CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38925	Soybean	endoplasmic reticulum	97.53	97.07
KRG99173	Soybean	cytosol	13.77	92.95
VIT_19s0014g01840.t01	Wine grape	cytosol, nucleus, plastid	63.91	86.62
Solyc06g072300.2.1	Tomato	nucleus	83.19	83.11
PGSC0003DMT400069313	Potato	cytosol	82.91	82.83
VIT_17s0053g00680.t01	Wine grape	nucleus	84.81	82.3
Solyc03g098280.2.1	Tomato	nucleus	75.78	81.43
CDY04311	Canola	cytosol, nucleus, plastid	74.07	79.59
AT1G48410.2	Thale cress	nucleus	78.54	78.76
CDY41831	Canola	nucleus	77.21	77.87
CDY68174	Canola	nucleus	77.59	77.66
PGSC0003DMT400079716	Potato	nucleus	81.39	76.04
Bra014136.1-P	Field mustard	nucleus	77.87	76.0
Bra032254.1-P	Field mustard	nucleus	77.78	73.72
CDY23683	Canola	cytosol, nucleus, plastid	75.78	73.48
KRG91384	Soybean	cytosol	66.0	71.36
KRH35431	Soybean	cytosol	65.62	70.94
KRH69078	Soybean	cytosol	65.24	70.68
KRH31645	Soybean	nucleus	63.34	70.28
KRH56656	Soybean	cytosol	60.21	69.82
KRH63036	Soybean	cytosol	60.21	69.75
KRH03770	Soybean	nucleus	59.64	69.55
KRH54842	Soybean	nucleus	59.73	69.2
KRH25139	Soybean	plastid	49.95	54.73
KRH30536	Soybean	plastid	45.58	53.93
KRH70802	Soybean	nucleus	35.23	35.98
KRH14678	Soybean	nucleus	30.77	35.76
KRH73469	Soybean	nucleus	30.77	35.76
KRH74941	Soybean	nucleus	34.85	35.67
KRG89867	Soybean	nucleus	31.72	35.27
KRH20672	Soybean	nucleus	29.34	33.84
KRG89432	Soybean	nucleus	29.44	32.09
KRH36727	Soybean	nucleus	13.68	31.79
KRH56276	Soybean	cytosol	23.74	30.08
KRH11732	Soybean	nucleus	29.15	29.6

Protein Annotations

EntrezGene:100778754	MapMan:16.10.3	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	EMBL:ACUP02010276
InterPro:ArgoL1	InterPro:ArgoL2	InterPro:Argonaut_Gly-rich	InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	EnsemblPlantsGene:GLYMA_16G217300
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0031047	UniProt:I1MQL3	InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397
EnsemblPlants:KRH09472	ProteinID:KRH09472	ProteinID:KRH09472.1	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170
PFAM:PF02171	PFAM:PF08699	PFAM:PF12764	PFAM:PF16486	PFAM:PF16487	PFAM:PF16488
PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF102	InterPro:Piwi	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	SMART:SM00949	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098
UniParc:UPI000233B35D	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:37420630..37427964

Molecular Weight (calculated)

116511.0 Da

IEP (calculated)

9.638

GRAVY (calculated)

-0.475

Length

1053 amino acids

Sequence
(BLAST)

0001: MVRKRRTELP SGGESSEAQH PSERSAPPPQ QQAAAAAPGG AGPQGGRGWG PQGGRGGGRS RGMPQQQYGA PPDYQGRGRG GPSQQGGRGG YGSGRSGGGG
0101: GGMGSGRGVG PSYGGPSRPP APELHQATSV QSYQTGVSSQ PASSEASSSL PPEPIDLEQS MGQMVLHSEP APTPPPASKS SMRFPLRPGK GSYGTKCVVK
0201: ANHFFAELPN KDLHQYDVTI TPEVISRGVN RAVMEQLVRL YRESHLGKRL PAYDGRKSLY TAGPLPFMSK EFRIVLVDDD EGAGGQRRDR EFKVVIKLAA
0301: RADLHHLGLF LQGRQTDAPQ EALQVLDIVL RELPTTRYCP VGRSFYSPDL GRRQPLGEGL ESWRGFYQSI RPTQMGLSLN IDMSSTAFIE PLPVIDFVTQ
0401: LLNRDVSARP LSDADRVKIK KALRGIKVEV THRGNMRRKY RISGLTSQAT RELTFPVDER GTMKSVVEYF YETYGFVIQH TQWPCLQVGN AQRPNYLPME
0501: VCKIVEGQRY SKRLNERQIT NLLRVTCQRP GERERDIMQT VHHNAYHEDP YAKEFGIKIS EKLAQVEARI LPAPWLKYHD TGREKDCLPQ VGQWNMMNKK
0601: MVNGGTVNNW FCINFSRNVQ DSVARGFCYE LAQMCYISGM AFTPEPVVPP VSARPDQVEK VLKTRYHDAK NKLQGRELDL LIVILPDNNG SLYGDLKRIC
0701: ETDLGLVSQC CLTKHVFKMS KQYLANVALK INVKVGGRNT VLVDALSRRI PLVSDRPTII FGADVTHPHP GEDSSPSIAA VVASQDYPEI TKYAGLVCAQ
0801: VHRQELIQDL FKQWQDPVRG TVTGGMIKEL LISFRRATGQ KPQRIIFYRD GVSEGQFYQV LLFELDAIRK ACASLEPNYQ PPVTFVVVQK RHHTRLFASN
0901: HHDKSSVDKS GNILPGTVVD SKICHPTEFD FYLCSHAGIQ GTSRPAHYHV LWDENNFTAD ALQTLTNNLC YTYARCTRSV SIVPPAYYAH LAAFRARFYM
1001: EPETSDSGSM TSGAVAGRGM GGVGRSTRVP GANAAVRPLP ALKENVKRVM FYC

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.