Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G27040.1 | CDY07630 | AT2G40030.1 | 19410546 |
| AT2G27040.1 | CDY60335 | AT2G40030.1 | 19410546 |
| AT2G27040.1 | CDX70245 | AT5G04290.1 | 19410546 |
| AT2G27040.1 | CDY41384 | AT5G04290.1 | 19410546 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034318.1-P | Field mustard | nucleus | 59.2 | 36.98 |
| CDY48192 | Canola | nucleus | 59.2 | 36.98 |
| CDX77061 | Canola | nucleus | 59.2 | 36.98 |
| CDY56413 | Canola | nucleus | 58.85 | 36.73 |
| CDY04475 | Canola | nucleus | 58.85 | 36.73 |
| TraesCS7D01G458800.1 | Wheat | nucleus | 29.51 | 36.48 |
| CDY72062 | Canola | plastid | 18.06 | 35.02 |
| AT2G27040.1 | Thale cress | nucleus | 54.34 | 33.87 |
| CDY68123 | Canola | cytosol, endoplasmic reticulum, nucleus | 13.02 | 31.78 |
| Solyc01g008960.2.1 | Tomato | nucleus | 48.26 | 30.58 |
| VIT_06s0009g01200.t01 | Wine grape | nucleus | 48.26 | 30.45 |
| PGSC0003DMT400058471 | Potato | nucleus | 47.74 | 30.25 |
| PGSC0003DMT400069459 | Potato | nucleus | 47.92 | 30.23 |
| Solyc06g073540.2.1 | Tomato | nucleus | 47.57 | 30.01 |
| Os01t0275200-00 | Rice | golgi, peroxisome, plastid | 24.31 | 29.98 |
| CDX92417 | Canola | nucleus | 32.99 | 29.5 |
| KRH14678 | Soybean | nucleus | 45.66 | 29.03 |
| Os04t0151800-02 | Rice | nucleus | 45.83 | 28.98 |
| KRH73469 | Soybean | nucleus | 45.49 | 28.92 |
| OQU86696 | Sorghum | nucleus | 44.62 | 28.56 |
| Zm00001d040429_P012 | Maize | nucleus | 44.62 | 28.52 |
| Os01t0275600-01 | Rice | nucleus | 44.44 | 28.32 |
| KRG89867 | Soybean | nucleus | 46.35 | 28.19 |
| Zm00001d008249_P012 | Maize | nucleus | 43.92 | 28.11 |
| EES18816 | Sorghum | nucleus | 42.88 | 27.17 |
| Solyc06g073530.1.1 | Tomato | nucleus | 42.53 | 27.1 |
| TraesCS3A01G188400.1 | Wheat | nucleus | 43.06 | 27.07 |
| CDY09103 | Canola | nucleus | 42.36 | 26.93 |
| HORVU3Hr1G038830.1 | Barley | nucleus | 42.88 | 26.79 |
| GSMUA_Achr9P05150_001 | Banana | nucleus | 42.36 | 26.67 |
| TraesCS1A01G445500.1 | Wheat | golgi, unclear | 42.53 | 26.49 |
| TraesCS1D01G453600.1 | Wheat | nucleus | 42.36 | 26.46 |
| TraesCS1B01G480100.1 | Wheat | nucleus | 42.53 | 26.43 |
| Zm00001d039214_P025 | Maize | nucleus | 42.36 | 26.41 |
| TraesCS3B01G217300.2 | Wheat | golgi, nucleus, unclear | 43.23 | 26.38 |
| TraesCS3D01G191600.5 | Wheat | nucleus | 43.23 | 24.85 |
| CDX92405 | Canola | nucleus | 39.41 | 24.81 |
| TraesCS7A01G533100.1 | Wheat | cytosol | 38.72 | 24.75 |
| TraesCS7B01G450200.2 | Wheat | nucleus | 39.76 | 24.73 |
| CDY59516 | Canola | nucleus | 38.37 | 24.39 |
| CDY16595 | Canola | nucleus | 38.89 | 24.35 |
| CDX92406 | Canola | nucleus | 38.19 | 24.34 |
| TraesCS7B01G450300.1 | Wheat | nucleus | 38.54 | 24.16 |
| CDY16587 | Canola | nucleus | 36.98 | 24.15 |
| TraesCS7B01G437900.1 | Wheat | cytosol | 33.68 | 24.04 |
| TraesCS7A01G521000.1 | Wheat | nucleus | 33.68 | 23.92 |
| TraesCS7D01G520400.1 | Wheat | nucleus | 37.67 | 23.87 |
| TraesCS7B01G437700.1 | Wheat | nucleus | 35.24 | 23.09 |
| CDX84712 | Canola | nucleus | 33.68 | 22.38 |
| CDX79495 | Canola | nucleus | 33.68 | 22.38 |
| TraesCS7B01G373400.1 | Wheat | nucleus | 30.21 | 22.14 |
| EES00570 | Sorghum | nucleus | 33.85 | 21.71 |
| HORVU7Hr1G107770.1 | Barley | nucleus | 22.4 | 21.57 |
| TraesCS7D01G458900.1 | Wheat | mitochondrion | 4.51 | 14.29 |
| CDY04311 | Canola | cytosol, nucleus, plastid | 22.57 | 13.27 |
| CDX71410 | Canola | nucleus | 21.7 | 13.13 |
| CDY04517 | Canola | plastid | 21.7 | 13.06 |
| CDY22332 | Canola | plastid | 22.05 | 13.03 |
| CDX94724 | Canola | plastid | 22.05 | 12.95 |
| CDY68174 | Canola | nucleus | 22.74 | 12.45 |
| CDY41831 | Canola | nucleus | 22.57 | 12.45 |
| CDY23683 | Canola | cytosol, nucleus, plastid | 22.57 | 11.97 |
| CDY51501 | Canola | nucleus | 16.32 | 10.46 |
| CDY07349 | Canola | nucleus | 17.53 | 10.26 |
| CDY28550 | Canola | cytosol, plastid | 16.67 | 9.84 |
| CDY70429 | Canola | plastid | 14.76 | 9.58 |
| CDY25885 | Canola | cytosol | 15.62 | 8.91 |
| CDY55876 | Canola | cytosol | 15.8 | 8.79 |
| CDY02373 | Canola | nucleus | 15.45 | 8.7 |
Protein Annotations
| Gene3D:3.30.420.10 | Gene3D:3.40.50.2300 | MapMan:35.1 | GO:A0A078JCQ0 | UniProt:A0A078JCQ0 | InterPro:ArgoL2 |
| InterPro:Argonaute_Mid_dom | EnsemblPlants:CDY62055 | ProteinID:CDY62055 | ProteinID:CDY62055.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00035893001 | InterPro:IPR003165 | InterPro:IPR036397 | PFAM:PF02171 | PFAM:PF16487 |
| PFAM:PF16488 | PFscan:PS50822 | PANTHER:PTHR22891 | PANTHER:PTHR22891:SF20 | InterPro:Papain_like_cys_pep_sf | InterPro:Piwi |
| InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | SMART:SM00950 | SUPFAM:SSF53098 | SUPFAM:SSF54001 | UniParc:UPI0004EE27C8 |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g56440DBnaC04g56440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JCQ0]
Coordinates
chrLK034088:-:25790..28551
Molecular Weight (calculated)
63993.1 Da
IEP (calculated)
9.541
GRAVY (calculated)
-0.328
Length
576 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDVFSHRDS RLMDEVLNQK PHDICCAIAL TRQATSILRS LGVIQDDQRL SIQYLHQLSW KGGIGSLEQA AVFFRQGGAR RFVFETKIHR RGDYPSLKVF
101: EQKLDSCLRQ NPIATAVHEF PSLSAPIGDG RIKKQHVMLL CGSTSDHWLF QDSLGKRRGE AGYVKFMKTK ETITEFAEIR FLYEEEQPDG QGKRKRQHSG
201: RGGRGGGRGG GRGGGRGGGR RAKHCTLIPP FREMMNVLSK ALKVSNYDTE PLLRSCGISI SSNFTQVEGR VLLAPKLKMG RGDELFPRNG RWNFNNKQFV
301: EPTKIDKWEV ANFSASCNVR QLVDGLIRIG GSKGVEIAAP FDVFEEGHLF PCDPPLIRVE KMFEEIQSKL PGAPQFLLCL IPERKNCNIY YSMLSVERTP
401: AFTTVISKVQ TIILGMDVSH GSPGQSDVPS IAAVVSSRQG PLVSKNKASV RTQPSKAEMI ESLVKKNGTE DDGIIKFHFL DEIHFSPDEL QELVHSLSYV
501: YQRSITAISV VAPICYTHLA AAQLGTFMKF EDQSETSSSH GGVTAPGPVS VAQLPKLKRQ RRQLHVLLLG VEEASL
101: EQKLDSCLRQ NPIATAVHEF PSLSAPIGDG RIKKQHVMLL CGSTSDHWLF QDSLGKRRGE AGYVKFMKTK ETITEFAEIR FLYEEEQPDG QGKRKRQHSG
201: RGGRGGGRGG GRGGGRGGGR RAKHCTLIPP FREMMNVLSK ALKVSNYDTE PLLRSCGISI SSNFTQVEGR VLLAPKLKMG RGDELFPRNG RWNFNNKQFV
301: EPTKIDKWEV ANFSASCNVR QLVDGLIRIG GSKGVEIAAP FDVFEEGHLF PCDPPLIRVE KMFEEIQSKL PGAPQFLLCL IPERKNCNIY YSMLSVERTP
401: AFTTVISKVQ TIILGMDVSH GSPGQSDVPS IAAVVSSRQG PLVSKNKASV RTQPSKAEMI ESLVKKNGTE DDGIIKFHFL DEIHFSPDEL QELVHSLSYV
501: YQRSITAISV VAPICYTHLA AAQLGTFMKF EDQSETSSSH GGVTAPGPVS VAQLPKLKRQ RRQLHVLLLG VEEASL
001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC
Arabidopsis Description
AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.