Factsheet for Solyc06g073540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g096390.2.1
Solyc11g008150.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27040.1	Solyc01g096390.2.1	AT2G40030.1	19410546
AT2G27040.1	Solyc11g008150.1.1	AT5G04290.1	19410546

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069459	Potato	nucleus	98.69	98.69
Solyc01g008960.2.1	Tomato	nucleus	86.42	86.8
Solyc06g073530.1.1	Tomato	nucleus	85.54	86.39
VIT_06s0009g01200.t01	Wine grape	nucleus	82.37	82.37
KRH73469	Soybean	nucleus	77.22	77.81
KRH14678	Soybean	nucleus	77.0	77.59
KRG89867	Soybean	nucleus	77.66	74.87
CDY48192	Canola	nucleus	73.6	72.89
Bra034318.1-P	Field mustard	nucleus	73.49	72.78
CDX77061	Canola	nucleus	73.38	72.67
CDY04475	Canola	nucleus	73.06	72.26
CDY56413	Canola	nucleus	72.95	72.16
AT2G27040.1	Thale cress	nucleus	72.84	71.97
Os04t0151800-02	Rice	nucleus	71.41	71.57
Solyc01g096750.1.1	Tomato	nucleus	69.0	71.51
Os01t0275600-01	Rice	nucleus	70.43	71.13
GSMUA_Achr9P05150_001	Banana	nucleus	70.87	70.71
Zm00001d040429_P012	Maize	nucleus	69.44	70.37
Zm00001d008249_P012	Maize	nucleus	69.33	70.33
OQU86696	Sorghum	nucleus	69.11	70.11
EES18816	Sorghum	nucleus	68.35	68.65
TraesCS3A01G188400.1	Wheat	nucleus	68.35	68.12
HORVU3Hr1G038830.1	Barley	nucleus	67.8	67.14
Zm00001d039214_P025	Maize	nucleus	67.91	67.1
TraesCS1D01G453600.1	Wheat	nucleus	67.47	66.81
TraesCS1A01G445500.1	Wheat	golgi, unclear	67.69	66.81
TraesCS1B01G480100.1	Wheat	nucleus	67.69	66.67
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	68.24	66.0
TraesCS7A01G533100.1	Wheat	cytosol	63.86	64.71
TraesCS7D01G520400.1	Wheat	nucleus	62.54	62.82
TraesCS7D01G458800.1	Wheat	nucleus	31.87	62.45
TraesCS3D01G191600.5	Wheat	nucleus	68.35	62.28
TraesCS7B01G450300.1	Wheat	nucleus	62.54	62.13
TraesCS7B01G450200.2	Wheat	nucleus	61.34	60.48
TraesCS7A01G521000.1	Wheat	nucleus	52.25	58.82
Solyc07g049500.2.1	Tomato	nucleus	58.16	58.8
TraesCS7B01G437900.1	Wheat	cytosol	51.04	57.74
EES00570	Sorghum	nucleus	56.3	57.24
TraesCS7B01G437700.1	Wheat	nucleus	54.22	56.31
Os01t0275200-00	Rice	golgi, peroxisome, plastid	27.6	53.96
TraesCS7B01G373400.1	Wheat	nucleus	45.67	53.05
TraesCS7D01G458900.1	Wheat	mitochondrion	9.97	50.0
Solyc03g111760.2.1	Tomato	mitochondrion	48.41	48.25
HORVU7Hr1G107770.1	Barley	nucleus	31.33	47.83
CDY62055	Canola	nucleus	30.01	47.57
Solyc09g082830.2.1	Tomato	nucleus	34.83	32.38
Solyc12g006790.1.1	Tomato	nucleus	32.75	32.05
Solyc03g098280.2.1	Tomato	nucleus	34.17	31.84
Solyc06g072300.2.1	Tomato	nucleus	35.6	30.83
Solyc06g074730.2.1	Tomato	nucleus	32.75	29.57
Solyc01g010970.2.1	Tomato	nucleus	29.68	27.1
Solyc02g069270.2.1	Tomato	cytosol	27.6	25.79
Solyc02g069260.2.1	Tomato	nucleus	29.24	25.62
Solyc02g069280.2.1	Tomato	nucleus	27.16	24.82

Protein Annotations

MapMan:12.5.1.13	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0031047	InterPro:IPR003100
InterPro:IPR003165	InterPro:IPR036397	UniProt:K4C973	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170
PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487	PFAM:PF16488	PFscan:PS50821
PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF42	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:Solyc06g073540.2	EnsemblPlants:Solyc06g073540.2.1
UniParc:UPI0002765F8F	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:45335577..45341404

Molecular Weight (calculated)

101886.0 Da

IEP (calculated)

9.169

GRAVY (calculated)

-0.404

Length

913 amino acids

Sequence
(BLAST)

001: MAEEENGGST EALPPPPPVP LNFSPAQAEP EPVKKKVLRV PMARRGLGSK GQKIPILTNH FKVNVSNVDG HFFHYSVALF YEDGRPVEGK GIGRKVLDRV
101: HETYDTELAG KDFAYDGEKS LFTIGSLPRN KLEFTVVLDD ITSNRNNGTN GNSSPGRHGS PPNETDRKRL RRPYQSKTYK VEISFAAKIP MQAIANALRG
201: QESENSQEAL RVLDIILRQH AAKQGCLLVR QSFFHNDPKN FADVGGGVLG CRGFHSSFRT TQSGLSLNID VSTTMIIQPG PVVDFLIANQ NAKDPFSLDW
301: AKAKRVLKNL RVKTAPANQE FKITGLSEKP CREQMFTLKQ KSKDEDGEVQ TSEVTVYDYF VNHRNIDLRY SADLPCLNVG KPKRPTYFPI ELCTLVSLQR
401: YTKALSTFQR ASLVEKSRQK PQERMQILSN ALKINNYDAE PLLRSSGVSI SSNFTQVDGR VLPAPKLKAG NGDDLFTRNG RWNFNNKRFF EPAKVERWAV
501: VNFSARCDVR GLVRDLTRLG ETKGISVEAP FEVFEESPQL RRAPPVVRVD KMFEEIQSKL PGAPKFLLCL LPERKNCDIY GPWKRKNLAD HGIVTQCLAP
601: GRVNDQYLTN LLLKINAKLG GLNSMLAAEI SPSIPMVSKV PTMILGMDVS HGSPGQSDVP SIAAVVSSRQ WPSISRYRAS VRTQSPKVEM IDNIFKKVSD
701: TDDDGIMREL LLDFYVSSGK RKPEHIIVFR DGVSESQFNQ VLNIELDQLI EACNFLDEKW SPKFVIIVAQ KNHHTKFFQS GSPDNVPPGT IIDNKVCHPR
801: NNDFYLCAHA GMIGTTRPTH YHVLLDEVGF SPDELQELVH NLSYVYQRST TAISIVAPIS YAHLAATQVG QWMKFEDASE TSSSHGGLTN AGPVTVPQLP
901: RLQENVASSM FFC

Best Arabidopsis Sequence Match ( AT2G27040.2 )
(BLAST)

001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC

Arabidopsis Description

AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.