Factsheet for PGSC0003DMT400079716

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g098280.2.1	Tomato	nucleus	85.09	97.86
PGSC0003DMT400069313	Potato	cytosol	82.96	88.71
VIT_19s0014g01840.t01	Wine grape	cytosol, nucleus, plastid	58.74	85.2
Zm00001d044183_P001	Maize	cytosol	13.31	82.87
Zm00001d037833_P001	Maize	mitochondrion	18.19	82.66
KRH38925	Soybean	endoplasmic reticulum	76.75	81.76
KRH09472	Soybean	nucleus	76.04	81.39
VIT_17s0053g00680.t01	Wine grape	nucleus	78.17	81.2
CDY04311	Canola	cytosol, nucleus, plastid	69.03	79.39
GSMUA_Achr3P13970_001	Banana	nucleus	74.27	78.96
AT1G48410.2	Thale cress	nucleus	72.67	78.0
CDY41831	Canola	nucleus	72.05	77.78
CDY68174	Canola	nucleus	72.4	77.57
TraesCS7D01G552900.1	Wheat	mitochondrion	31.23	77.36
GSMUA_AchrUn_...	Banana	cytosol	13.4	77.04
OQU82149	Sorghum	nucleus	73.2	76.6
Bra014136.1-P	Field mustard	nucleus	72.58	75.81
TraesCS7D01G553200.1	Wheat	nucleus, plastid	32.21	75.78
GSMUA_Achr1P17950_001	Banana	nucleus	70.63	75.45
Os04t0566500-04	Rice	nucleus	73.2	74.93
GSMUA_Achr1P07120_001	Banana	cytosol	70.01	74.65
GSMUA_Achr3P27070_001	Banana	nucleus	71.16	74.54
GSMUA_AchrUn_...	Banana	mitochondrion	70.19	74.34
Os02t0672200-01	Rice	cytosol	70.98	73.94
TraesCS2D01G400200.1	Wheat	nucleus	72.05	73.89
TraesCSU01G081900.1	Wheat	plastid	64.06	73.82
TraesCS2B01G421000.2	Wheat	nucleus	71.96	73.59
Bra032254.1-P	Field mustard	nucleus	72.49	73.54
CDY23683	Canola	cytosol, nucleus, plastid	70.72	73.39
Zm00001d002650_P003	Maize	nucleus	73.03	73.09
Os02t0831600-01	Rice	extracellular	65.48	73.0
Zm00001d026111_P014	Maize	nucleus	70.81	72.88
TraesCS2A01G403100.4	Wheat	nucleus	71.87	72.32
TraesCS6B01G466700.1	Wheat	nucleus	64.24	71.47
PGSC0003DMT400077569	Potato	nucleus, plastid	60.6	71.22
EES18841	Sorghum	nucleus	69.92	71.06
KXG20965	Sorghum	nucleus	66.02	70.99
Os06t0729300-01	Rice	nucleus	65.22	70.81
TraesCS6B01G270900.1	Wheat	nucleus	68.15	70.78
TraesCS6A01G254600.2	Wheat	plastid	68.15	70.78
Zm00001d011096_P059	Maize	nucleus	69.57	70.76
TraesCS6D01G403900.1	Wheat	plastid	65.04	69.48
Zm00001d025331_P002	Maize	cytosol	33.81	69.02
TraesCS6D01G235900.1	Wheat	endoplasmic reticulum	68.15	69.0
GSMUA_Achr7P04100_001	Banana	extracellular	15.17	68.95
Zm00001d035747_P027	Maize	endoplasmic reticulum, plastid	70.01	68.67
TraesCS7D01G553000.1	Wheat	cytosol	62.56	68.38
TraesCSU01G065300.1	Wheat	nucleus	72.32	68.37
TraesCS7A01G557400.1	Wheat	plastid	62.56	68.31
TraesCS7B01G482100.1	Wheat	nucleus	62.47	68.22
Zm00001d025073_P001	Maize	cytosol	23.43	68.04
TraesCS7D01G036100.3	Wheat	endoplasmic reticulum, golgi	72.23	67.27
TraesCS7A01G040700.5	Wheat	endoplasmic reticulum, golgi, vacuole	71.96	67.02
HORVU7Hr1G120600.3	Barley	cytosol, nucleus	62.38	66.07
PGSC0003DMT400053301	Potato	nucleus	52.88	64.78
HORVU7Hr1G007000.14	Barley	nucleus	69.57	64.42
Zm00001d014875_P001	Maize	nucleus	61.49	64.23
OQU86027	Sorghum	plastid	62.11	63.41
TraesCS3B01G027100.1	Wheat	cytosol	8.52	62.75
TraesCS2A01G258200.1	Wheat	cytosol	36.47	61.71
GSMUA_AchrUn_...	Banana	cytosol	15.97	59.21
TraesCS1D01G151300.3	Wheat	plastid	42.5	56.42
TraesCS5B01G116900.5	Wheat	cytosol, mitochondrion, nucleus, plastid	42.32	56.18
TraesCS2A01G258100.1	Wheat	mitochondrion	42.5	54.68
PGSC0003DMT400018363	Potato	cytosol, nucleus, plastid	48.18	52.98
Os02t0169400-01	Rice	nucleus	41.17	52.97
PGSC0003DMT400039204	Potato	cytosol	6.21	46.67
HORVU2Hr1G103840.1	Barley	cytosol	10.29	46.4
PGSC0003DMT400070806	Potato	nucleus	11.8	45.55
PGSC0003DMT400062439	Potato	nucleus	32.03	36.03
PGSC0003DMT400058471	Potato	nucleus	28.66	35.53
PGSC0003DMT400054667	Potato	cytosol	22.36	34.52
PGSC0003DMT400069459	Potato	nucleus	27.95	34.5
PGSC0003DMT400054669	Potato	cytosol	29.9	32.06
PGSC0003DMT400054661	Potato	nucleus	24.31	27.96

Protein Annotations

EntrezGene:102582607	MapMan:16.10.3	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	InterPro:ArgoL1
InterPro:ArgoL2	InterPro:Argonaut_Gly-rich	InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0031047
InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	UniProt:M1D2B9	InterPro:PAZ_dom	InterPro:PAZ_dom_sf
PFAM:PF02170	PFAM:PF02171	PFAM:PF08699	PFAM:PF12764	PFAM:PF16486	PFAM:PF16487
PFAM:PF16488	EnsemblPlantsGene:PGSC0003DMG401031045	PGSC:PGSC0003DMG401031045	EnsemblPlants:PGSC0003DMT400079716	PFscan:PS50821	PFscan:PS50822
PANTHER:PTHR22891	PANTHER:PTHR22891:SF102	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00949
SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	UniParc:UPI000295B9FD	RefSeq:XP_006364394.1
SEG:seg	:	:	:	:	:

Description

AGO1-1 [Source:PGSC_GENE;Acc:PGSC0003DMG401031045]

Coordinates

chr3:-:44888353..44895794

Molecular Weight (calculated)

124707.0 Da

IEP (calculated)

9.790

GRAVY (calculated)

-0.598

Length

1127 amino acids

Sequence
(BLAST)

0001: MVRKRRTELP GSGESSGSQE TVGGQGRGQY PPQQQQQEGG YQGGGQGRGM RPPHQQQQQL GGYQGGGQGR GQRPPQQHQQ EGGYQGGGQG RGQRPPQQLQ
0101: QEGGGRGWRP QQGGYGGRGS GGAPPRGMAP QQSYGGQPEY YQQGRGTQQH QQRGGGPPQQ HGGIGGRGAP SGGPSRPPIP ELHQATTQTQ HQAVMTTQPI
0201: PYGRPADTSM EVGSSSEPPE MSTLQVTQQF QQLAVQPEAA ATQTIPPVSS KSLRFPLRPG KGKFGQSCIV KANHFFAELP DKDLHQYDVT ITPEVSSRGV
0301: NRAVMAQLVL LYQESHLGKR LPAYDGRKSL YTAGPLPFVQ KEFKITLTDD DDGPGGARRE REFKVVIKFA SRADLHHLGM FLEGRQADAP QEALQVLDIV
0401: LRELPTSKYC PVGRSFYSPN LGRRQPLGEG LESWRGFYQS IRPTQMGLSL NIDMSSTSFI EPLPVIDFVT QLLNRDVSSR PLSDADRVKI KKALRGVKVE
0501: VTHRGNMRRK YRIANLTSQA TRELTFPVDE KGTLKSVIEY FRETYGFVIQ HTQWPCLQVG NQQRPNYLPM EVCKIVEGQR YSKRLNEKQI TALLKVTCQR
0601: PQDRERDILE TVKHNAYAED KYAKEFGIKI SDKLAQVEAR ILPPPWLKYH DNGREKDCLP QVGQWNMMNK KMVNGGTVAN WICINFSRNV QDSVAHGFCS
0701: ELAQMCGISG MNFNPNPVLP PTSARPDQVE RVLKTRFHDA MTKLQPLSKE LDLLVVILPD NNGSLYGDLK RICETELGVV SQCCLTKHVF KMSKQYLANV
0801: ALKINVKVGG RNTVLVDAIS RRIPLVSDRP TIIFGADVTH PHPGEDSSPS IAAVVASQDW PEITKYAGLV SAQAHRQELI QDLYTTRQDP VKGTVSGGMI
0901: KDLLISFRRA TGQKPQRIIF YRDGVSEGQF YQVLLYELDA IRKACASLEP NYQPPVTFVV VQKRHHTRLF ANNHRDRNAV DRSGNIIPGT VVDSKICHPT
1001: EFDFYLCSHA GIQGTSRPAH YHVLWDENKF TADGLQSLTN NLCYTYARCT RSVSIVPPAY YAHLAAFRAR FYMEPETSDG GSVTSGAAGR GFGAGAAGRN
1101: TRAPGAGAAV RPLPALKDNV KRVMFYC

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.