Factsheet for TraesCS3D01G191600.5

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G324800.1
TraesCS1B01G337800.2
TraesCS1D01G325500.1
TraesCS6A01G123800.1
TraesCS6B01G094400.1
TraesCS6B01G151900.1
TraesCS6D01G113900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27040.1	TraesCS6A01G123800.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6B01G094400.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6B01G151900.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6D01G113900.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS1A01G324800.1	AT5G04290.1	19410546
AT2G27040.1	TraesCS1B01G337800.2	AT5G04290.1	19410546
AT2G27040.1	TraesCS1D01G325500.1	AT5G04290.1	19410546

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G188400.1	Wheat	nucleus	90.92	99.45
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	92.61	98.31
HORVU3Hr1G038830.1	Barley	nucleus	88.42	96.1
Os01t0275600-01	Rice	nucleus	77.94	86.39
Zm00001d040429_P012	Maize	nucleus	75.25	83.68
Zm00001d008249_P012	Maize	nucleus	74.45	82.89
OQU86696	Sorghum	nucleus	74.45	82.89
TraesCS1D01G453600.1	Wheat	nucleus	68.86	74.84
PGSC0003DMT400070806	Potato	nucleus	21.66	74.32
GSMUA_Achr9P05150_001	Banana	nucleus	65.57	71.8
VIT_06s0009g01200.t01	Wine grape	nucleus	65.07	71.41
KRH14678	Soybean	nucleus	63.37	70.09
Solyc01g008960.2.1	Tomato	nucleus	63.57	70.08
PGSC0003DMT400058471	Potato	nucleus	63.37	69.86
KRH73469	Soybean	nucleus	62.87	69.54
PGSC0003DMT400069459	Potato	nucleus	62.28	68.35
Solyc06g073540.2.1	Tomato	nucleus	62.28	68.35
TraesCS7D01G520400.1	Wheat	nucleus	61.78	68.1
CDY72062	Canola	plastid	20.16	68.01
Solyc01g096750.1.1	Tomato	nucleus	59.48	67.65
VIT_08s0040g00070.t01	Wine grape	nucleus	61.38	66.99
KRG89867	Soybean	nucleus	62.18	65.79
TraesCS7D01G458800.1	Wheat	nucleus	30.14	64.81
CDY48192	Canola	nucleus	59.38	64.53
CDY56413	Canola	nucleus	59.38	64.46
CDY04475	Canola	nucleus	59.38	64.46
Bra020152.1-P	Field mustard	nucleus	58.28	64.46
Bra034318.1-P	Field mustard	nucleus	59.28	64.43
CDX77061	Canola	nucleus	59.28	64.43
AT5G21150.1	Thale cress	nucleus	57.58	64.4
CDY09103	Canola	nucleus	58.18	64.35
AT2G27040.1	Thale cress	nucleus	59.28	64.29
Solyc06g073530.1.1	Tomato	nucleus	57.88	64.16
CDX92417	Canola	nucleus	40.62	63.2
VIT_13s0175g00140.t01	Wine grape	nucleus	55.19	62.49
Bra002361.1-P	Field mustard	nucleus	56.59	62.24
CDX92405	Canola	nucleus	55.99	61.31
CDX92406	Canola	nucleus	54.39	60.29
CDY16587	Canola	nucleus	52.69	59.86
AT5G21030.2	Thale cress	cytosol	51.0	59.84
CDY59516	Canola	nucleus	54.09	59.82
TraesCS5D01G169500.1	Wheat	cytosol	52.4	59.52
PGSC0003DMT400039204	Potato	cytosol	8.78	58.67
Bra002360.1-P	Field mustard	nucleus	53.99	58.17
CDY16595	Canola	nucleus	49.8	54.24
KRH56276	Soybean	cytosol	44.61	53.79
TraesCS7D01G458900.1	Wheat	mitochondrion	9.58	52.75
Solyc03g111760.2.1	Tomato	mitochondrion	42.81	46.83
CDY62055	Canola	nucleus	24.85	43.23
TraesCS4D01G024300.1	Wheat	cytosol	20.16	36.73
TraesCS7D01G552900.1	Wheat	mitochondrion	16.67	36.7
TraesCS7D01G553200.1	Wheat	nucleus, plastid	17.27	36.12
TraesCS4D01G024100.1	Wheat	plastid	30.74	35.94
TraesCS3D01G118600.1	Wheat	cytosol, mitochondrion, nucleus	29.64	35.36
TraesCS7D01G351700.1	Wheat	cytosol	32.53	34.24
TraesCS7D01G061600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	17.96	34.16
TraesCS5D01G454600.1	Wheat	cytosol	24.55	33.2
TraesCS6D01G166300.1	Wheat	plastid	30.34	31.97
TraesCS6D01G403900.1	Wheat	plastid	33.03	31.37
TraesCS1D01G151300.3	Wheat	plastid	26.55	31.33
Bra002349.1-P	Field mustard	nucleus	51.9	30.57
TraesCS7D01G553000.1	Wheat	cytosol	31.44	30.55
TraesCS2D01G400200.1	Wheat	nucleus	32.93	30.03
TraesCS5D01G454200.1	Wheat	cytosol, nucleus, plastid	31.54	30.01
TraesCS6D01G235900.1	Wheat	endoplasmic reticulum	32.83	29.56
TraesCS2D01G176500.1	Wheat	golgi, unclear	30.04	29.03
TraesCS7D01G036100.3	Wheat	endoplasmic reticulum, golgi	32.34	26.78
TraesCS2D01G417000.1	Wheat	nucleus	25.25	24.14
TraesCS2D01G412100.1	Wheat	plastid	25.35	22.74
TraesCS2D01G416500.1	Wheat	nucleus	21.36	20.25
TraesCS5D01G192700.2	Wheat	nucleus	18.56	19.72

Protein Annotations

MapMan:12.5.1.13	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	InterPro:IPR003100
InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170	PFAM:PF02171
PFAM:PF08699	PFAM:PF16486	PFAM:PF16488	PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891
PANTHER:PTHR22891:SF56	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00950	SMART:SM01163
SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS3D01G191600	EnsemblPlants:TraesCS3D01G191600.5	TIGR:cd02846	TIGR:cd04657
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:181110655..181118906

Molecular Weight (calculated)

111116.0 Da

IEP (calculated)

9.037

GRAVY (calculated)

-0.390

Length

1002 amino acids

Sequence
(BLAST)

0001: MASVRPFLPS CPSLLCYKKR GPVPGLGHCP GECCSRRGEG RGRDEKGNGK ESQALSCGGQ RQGFLPCALA DQFSGSAPRD HCWFAEMESH SDDLPPPPPL
0101: PPNAEPIKAE SADDLPPPPP LPPIKPEEAK KISKPKRALI ARPGFGKRGN PIQLVTNHFK VSLKTTDEFF HHYYVNLKYE DDRPVDGKGV GRKVIDKLAQ
0201: TYPSELAHKD FAYDGEKSLF TIGALPQINN EFVVVLEDVS SGKTPANGSP GNDSPDKKRV KRPYQTKTFK VELSFAARIP MSAIAMALKG QESEHTQEAI
0301: RVIDIILRQH SSKQGCLLVR QSFFHNNPSN FVDLGGGVMG CRGFHSSFRA TQSGLSLNID VSTTMIVKPG PVVDFLLANQ KVDHPNKIDW AKAKRALKNL
0401: RIKTSPANTE YKIVGLSERN CYEQMFSLKQ RNGGNGDPEA IEISVYDYFV KNRGIELRYS GDFPCINVGK PRRPTYFPIE LCQLVPLQRY TKSLSTLQRS
0501: SLVEKSRQKP QERMSVLSDV LKRSSYDTEP MLKACGISIA QGFTQVSGRV LQAPKLKAGN GEDIFTRNGR WNFNNKRLAR ACVVDRWAVV NFSARCNTMN
0601: LVNDLIKCGG MKGITVEKPH IVIEENGSMR RAPAPKRVED MFEQVKSKLP GAPKFLLCIL AERKNSDVYG PWKRKCLADF GIVTQCVAPT RVNDQYLTNV
0701: LLKINAKLGG MNSLLQIEMS PSIPLVSKVP TLILGMDVSH GSPGQSDIPS IAAVVGSREW PLVSKYRASV RSQSPKLEMI DSLFKPQGTD DDGLVRECLI
0801: DFYTSSGKRK PDQIIIFRDG VSESQFNQVL NIELDQIIEA CKFLDENWNP KFTLIVAQKN HHTKFFIPGS PDNVPPGTVV DNAVCHPRNY DFYMCAHAGM
0901: IGTTRPTHYH ILHDEIHFAA DDLQDLVHSL SYVYQRSTTA ISVVSPICYA HLAAAQVAQF IKFDEMSETS SSQGGGHTSA GSAPVQELPR LHEKVRSSMF
1001: FC

Best Arabidopsis Sequence Match ( AT2G27040.2 )
(BLAST)

001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC

Arabidopsis Description

AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.