Factsheet for PGSC0003DMT400070806

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039204	Potato	cytosol	30.82	60.0
TraesCS7D01G458800.1	Wheat	nucleus	64.38	40.34
Solyc01g096750.1.1	Tomato	nucleus	98.29	32.58
Zm00001d040429_P012	Maize	nucleus	76.03	24.64
Os01t0275600-01	Rice	nucleus	75.68	24.45
OQU86696	Sorghum	nucleus	74.32	24.11
PGSC0003DMT400058471	Potato	nucleus	74.66	23.98
Zm00001d008249_P012	Maize	nucleus	73.63	23.89
EES18816	Sorghum	nucleus	73.97	23.76
Os04t0151800-02	Rice	nucleus	73.97	23.71
TraesCS3A01G188400.1	Wheat	nucleus	74.32	23.69
PGSC0003DMT400069459	Potato	nucleus	73.97	23.66
HORVU3Hr1G038830.1	Barley	nucleus	73.97	23.43
GSMUA_Achr9P05150_001	Banana	nucleus	73.29	23.39
TraesCS7A01G521000.1	Wheat	nucleus	64.38	23.18
Zm00001d039214_P025	Maize	nucleus	73.29	23.16
TraesCS7B01G437900.1	Wheat	cytosol	63.7	23.05
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	73.97	22.88
TraesCS7A01G533100.1	Wheat	cytosol	69.86	22.64
TraesCS1D01G453600.1	Wheat	nucleus	71.23	22.56
TraesCS7B01G450300.1	Wheat	nucleus	70.89	22.52
TraesCS1A01G445500.1	Wheat	golgi, unclear	71.23	22.49
TraesCS1B01G480100.1	Wheat	nucleus	71.23	22.44
VIT_13s0175g00140.t01	Wine grape	nucleus	67.12	22.15
TraesCS7D01G520400.1	Wheat	nucleus	68.15	21.89
TraesCS3D01G191600.5	Wheat	nucleus	74.32	21.66
TraesCS7B01G437700.1	Wheat	nucleus	65.07	21.62
EES00570	Sorghum	nucleus	66.44	21.6
TraesCS7B01G450200.2	Wheat	nucleus	63.7	20.09
KRH56276	Soybean	cytosol	52.4	18.41
PGSC0003DMT400053301	Potato	nucleus	45.55	14.46
PGSC0003DMT400077569	Potato	nucleus, plastid	45.89	13.97
PGSC0003DMT400054667	Potato	cytosol	34.93	13.97
PGSC0003DMT400069313	Potato	cytosol	46.92	13.0
Os01t0275200-00	Rice	golgi, peroxisome, plastid	20.55	12.85
PGSC0003DMT400018363	Potato	cytosol, nucleus, plastid	44.18	12.59
TraesCS7B01G373400.1	Wheat	nucleus	33.56	12.47
PGSC0003DMT400079716	Potato	nucleus	45.55	11.8
PGSC0003DMT400062439	Potato	nucleus	38.01	11.08
PGSC0003DMT400054669	Potato	cytosol	34.25	9.51
PGSC0003DMT400054661	Potato	nucleus	29.79	8.88
HORVU7Hr1G107770.1	Barley	nucleus	5.14	2.51
TraesCS7D01G458900.1	Wheat	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400070806	EnsemblPlantsGene:PGSC0003DMG400027529	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR003165	InterPro:IPR036397	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	PANTHER:PTHR22891
PANTHER:PTHR22891:SF20	PFAM:PF02171	PFscan:PS50822	PGSC:PGSC0003DMG400027529	SMART:SM00950	SUPFAM:SSF53098
UniParc:UPI0002959A22	UniProt:M1CMR0	MapMan:35.1	:	:	:

Description

Eukaryotic translation initiation factor 2c [Source:PGSC_GENE;Acc:PGSC0003DMG400027529]

Coordinates

chr1:+:74518738..74520755

Molecular Weight (calculated)

32443.6 Da

IEP (calculated)

6.503

GRAVY (calculated)

-0.126

Length

292 amino acids

Sequence
(BLAST)

001: MNSFLTTELA PTLPQISKVP TIIIGMDVSH GSPGRADAPS IAAVVSSRQW PFISRYRAAV CTQSPKLEMI DSLYKKVSDT EDEGLFRELL RDFYVSSKNV
101: KPEHIIIFRD GVSESQFNQV INIELNQIIE ACNHLEEDWS PKFTVIVAQK NHHTRFFQTN SPDNVPPGTV IDNAVCHPKT NDFYMCAHAG PIGTTRPTHY
201: HILHDEIGFS ADDMQELVHS LSYVYQRSTT AISVVAPICY AHLAAAQVAQ FIKFDEISEA TSSHGGVSTA GTVLVPPLPR LHKNVRSSMF FC

Best Arabidopsis Sequence Match ( AT2G27040.1 )
(BLAST)

001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC

Arabidopsis Description

AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.