Factsheet for TraesCS1A01G445500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, unclear
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G324800.1
TraesCS1B01G337800.2
TraesCS1D01G325500.1
TraesCS6A01G123800.1
TraesCS6B01G094400.1
TraesCS6B01G151900.1
TraesCS6D01G113900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27040.1	TraesCS6A01G123800.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6B01G094400.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6B01G151900.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6D01G113900.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS1A01G324800.1	AT5G04290.1	19410546
AT2G27040.1	TraesCS1B01G337800.2	AT5G04290.1	19410546
AT2G27040.1	TraesCS1D01G325500.1	AT5G04290.1	19410546

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G453600.1	Wheat	nucleus	98.38	98.7
TraesCS1B01G480100.1	Wheat	nucleus	98.49	98.27
Os04t0151800-02	Rice	nucleus	81.73	82.99
TraesCS7A01G533100.1	Wheat	cytosol	77.62	79.69
EES18816	Sorghum	nucleus	77.51	78.88
Zm00001d039214_P025	Maize	nucleus	76.43	76.52
TraesCS3A01G188400.1	Wheat	nucleus	74.81	75.55
PGSC0003DMT400070806	Potato	nucleus	22.49	71.23
GSMUA_Achr9P05150_001	Banana	nucleus	68.32	69.07
PGSC0003DMT400069459	Potato	nucleus	67.24	68.13
VIT_06s0009g01200.t01	Wine grape	nucleus	67.03	67.91
Solyc06g073540.2.1	Tomato	nucleus	66.81	67.69
Solyc01g008960.2.1	Tomato	nucleus	66.49	67.66
PGSC0003DMT400058471	Potato	nucleus	66.05	67.22
KRH14678	Soybean	nucleus	64.86	66.23
KRH73469	Soybean	nucleus	64.65	66.0
CDY72062	Canola	plastid	21.08	65.66
VIT_08s0040g00070.t01	Wine grape	nucleus	64.11	64.6
Solyc01g096750.1.1	Tomato	nucleus	61.51	64.59
Solyc06g073530.1.1	Tomato	nucleus	62.27	63.72
KRG89867	Soybean	nucleus	65.19	63.67
CDY48192	Canola	nucleus	63.35	63.56
Bra034318.1-P	Field mustard	nucleus	63.24	63.45
CDY56413	Canola	nucleus	63.14	63.27
CDX77061	Canola	nucleus	63.03	63.23
AT2G27040.1	Thale cress	nucleus	63.03	63.1
CDY04475	Canola	nucleus	62.92	63.06
AT5G21150.1	Thale cress	nucleus	60.76	62.72
PGSC0003DMT400039204	Potato	cytosol	9.95	61.33
Bra020152.1-P	Field mustard	nucleus	59.78	61.04
CDY09103	Canola	nucleus	59.78	61.04
Bra002361.1-P	Field mustard	nucleus	58.92	59.82
CDX92417	Canola	nucleus	41.41	59.47
CDX92405	Canola	nucleus	58.59	59.23
CDX92406	Canola	nucleus	57.73	59.07
TraesCS7A01G521000.1	Wheat	nucleus	51.78	59.06
CDY59516	Canola	nucleus	57.41	58.61
VIT_13s0175g00140.t01	Wine grape	nucleus	56.0	58.53
CDY16587	Canola	nucleus	55.57	58.28
AT5G21030.2	Thale cress	cytosol	53.19	57.61
TraesCS5A01G165900.1	Wheat	cytosol	54.92	57.53
Bra002360.1-P	Field mustard	nucleus	57.3	56.99
CDY16595	Canola	nucleus	52.22	52.5
KRH56276	Soybean	cytosol	46.81	52.11
Solyc03g111760.2.1	Tomato	mitochondrion	46.81	47.27
CDY62055	Canola	nucleus	26.49	42.53
TraesCS2A01G258200.1	Wheat	cytosol	25.73	35.74
TraesCS5A01G446000.1	Wheat	cytosol	32.32	35.22
TraesCS4A01G288000.1	Wheat	cytosol	26.92	34.73
TraesCS4A01G288300.1	Wheat	plastid	32.11	34.66
TraesCS7A01G371200.2	Wheat	cytosol	34.92	33.58
TraesCS6A01G178100.2	Wheat	plastid	33.19	32.38
TraesCS2A01G258100.1	Wheat	mitochondrion	29.95	31.62
TraesCS7A01G067500.2	Wheat	cytosol	28.76	31.15
TraesCS7A01G557400.1	Wheat	plastid	34.7	31.1
TraesCS6A01G254600.2	Wheat	plastid	35.14	29.95
TraesCS2A01G403100.4	Wheat	nucleus	35.68	29.46
Bra002349.1-P	Field mustard	nucleus	53.95	29.34
TraesCS2A01G168900.1	Wheat	cytosol	32.54	29.03
TraesCS3A01G116800.1	Wheat	nucleus	32.54	28.48
TraesCS7A01G040700.5	Wheat	endoplasmic reticulum, golgi, vacuole	35.24	26.94
TraesCS2A01G419800.2	Wheat	nucleus	20.0	26.24
TraesCS2A01G414800.1	Wheat	nucleus	25.62	25.37
TraesCS2A01G419900.1	Wheat	nucleus	27.68	24.4
TraesCS2A01G419500.1	Wheat	nucleus	23.57	20.47

Protein Annotations

MapMan:12.5.1.13	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	InterPro:IPR003100
InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170	PFAM:PF02171
PFAM:PF08699	PFAM:PF16486	PFAM:PF16488	PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891
PANTHER:PTHR22891:SF56	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00950	SMART:SM01163
SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS1A01G445500	EnsemblPlants:TraesCS1A01G445500.1	TIGR:cd02846	TIGR:cd04657
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:+:593278897..593287233

Molecular Weight (calculated)

102461.0 Da

IEP (calculated)

9.257

GRAVY (calculated)

-0.397

Length

925 amino acids

Sequence
(BLAST)

001: MDPHDGEPAA DELPPPPPLP PNVVPIIAED AAAAAAGESE PPPPPPPPSK PAKPRKHIMA RPPNGLGKKG QPIQLLANHY KVSVKPSEEF FNHYYVNLKY
101: EDDTPVDSKG IGRKVLDKLQ HTYHSELANK DFAYDGEKSL FTIGALPQIN NEFIVVLEDI GSGKTAAGSP GGNNGSPGGG DQKRVRRPYQ AKTFKVELNF
201: AATIPMAAIG HAIRGQESEH SLEALRVLDI ILRQHSAKQG CLLVRQSFFH NNPSNFVDLG GGVMGCRGFH SSFRGAQSGL SLNIDVSTTM IVKPGPVIDF
301: LLANQKVDHP DKIDWQKAKR ALKNLRIKTT PANSEFKIVG LSERNCNEQM FPLRRRNGDS TETVEITVYD YFVKNRGIEL RYSGNLPCIN AGRPKRPTYF
401: PVELCTLVPL QRYTKALSTM QRTSLVEKSR QKPHERMSTL NDALKRSNYD ADPMLKACGI SIAQNFTQIE GRVLPAPKLK AGNGEEFFTR NGRWNIARKK
501: LIRTSSVKRW SVVNFSARCD LRGLVQDLKR VATGMGLEYE DPHTVIEESP SLRRAPVARR VEEMFAQIKA KLPGAPLFLL CLLPERKNCE VYGPWKKKCL
601: ADFGIVTQCL APQRVNDQYL SNLLLKINAK LGGLNTLLQI EAARAIPIVG KVPTIILGMD VSHGQPGQSD RPSIAAVVSS REWPLISKYR ATVHTQSPKQ
701: EMMASLFKPR GTEDDGLIRE SLIDFYTSSG KRKPDQVIIF RDGVSESQFT QVINIELEQI IEACKCLDDK WEPKFTVIVA QKNHHTRFFQ ANSPENVPPG
801: TVVDKQVCHP KNFDFYMCAH AGMIGTSRPT HYHVLHDEIG FSGDELQEFV HSLSYVYQRS TTAISVAAPI AYAHLAAAQV GTFMKFDDMS DTSSSQGGGH
901: TSAGSAPVPE LPRLHEKVRS SMFFC

Best Arabidopsis Sequence Match ( AT2G27040.1 )
(BLAST)

001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC

Arabidopsis Description

AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.