSQSV ETRVDNNLKD VKQQIADFVV KSSRLGLLID PKSDSSVSKV
0701: VQQLAFVGPQ LYREGKFYSR CLVDDCFSSF VNRHPPIEDG VQHPPEAYGL VRSAYFHGLN PYEELVHSIC TRETIVRSSR GLTEPGTLFK SLMAILRDVV
0801: ICYDGTVRNI CSNSIMQLKY KEEDDTDFPS AIAPGEPVGV LAATAISNPA YKAVLDSSQS NNTSWELMKE ILKTKVSYKN DAKDRKVILF LNDCSCPKKF
0901: CKEKAAIAVQ GCLKRVTLED CATDICIEYK KQVSLDAISE ATPAFVGHIH LEKAHLEKIN VSTDEILQKC QEVSGKHANK KGTLGHLFKK ITFSTCDCSF
1001: AQKPGDGKVP CLQFSFSEDI PMLSDSVEKA VNVLADSLCG VLLEIIIKGD PRVQEAKITW VGSDATSWVK HTKKISKGEP AVEIIVEKKE AMQNGDAWRI
1101: AMDACIPVMN LIDTQRSIPY GIQQVRELLG ISCSFDQVVQ RLSKTMKTVA KGILKDHLVL VANSMTCTGN LNGFHNGGYR ATFRSLKVQV PFTEATLLTP
1201: MKCFEKAAEK CHSDSLGSVV SSCSWGKHAA LGTGSSFQIL WNENQLKSNK EYGDGLYDFL ALVRTDQEKA AYTFLDDVDY LVEDNAMDDI CLSPEMDGIH
1301: GMPTFEDDPE QQNTEKDSSW ENGTTAGASW EQNANAGNDS GNWGGGSTVE NDSTDWAGWG TGPANDKKIV SGEPAEPDTW ADQGAKKDTE GGWNNAAAAG
1401: DTGAAKPAEQ DKSCWNAPPA VENDSSGWGG WGTGNAKDKN IASEGSAEVD TWADQSGKRD TDGGGASWDK MKVKDHNMQQ DQWGHVPTQN VDAQDDPWGS
1501: VAGVAQPSTA KHIDAQNDSW GSMAAKAQTY ARDDSWGSVA AKTSTAEPMD TKNDSWGSVA AKASITEPMD AGNGSWGSVA AKAQTSTAQQ ESWGNVSASP
1601: SDNAWGAAPV SQGPDNSDAK QPDSWDGWGS AAPVSQGDSS DAKQPDSWDG WGSAQADDSS TDKWKTNASG NNKGWKADGW EAKENRRDQR DNPGRPQMRP
1701: PVERPPRPRY ELPAEAKKVL QEIEPIVTMV RKIFRESSDG IRLPLEDEKF IIEKVLEHHP EKEKKVSGEI DHIMVNKHHV FQDSRCFYVV SSDGTQTDFS
1801: YIKCMDNYVR KNHEEHAELI CEMHFKKRNR DRPPTVDGGA APATEAGASQ PAPGEDLEAA LPGPPPGTPP PSAITQQETP ASPAAAPEDD LPLPPPPPLT
1901: QHEEDGTPED DLPLPPPPPL PQQEAGAPGS APEAGAVDDK WAGGGDDKWA GGPDDKWV
0101: LKCLRIKKGK VKQKNGKENV SVTACHYCRG LPALYLKEIK TEDGAFRLEL RAPPKKHMTE RSWDFLDKYG GFHHGGASHC RTLLPVEAFN ILKKIPDDTK
0201: KKLAARGFIA QPGYVMKYLP VPPNCLYIPE FTDGQSIMSY DISISLLKKI LQKIEQIKKS RSGSPNFESH DSESADLQHS IGQYIQLRGT TKGPQDAKRF
0301: AVSTDSSHLS TKQWLEKMRT LFISKGSGFS SRSVLTGDPY IGADVVGLPS EVAKRITFEE QVTDININRL QEVVDKGLCL TYRDGQTTYA ITVGSKGYTT
0401: LKVGQTISRR IVDGDVVFLN RPPSTHKHSL QAFTVYIHDD HTVKINPLIC SPLAADFDGD CVHIYYPQSL AAKAEALELF SVEKQLTNSH NGKVNLQLAN
0501: DSLLALKHMS SRTMLSKESA NQLAMLLSLS LPPPAVVKSK PCWTIAQIMQ SALPAELTCE GDRFLVRDST VIRLDIDKES VQASFSDLVS SILAVKGPGD
0601: ALKFLNALQP LLMEFLLLDG FSVSLQDFSV PKPLLEEAQE CIKKQSLVLE QSRCSSSQSV ETRVDNNLKD VKQQIADFVV KSSRLGLLID PKSDSSVSKV
0701: VQQLAFVGPQ LYREGKFYSR CLVDDCFSSF VNRHPPIEDG VQHPPEAYGL VRSAYFHGLN PYEELVHSIC TRETIVRSSR GLTEPGTLFK SLMAILRDVV
0801: ICYDGTVRNI CSNSIMQLKY KEEDDTDFPS AIAPGEPVGV LAATAISNPA YKAVLDSSQS NNTSWELMKE ILKTKVSYKN DAKDRKVILF LNDCSCPKKF
0901: CKEKAAIAVQ GCLKRVTLED CATDICIEYK KQVSLDAISE ATPAFVGHIH LEKAHLEKIN VSTDEILQKC QEVSGKHANK KGTLGHLFKK ITFSTCDCSF
1001: AQKPGDGKVP CLQFSFSEDI PMLSDSVEKA VNVLADSLCG VLLEIIIKGD PRVQEAKITW VGSDATSWVK HTKKISKGEP AVEIIVEKKE AMQNGDAWRI
1101: AMDACIPVMN LIDTQRSIPY GIQQVRELLG ISCSFDQVVQ RLSKTMKTVA KGILKDHLVL VANSMTCTGN LNGFHNGGYR ATFRSLKVQV PFTEATLLTP
1201: MKCFEKAAEK CHSDSLGSVV SSCSWGKHAA LGTGSSFQIL WNENQLKSNK EYGDGLYDFL ALVRTDQEKA AYTFLDDVDY LVEDNAMDDI CLSPEMDGIH
1301: GMPTFEDDPE QQNTEKDSSW ENGTTAGASW EQNANAGNDS GNWGGGSTVE NDSTDWAGWG TGPANDKKIV SGEPAEPDTW ADQGAKKDTE GGWNNAAAAG
1401: DTGAAKPAEQ DKSCWNAPPA VENDSSGWGG WGTGNAKDKN IASEGSAEVD TWADQSGKRD TDGGGASWDK MKVKDHNMQQ DQWGHVPTQN VDAQDDPWGS
1501: VAGVAQPSTA KHIDAQNDSW GSMAAKAQTY ARDDSWGSVA AKTSTAEPMD TKNDSWGSVA AKASITEPMD AGNGSWGSVA AKAQTSTAQQ ESWGNVSASP
1601: SDNAWGAAPV SQGPDNSDAK QPDSWDGWGS AAPVSQGDSS DAKQPDSWDG WGSAQADDSS TDKWKTNASG NNKGWKADGW EAKENRRDQR DNPGRPQMRP
1701: PVERPPRPRY ELPAEAKKVL QEIEPIVTMV RKIFRESSDG IRLPLEDEKF IIEKVLEHHP EKEKKVSGEI DHIMVNKHHV FQDSRCFYVV SSDGTQTDFS
1801: YIKCMDNYVR KNHEEHAELI CEMHFKKRNR DRPPTVDGGA APATEAGASQ PAPGEDLEAA LPGPPPGTPP PSAITQQETP ASPAAAPEDD LPLPPPPPLT
1901: QHEEDGTPED DLPLPPPPPL PQQEAGAPGS APEAGAVDDK WAGGGDDKWA GGPDDKWV
0001: MEEESTSEIL DGEIVGITFA LASHHEICIQ SISESAINHP SQLTNAFLGL PLEFGKCESC GATEPDKCEG HFGYIQLPVP IYHPAHVNEL KQMLSLLCLK
0101: CLKIKKAKGT SGGLADRLLG VCCEEASQIS IKDRASDGAS YLELKLPSRS RLQPGCWNFL ERYGYRYGSD YTRPLLAREV KEILRRIPEE SRKKLTAKGH
0201: IPQEGYILEY LPVPPNCLSV PEASDGFSTM SVDPSRIELK DVLKKVIAIK SSRSGETNFE SHKAEASEMF RVVDTYLQVR GTAKAARNID MRYGVSKISD
0301: SSSSKAWTEK MRTLFIRKGS GFSSRSVITG DAYRHVNEVG IPIEIAQRIT FEERVSVHNR GYLQKLVDDK LCLSYTQGST TYSLRDGSKG HTELKPGQVV
0401: HRRVMDGDVV FINRPPTTHK HSLQALRVYV HEDNTVKINP LMCSPLSADF DGDCVHLFYP QSLSAKAEVM ELFSVEKQLL SSHTGQLILQ MGSDSLLSLR
0501: VMLERVFLDK ATAQQLAMYG SLSLPPPALR KSSKSGPAWT VFQILQLAFP ERLSCKGDRF LVDGSDLLKF DFGVDAMGSI INEIVTSIFL EKGPKETLGF
0601: FDSLQPLLME SLFAEGFSLS LEDLSMSRAD MDVIHNLIIR EISPMVSRLR LSYRDELQLE NSIHKVKEVA ANFMLKSYSI RNLIDIKSNS AITKLVQQTG
0701: FLGLQLSDKK KFYTKTLVED MAIFCKRKYG RISSSGDFGI VKGCFFHGLD PYEEMAHSIA AREVIVRSSR GLAEPGTLFK NLMAVLRDIV ITNDGTVRNT
0801: CSNSVIQFKY GVDSERGHQG LFEAGEPVGV LAATAMSNPA YKAVLDSSPN SNSSWELMKE VLLCKVNFQN TTNDRRVILY LNECHCGKRF CQENAACTVR
0901: NKLNKVSLKD TAVEFLVEYR KQPTISEIFG IDSCLHGHIH LNKTLLQDWN ISMQDIHQKC EDVINSLGQK KKKKATDDFK RTSLSVSECC SFRDPCGSKG
1001: SDMPCLTFSY NATDPDLERT LDVLCNTVYP VLLEIVIKGD SRICSANIIW NSSDMTTWIR NRHASRRGEW VLDVTVEKSA VKQSGDAWRV VIDSCLSVLH
1101: LIDTKRSIPY SVKQVQELLG LSCAFEQAVQ RLSASVRMVS KGVLKEHIIL LANNMTCSGT MLGFNSGGYK ALTRSLNIKA PFTEATLIAP RKCFEKAAEK
1201: CHTDSLSTVV GSCSWGKRVD VGTGSQFELL WNQKETGLDD KEETDVYSFL QMVISTTNAD AFVSSPGFDV TEEEMAEWAE SPERDSALGE PKFEDSADFQ
1301: NLHDEGKPSG ANWEKSSSWD NGCSGGSEWG VSKSTGGEAN PESNWEKTTN VEKEDAWSSW NTRKDAQESS KSDSGGAWGI KTKDADADTT PNWETSPAPK
1401: DSIVPENNEP TSDVWGHKSV SDKSWDKKNW GTESAPAAWG STDAAVWGSS DKKNSETESD AAAWGSRDKN NSDVGSGAGV LGPWNKKSSE TESNGATWGS
1501: SDKTKSGAAA WNSWDKKNIE TDSEPAAWGS QGKKNSETES GPAAWGAWDK KKSETEPGPA GWGMGDKKNS ETELGPAAMG NWDKKKSDTK SGPAAWGSTD
1601: AAAWGSSDKN NSETESDAAA WGSRNKKTSE IESGAGAWGS WGQPSPTAED KDTNEDDRNP WVSLKETKSR EKDDKERSQW GNPAKKFPSS GGWSNGGGAD
1701: WKGNRNHTPR PPRSEDNLAP MFTATRQRLD SFTSEEQELL SDVEPVMRTL RKIMHPSAYP DGDPISDDDK TFVLEKILNF HPQKETKLGS GVDFITVDKH
1801: TIFSDSRCFF VVSTDGAKQD FSYRKSLNNY LMKKYPDRAE EFIDKYFTKP RPSGNRDRNN QDATPPGEEQ SQPPNQSIGN GGDDFQTQTQ SQSPSQTRAQ
1901: SPSQAQAQSP SQTQSQSQSQ SQSQSQSQSQ SQSQSQSQSQ SQSQSQSPSQ TQTQSPSQTQ AQAQSPSSQS PSQTQT
0101: CLKIKKAKGT SGGLADRLLG VCCEEASQIS IKDRASDGAS YLELKLPSRS RLQPGCWNFL ERYGYRYGSD YTRPLLAREV KEILRRIPEE SRKKLTAKGH
0201: IPQEGYILEY LPVPPNCLSV PEASDGFSTM SVDPSRIELK DVLKKVIAIK SSRSGETNFE SHKAEASEMF RVVDTYLQVR GTAKAARNID MRYGVSKISD
0301: SSSSKAWTEK MRTLFIRKGS GFSSRSVITG DAYRHVNEVG IPIEIAQRIT FEERVSVHNR GYLQKLVDDK LCLSYTQGST TYSLRDGSKG HTELKPGQVV
0401: HRRVMDGDVV FINRPPTTHK HSLQALRVYV HEDNTVKINP LMCSPLSADF DGDCVHLFYP QSLSAKAEVM ELFSVEKQLL SSHTGQLILQ MGSDSLLSLR
0501: VMLERVFLDK ATAQQLAMYG SLSLPPPALR KSSKSGPAWT VFQILQLAFP ERLSCKGDRF LVDGSDLLKF DFGVDAMGSI INEIVTSIFL EKGPKETLGF
0601: FDSLQPLLME SLFAEGFSLS LEDLSMSRAD MDVIHNLIIR EISPMVSRLR LSYRDELQLE NSIHKVKEVA ANFMLKSYSI RNLIDIKSNS AITKLVQQTG
0701: FLGLQLSDKK KFYTKTLVED MAIFCKRKYG RISSSGDFGI VKGCFFHGLD PYEEMAHSIA AREVIVRSSR GLAEPGTLFK NLMAVLRDIV ITNDGTVRNT
0801: CSNSVIQFKY GVDSERGHQG LFEAGEPVGV LAATAMSNPA YKAVLDSSPN SNSSWELMKE VLLCKVNFQN TTNDRRVILY LNECHCGKRF CQENAACTVR
0901: NKLNKVSLKD TAVEFLVEYR KQPTISEIFG IDSCLHGHIH LNKTLLQDWN ISMQDIHQKC EDVINSLGQK KKKKATDDFK RTSLSVSECC SFRDPCGSKG
1001: SDMPCLTFSY NATDPDLERT LDVLCNTVYP VLLEIVIKGD SRICSANIIW NSSDMTTWIR NRHASRRGEW VLDVTVEKSA VKQSGDAWRV VIDSCLSVLH
1101: LIDTKRSIPY SVKQVQELLG LSCAFEQAVQ RLSASVRMVS KGVLKEHIIL LANNMTCSGT MLGFNSGGYK ALTRSLNIKA PFTEATLIAP RKCFEKAAEK
1201: CHTDSLSTVV GSCSWGKRVD VGTGSQFELL WNQKETGLDD KEETDVYSFL QMVISTTNAD AFVSSPGFDV TEEEMAEWAE SPERDSALGE PKFEDSADFQ
1301: NLHDEGKPSG ANWEKSSSWD NGCSGGSEWG VSKSTGGEAN PESNWEKTTN VEKEDAWSSW NTRKDAQESS KSDSGGAWGI KTKDADADTT PNWETSPAPK
1401: DSIVPENNEP TSDVWGHKSV SDKSWDKKNW GTESAPAAWG STDAAVWGSS DKKNSETESD AAAWGSRDKN NSDVGSGAGV LGPWNKKSSE TESNGATWGS
1501: SDKTKSGAAA WNSWDKKNIE TDSEPAAWGS QGKKNSETES GPAAWGAWDK KKSETEPGPA GWGMGDKKNS ETELGPAAMG NWDKKKSDTK SGPAAWGSTD
1601: AAAWGSSDKN NSETESDAAA WGSRNKKTSE IESGAGAWGS WGQPSPTAED KDTNEDDRNP WVSLKETKSR EKDDKERSQW GNPAKKFPSS GGWSNGGGAD
1701: WKGNRNHTPR PPRSEDNLAP MFTATRQRLD SFTSEEQELL SDVEPVMRTL RKIMHPSAYP DGDPISDDDK TFVLEKILNF HPQKETKLGS GVDFITVDKH
1801: TIFSDSRCFF VVSTDGAKQD FSYRKSLNNY LMKKYPDRAE EFIDKYFTKP RPSGNRDRNN QDATPPGEEQ SQPPNQSIGN GGDDFQTQTQ SQSPSQTRAQ
1901: SPSQAQAQSP SQTQSQSQSQ SQSQSQSQSQ SQSQSQSQSQ SQSQSQSPSQ TQTQSPSQTQ AQAQSPSSQS PSQTQT
Arabidopsis Description
NRPE1DNA-directed RNA polymerase V subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5D869]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.