Factsheet for TraesCS3A01G188400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G324800.1
TraesCS1B01G337800.2
TraesCS1D01G325500.1
TraesCS6A01G123800.1
TraesCS6B01G094400.1
TraesCS6B01G151900.1
TraesCS6D01G113900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27040.1	TraesCS6A01G123800.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6B01G094400.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6B01G151900.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6D01G113900.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS1A01G324800.1	AT5G04290.1	19410546
AT2G27040.1	TraesCS1B01G337800.2	AT5G04290.1	19410546
AT2G27040.1	TraesCS1D01G325500.1	AT5G04290.1	19410546

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G038830.1	Barley	nucleus	96.83	96.2
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	99.13	96.19
TraesCS3D01G191600.5	Wheat	nucleus	99.45	90.92
Os01t0275600-01	Rice	nucleus	85.59	86.73
Zm00001d040429_P012	Maize	nucleus	82.42	83.8
Zm00001d008249_P012	Maize	nucleus	81.44	82.89
OQU86696	Sorghum	nucleus	81.44	82.89
TraesCS1A01G445500.1	Wheat	golgi, unclear	75.55	74.81
PGSC0003DMT400070806	Potato	nucleus	23.69	74.32
GSMUA_Achr9P05150_001	Banana	nucleus	71.94	72.02
VIT_06s0009g01200.t01	Wine grape	nucleus	71.07	71.3
KRH14678	Soybean	nucleus	69.54	70.31
Solyc01g008960.2.1	Tomato	nucleus	69.65	70.19
TraesCS7A01G533100.1	Wheat	cytosol	69.0	70.14
PGSC0003DMT400058471	Potato	nucleus	69.43	69.97
KRH73469	Soybean	nucleus	68.89	69.65
PGSC0003DMT400069459	Potato	nucleus	68.12	68.35
Solyc06g073540.2.1	Tomato	nucleus	68.12	68.35
CDY72062	Canola	plastid	22.05	68.01
Solyc01g096750.1.1	Tomato	nucleus	65.17	67.76
VIT_08s0040g00070.t01	Wine grape	nucleus	67.36	67.21
KRG89867	Soybean	nucleus	68.23	66.0
CDY48192	Canola	nucleus	65.07	64.64
CDY04475	Canola	nucleus	65.07	64.57
CDY56413	Canola	nucleus	65.07	64.57
Bra020152.1-P	Field mustard	nucleus	63.86	64.57
CDX77061	Canola	nucleus	64.96	64.53
Bra034318.1-P	Field mustard	nucleus	64.96	64.53
AT5G21150.1	Thale cress	nucleus	63.1	64.51
CDY09103	Canola	nucleus	63.76	64.46
AT2G27040.1	Thale cress	nucleus	64.96	64.39
Solyc06g073530.1.1	Tomato	nucleus	63.43	64.27
CDX92417	Canola	nucleus	44.43	63.2
VIT_13s0175g00140.t01	Wine grape	nucleus	60.48	62.6
Bra002361.1-P	Field mustard	nucleus	62.01	62.35
CDX92405	Canola	nucleus	61.35	61.42
CDX92406	Canola	nucleus	59.61	60.4
TraesCS7A01G521000.1	Wheat	nucleus	53.28	60.17
CDY16587	Canola	nucleus	57.75	59.98
AT5G21030.2	Thale cress	cytosol	55.9	59.95
CDY59516	Canola	nucleus	59.28	59.93
TraesCS5A01G165900.1	Wheat	cytosol	57.31	59.46
PGSC0003DMT400039204	Potato	cytosol	9.61	58.67
Bra002360.1-P	Field mustard	nucleus	59.17	58.28
CDY16595	Canola	nucleus	54.59	54.35
KRH56276	Soybean	cytosol	48.91	53.91
Solyc03g111760.2.1	Tomato	mitochondrion	46.94	46.94
CDY62055	Canola	nucleus	27.07	43.06
TraesCS5A01G446000.1	Wheat	cytosol	33.3	35.92
TraesCS4A01G288300.1	Wheat	plastid	33.08	35.36
TraesCS4A01G288000.1	Wheat	cytosol	27.4	35.01
TraesCS2A01G258200.1	Wheat	cytosol	25.33	34.83
TraesCS7A01G371200.2	Wheat	cytosol	35.37	33.68
TraesCS6A01G178100.2	Wheat	plastid	33.52	32.38
TraesCS7A01G067500.2	Wheat	cytosol	29.8	31.97
TraesCS2A01G258100.1	Wheat	mitochondrion	30.02	31.39
Bra002349.1-P	Field mustard	nucleus	56.88	30.63
TraesCS7A01G557400.1	Wheat	plastid	34.39	30.52
TraesCS6A01G254600.2	Wheat	plastid	35.92	30.32
TraesCS2A01G403100.4	Wheat	nucleus	35.92	29.38
TraesCS2A01G168900.1	Wheat	cytosol	32.64	28.83
TraesCS3A01G116800.1	Wheat	nucleus	33.19	28.76
TraesCS2A01G419800.2	Wheat	nucleus	20.63	26.81
TraesCS7A01G040700.5	Wheat	endoplasmic reticulum, golgi, vacuole	35.37	26.78
TraesCS2A01G414800.1	Wheat	nucleus	26.75	26.23
TraesCS2A01G419900.1	Wheat	nucleus	27.51	24.02
TraesCS2A01G419500.1	Wheat	nucleus	23.14	19.91

Protein Annotations

MapMan:12.5.1.13	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	InterPro:IPR003100
InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170	PFAM:PF02171
PFAM:PF08699	PFAM:PF16486	PFAM:PF16488	PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891
PANTHER:PTHR22891:SF56	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00950	SMART:SM01163
SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS3A01G188400	EnsemblPlants:TraesCS3A01G188400.1	TIGR:cd02846	TIGR:cd04657
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:+:227911319..227916647

Molecular Weight (calculated)

101904.0 Da

IEP (calculated)

9.195

GRAVY (calculated)

-0.358

Length

916 amino acids

Sequence
(BLAST)

001: MESHGEDLPP PPPLPPNAEP IKAESADDLP PPPPLLPIKP EEAKKISKPK RALIARPGFG KRGNPIQLVT NHFKVSLKTT DEFFHHYYVN LKYEDDRPVD
101: GKGVGRKVID KLAQTYPSEL AHKDFAYDGE KSLFTIGALP QINNEFVVVL EDVSSGKTPA NGSPGNDSPD KKRVKRPYQT KTFKVELSFA ARIPMSAIAM
201: ALKGQESEHT QEAIRVIDII LRQHSAKQGC LLVRQSFFHN NPSNFVDLGG GVMGCRGFHS SFRATQSGLS LNIDVSTTMI VKPGPVVDFL LANQKVDHPN
301: KIDWAKAKRA LKNLRIKTSP ANTEYKIVGL SERNCYEQMF SLKQRNGGNG DPEAIEISVY DYFVKNRGIE LRYSGDFPCI NVGKPRRPTY FPIELCQLVP
401: LQRYTKSLST LQRSSLVEKS RQKPQERMSV LSDVLKRSSY DTEPMLKACG ISIAQGFTQV AGRVLQAPKL KAGNGEDIFT RNGRWNFNNK RLARACVVDR
501: WAVVNFSARC NTMNLVNDLI KCGGMKGITV EKPHIVIEEN GSMRRAPAPK RVEDMFEQVK SKLPGAPKFL LCILAERKNS DVYGPWKRKC LADFGIVTQC
601: VAPTRVNDQY LTNVLLKINA KLGGMNSLLQ IEMSPSIPLV SKVPTLILGM DVSHGSPGQS DIPSIAAVVG SREWPLVSKY RASVRSQSPK LEMIDSLFKP
701: QGTDDDGLVR ECLIDFYTSS GKRKPDQIII FRDGVSESQF NQVLNIELDQ IIEACKFLDE NWNPKFTLIV AQKNHHTKFF IPGSPDNVPP GTVVDNAVCH
801: PRNYDFYMCA HAGMIGTTRP THYHILHDEI HFAADDLQDL VHSLSYVYQR STTAISVVSP ICYAHLAAAQ VAQFIKFDEM SETSSSQGGG HTSAGSAPVQ
901: ELPRLHEKVR SSMFFC

Best Arabidopsis Sequence Match ( AT2G27040.2 )
(BLAST)

001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC

Arabidopsis Description

AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.