Factsheet for Solyc06g073530.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g096390.2.1
Solyc11g008150.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27040.1	Solyc01g096390.2.1	AT2G40030.1	19410546
AT2G27040.1	Solyc11g008150.1.1	AT5G04290.1	19410546

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069459	Potato	nucleus	86.84	85.98
Solyc06g073540.2.1	Tomato	nucleus	86.39	85.54
Solyc01g008960.2.1	Tomato	nucleus	78.1	77.67
VIT_06s0009g01200.t01	Wine grape	nucleus	75.55	74.81
KRH73469	Soybean	nucleus	71.13	70.97
KRH14678	Soybean	nucleus	70.8	70.64
KRG89867	Soybean	nucleus	71.13	67.9
CDY48192	Canola	nucleus	67.92	66.59
Bra034318.1-P	Field mustard	nucleus	67.81	66.49
CDX77061	Canola	nucleus	67.81	66.49
CDY04475	Canola	nucleus	67.59	66.2
Os01t0275600-01	Rice	nucleus	66.15	66.15
AT2G27040.1	Thale cress	nucleus	67.59	66.13
CDY56413	Canola	nucleus	67.48	66.09
Os04t0151800-02	Rice	nucleus	66.37	65.86
Solyc01g096750.1.1	Tomato	nucleus	63.38	65.04
Zm00001d040429_P012	Maize	nucleus	64.82	65.04
GSMUA_Achr9P05150_001	Banana	nucleus	65.82	65.03
OQU86696	Sorghum	nucleus	64.71	65.0
Zm00001d008249_P012	Maize	nucleus	64.6	64.89
EES18816	Sorghum	nucleus	64.49	64.14
TraesCS3A01G188400.1	Wheat	nucleus	64.27	63.43
TraesCS1D01G453600.1	Wheat	nucleus	63.83	62.58
HORVU3Hr1G038830.1	Barley	nucleus	63.72	62.47
TraesCS1B01G480100.1	Wheat	nucleus	63.94	62.35
Zm00001d039214_P025	Maize	nucleus	63.72	62.34
TraesCS1A01G445500.1	Wheat	golgi, unclear	63.72	62.27
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	64.27	61.55
TraesCS7A01G533100.1	Wheat	cytosol	60.84	61.04
TraesCS7D01G520400.1	Wheat	nucleus	60.73	60.4
TraesCS7B01G450300.1	Wheat	nucleus	60.51	59.52
TraesCS7D01G458800.1	Wheat	nucleus	30.42	59.01
TraesCS3D01G191600.5	Wheat	nucleus	64.16	57.88
TraesCS7B01G450200.2	Wheat	nucleus	58.85	57.45
TraesCS7A01G521000.1	Wheat	nucleus	50.33	56.1
Solyc07g049500.2.1	Tomato	nucleus	55.97	56.04
TraesCS7B01G437900.1	Wheat	cytosol	49.12	55.02
EES00570	Sorghum	nucleus	53.98	54.34
TraesCS7B01G437700.1	Wheat	nucleus	52.43	53.92
TraesCS7B01G373400.1	Wheat	nucleus	44.36	51.02
Os01t0275200-00	Rice	golgi, peroxisome, plastid	26.33	50.96
TraesCS7D01G458900.1	Wheat	mitochondrion	9.62	47.8
Solyc03g111760.2.1	Tomato	mitochondrion	47.12	46.51
HORVU7Hr1G107770.1	Barley	nucleus	29.76	44.98
CDY62055	Canola	nucleus	27.1	42.53
Solyc03g098280.2.1	Tomato	nucleus	33.85	31.22
Solyc09g082830.2.1	Tomato	nucleus	33.85	31.16
Solyc12g006790.1.1	Tomato	nucleus	31.64	30.65
Solyc06g072300.2.1	Tomato	nucleus	34.85	29.89
Solyc06g074730.2.1	Tomato	nucleus	32.63	29.18
Solyc01g010970.2.1	Tomato	nucleus	28.98	26.2
Solyc02g069270.2.1	Tomato	cytosol	27.21	25.18
Solyc02g069260.2.1	Tomato	nucleus	28.54	24.76
Solyc02g069280.2.1	Tomato	nucleus	27.1	24.52

Protein Annotations

MapMan:12.5.1.13	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0031047	InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397
UniProt:K4C972	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170	PFAM:PF02171	PFAM:PF08699
PFAM:PF16486	PFAM:PF16488	PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF20
InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00949	SMART:SM00950	SMART:SM01163
SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:Solyc06g073530.1	EnsemblPlants:Solyc06g073530.1.1	UniParc:UPI0002765F8E	SEG:seg

Description

No Description!

Coordinates

chr6:+:45327152..45332126

Molecular Weight (calculated)

101284.0 Da

IEP (calculated)

9.060

GRAVY (calculated)

-0.373

Length

904 amino acids

Sequence
(BLAST)

001: MAEQEYGGST EALPPPPPVP LDFSPEKAEP APVEKKLLRV PMARRGLGKK GRNIQILTNH FQVNVSNVDG HFFHYSVALF YEDGQPVEVK GIGRKVLDRV
101: HETYHAELAG KGFAYDGEKS LFTIGSLPRS RFEFTVVLND ITSNRNVGTS SPPNEADRKR LRRPYQSKTY KVKISLAGKI PMQAIANAFR GQEYENSQEA
201: LRVLDIILRQ HAAKKDCLLV RQSFFHNDSN NFVDVGGGVH GLRGFHSSFR TTQSGLSLNI DMSTTMIIKP GPVLDFLIAN QNSRDSVSLD WAKAKRVLKN
301: LKVQTATSNQ EFKITGLSEK SCREQTFILK RRSKDEDCEV QTSEVTVYDY FVNHCNIDLR YSADLPCLNV GKPKRPTYFP IELCTLVSLQ RYTKALSTFQ
401: RASLVEKSRQ KPQERMQILS HALKMNNYDA EPLLHSCGVT INSDFTQIEG RVLSAPELKA GNGVDIFAQS GRWNFNNKRF FESAKVEKWA VVNFSTNCDI
501: GKLVECLTGL GETKGISVEA PLKVFEESRH HRRAPPVGRV DKMFEEIQSK LPDAPKFLLC LLPERKNCDI YGPWKRKNLA DHGIVTQCLA PGRVNDQYLT
601: NLLLKINAKL GGLNSMLAVE VSRSIPMISK VPTMILGMDV SHGSPGQSDV PSIAAVVSSR QWPSISHYRA SVRTQSPKVE IIDNIFKEVS DTRDDGIMRE
701: LLLDFHASSQ QRKPQQILVF RDGVSESQFN QVLNIELDQI IEACKFLDEK WSPKFVIIVA QKNHHTKFFP YGSANNVPPG TIIDNKVCHP RNNDFYLCAH
801: GGMIGTTRPT HYHVLLDEVG FKPDELQELV HNLCYVYQRS TTATSIVAPI GYAHLAAAQV GQWMKSEGTS ETSSSQDGLR NAGPVTVPQL PRLQKNVASS
901: MFFC

Best Arabidopsis Sequence Match ( AT2G27040.2 )
(BLAST)

001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC

Arabidopsis Description

AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.