Factsheet for Solyc06g072300.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 25464976
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069313	Potato	cytosol	98.96	98.96
Solyc03g098280.2.1	Tomato	nucleus	81.4	87.55
VIT_19s0014g01840.t01	Wine grape	cytosol, nucleus, plastid	63.85	86.62
Zm00001d044183_P001	Maize	cytosol	14.8	86.19
Zm00001d037833_P001	Maize	mitochondrion	20.02	85.08
KRH38925	Soybean	endoplasmic reticulum	83.97	83.65
KRH09472	Soybean	nucleus	83.11	83.19
VIT_17s0053g00680.t01	Wine grape	nucleus	84.82	82.4
CDY04311	Canola	cytosol, nucleus, plastid	74.76	80.41
GSMUA_Achr3P13970_001	Banana	nucleus	80.55	80.09
AT1G48410.2	Thale cress	nucleus	78.94	79.24
CDY41831	Canola	nucleus	78.08	78.83
CDY68174	Canola	nucleus	78.56	78.71
TraesCS7D01G552900.1	Wheat	mitochondrion	33.87	78.46
OQU82149	Sorghum	nucleus	79.6	77.9
GSMUA_Achr1P17950_001	Banana	nucleus	77.13	77.06
Bra014136.1-P	Field mustard	nucleus	78.75	76.92
TraesCS7D01G553200.1	Wheat	nucleus, plastid	34.91	76.83
Os04t0566500-04	Rice	nucleus	80.08	76.66
GSMUA_AchrUn_...	Banana	cytosol	14.23	76.53
GSMUA_AchrUn_...	Banana	mitochondrion	76.76	76.03
GSMUA_Achr1P07120_001	Banana	cytosol	75.52	75.31
TraesCS2D01G400200.1	Wheat	nucleus	78.46	75.25
TraesCSU01G081900.1	Wheat	plastid	69.64	75.05
TraesCS2B01G421000.2	Wheat	nucleus	78.37	74.95
GSMUA_Achr3P27070_001	Banana	nucleus	76.38	74.81
Os02t0672200-01	Rice	cytosol	76.76	74.77
Bra032254.1-P	Field mustard	nucleus	78.37	74.35
CDY23683	Canola	cytosol, nucleus, plastid	76.47	74.22
Zm00001d002650_P003	Maize	nucleus	79.13	74.07
Os02t0831600-01	Rice	extracellular	70.97	73.99
Zm00001d026111_P014	Maize	nucleus	76.66	73.79
TraesCS2A01G403100.4	Wheat	nucleus	78.37	73.75
TraesCS6B01G466700.1	Wheat	nucleus	69.83	72.66
EES18841	Sorghum	nucleus	76.09	72.32
Os06t0729300-01	Rice	nucleus	70.87	71.97
Zm00001d011096_P059	Maize	nucleus	75.52	71.84
KXG20965	Sorghum	nucleus	71.35	71.76
TraesCS6A01G254600.2	Wheat	plastid	73.62	71.52
Solyc09g082830.2.1	Tomato	nucleus	66.51	71.38
TraesCS6B01G270900.1	Wheat	nucleus	73.24	71.15
Zm00001d025331_P002	Maize	cytosol	37.1	70.83
TraesCS6D01G403900.1	Wheat	plastid	70.59	70.52
GSMUA_Achr7P04100_001	Banana	extracellular	16.51	70.16
TraesCS6D01G235900.1	Wheat	endoplasmic reticulum	73.62	69.72
Zm00001d025073_P001	Maize	cytosol	25.62	69.59
TraesCSU01G065300.1	Wheat	nucleus	78.65	69.55
Zm00001d035747_P027	Maize	endoplasmic reticulum, plastid	75.62	69.36
TraesCS7D01G553000.1	Wheat	cytosol	67.84	69.35
TraesCS7A01G557400.1	Wheat	plastid	67.74	69.19
TraesCS7B01G482100.1	Wheat	nucleus	67.74	69.19
TraesCS7D01G036100.3	Wheat	endoplasmic reticulum, golgi	78.56	68.43
TraesCS7A01G040700.5	Wheat	endoplasmic reticulum, golgi, vacuole	78.18	68.1
Solyc12g006790.1.1	Tomato	nucleus	59.77	67.52
HORVU7Hr1G120600.3	Barley	cytosol, nucleus	67.46	66.82
HORVU7Hr1G007000.14	Barley	nucleus	75.71	65.57
Zm00001d014875_P001	Maize	nucleus	66.41	64.87
OQU86027	Sorghum	plastid	67.74	64.67
TraesCS2A01G258200.1	Wheat	cytosol	39.66	62.76
TraesCS3B01G027100.1	Wheat	cytosol	9.11	62.75
GSMUA_AchrUn_...	Banana	cytosol	16.98	58.88
TraesCS1D01G151300.3	Wheat	plastid	45.54	56.54
TraesCS5B01G116900.5	Wheat	cytosol, mitochondrion, nucleus, plastid	45.35	56.3
TraesCS2A01G258100.1	Wheat	mitochondrion	46.3	55.71
Os02t0169400-01	Rice	nucleus	44.97	54.11
Solyc06g074730.2.1	Tomato	nucleus	50.85	53.02
HORVU2Hr1G103840.1	Barley	cytosol	11.29	47.6
Solyc01g096750.1.1	Tomato	nucleus	30.55	36.55
Solyc01g008960.2.1	Tomato	nucleus	31.31	36.3
Solyc01g010970.2.1	Tomato	nucleus	34.16	36.0
Solyc07g049500.2.1	Tomato	nucleus	30.55	35.66
Solyc06g073540.2.1	Tomato	nucleus	30.83	35.6
Solyc06g073530.1.1	Tomato	nucleus	29.89	34.85
Solyc02g069270.2.1	Tomato	cytosol	29.6	31.93
Solyc02g069260.2.1	Tomato	nucleus	31.31	31.67
Solyc02g069280.2.1	Tomato	nucleus	28.37	29.93
Solyc03g111760.2.1	Tomato	mitochondrion	25.24	29.04

Protein Annotations

MapMan:16.10.3	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaut_Gly-rich	InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0031047	InterPro:IPR003100
InterPro:IPR003165	InterPro:IPR036397	EMBL:JX467704	EMBL:JX945381	UniProt:K4C8V0	InterPro:PAZ_dom
InterPro:PAZ_dom_sf	PFAM:PF02170	PFAM:PF02171	PFAM:PF08699	PFAM:PF12764	PFAM:PF16486
PFAM:PF16487	PFAM:PF16488	PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF102
InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00949	SMART:SM00950	SMART:SM01163
SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:Solyc06g072300.2	EnsemblPlants:Solyc06g072300.2.1	UniParc:UPI000276578D	SEG:seg

Description

AGO1A [Source:UniProtKB/TrEMBL;Acc:K4C8V0]

Coordinates

chr6:-:44570824..44579640

Molecular Weight (calculated)

116863.0 Da

IEP (calculated)

9.802

GRAVY (calculated)

-0.509

Length

1054 amino acids

Sequence
(BLAST)

0001: MVRKRRTDVP GGAESSESHE TGGGRGGVQR PPPQQQQGGG RGSGPQRGGY GGRGGGGAPR GGIAPQQSYG GPPEYYQQGR GTQQYQRGGG QPQRRGGIGG
0101: RGAPSGGSSR PPVPELHQAT ETPHQPVPYG RPAETYSEAG SSSQPPEPMT HQVTQQFQQI AVQPEAGASQ AIPPVSSKSM RFPLRPGKGS NGTRCIVKAN
0201: HFFAELPDKD LHQYDVSITP EVASRGVNRA VMEQLVKLYR ESHLGKRLPA YDGRKSLYTA GPLPFVQKDF KITLLDDDDG PGGARREREF KVVIKLAARA
0301: DLHHLGMFLQ GRQADAPQEA LQVLDIVLRE LPTSRYCPVG RSFYSPDLGR RQPLGEGLES WRGFYQSIRP TQMGLSLNID MSSTAFIEPL PVIEFVSQLL
0401: NRDISSRPLS DADRVKIKKA LRGVKVEVTH RGNMRRKYRI SGLTSQATRE LTFPVDERGT MKAVVEYFRE TYGFVIQHTQ LPCLQVGNTQ RPNYLPMEVC
0501: KIVEGQRYSK RLNERQITAL LKVTCQRPQE RENDILQTVR HNAYSDDPYA REFGIKISEK LAQVEARILP APWLKYHDTG REKDCLPQVG QWNMMNKKMV
0601: NGGTVNNWIC INFSRNVQDS VARGFCSELA QMCMISGMIF NPNPVLPPVS ARPDQVERVL KTRFHDAMTK LQPNGRELDL LIVILPDNNG SLYGDLKRIC
0701: ETDLGIVSQC CLTKHVFKMS KQYLANVSLK INVKVGGRNT VLVDAISRRI PLVSDRPTII FGADVTHPHP GEDSSPSIAA VVASQDWPEI TKYAGLVSAQ
0801: AHRQELIQDL YKTWQDPTRG TVTGGMIKEL LISFRRATGQ KPQRIIFYRD GVSEGQFYQV LLFELDAIRK ACASLEPNYQ PPVTFVVVQK RHHTRLFANN
0901: HRDRNAVDRS GNILPGTVVD SKICHPTEFD FYLCSHAGIQ GTSRPAHYHV LWDENNFSAD GLQSLTNNLC YTYARCTRSV SIVPPAYYAH LAAFRARFYM
1001: EPETSDGGSV TSGAAPYRGG VGAVGRSTRA PGVGAAVRPL PALKENVKRV MFYC

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.