Skip to main content
crop-pal logo
Field mustard
Search for another protein from :
Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000162.1-P
Bra009470.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G27040.1 Bra000162.1-P AT2G40030.1 19410546
AT2G27040.1 Bra009470.1-P AT5G04290.1 19410546
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY48192 Canola nucleus 99.89 99.89
CDX77061 Canola nucleus 99.24 99.24
AT2G27040.1 Thale cress nucleus 88.72 88.53
Solyc01g008960.2.1 Tomato nucleus 73.43 74.48
PGSC0003DMT400058471 Potato nucleus 73.32 74.37
VIT_06s0009g01200.t01 Wine grape nucleus 73.1 73.82
PGSC0003DMT400069459 Potato nucleus 73.1 73.82
Solyc06g073540.2.1 Tomato nucleus 72.78 73.49
KRH14678 Soybean nucleus 71.91 73.18
KRH73469 Soybean nucleus 71.58 72.85
KRG89867 Soybean nucleus 71.26 69.38
Bra020152.1-P Field mustard nucleus 66.7 67.88
Solyc06g073530.1.1 Tomato nucleus 66.49 67.81
Zm00001d040429_P012 Maize nucleus 65.94 67.48
Zm00001d008249_P012 Maize nucleus 65.51 67.11
GSMUA_Achr9P05150_001 Banana nucleus 66.49 66.99
Os04t0151800-02 Rice nucleus 66.16 66.96
OQU86696 Sorghum nucleus 65.18 66.78
Os01t0275600-01 Rice nucleus 65.4 66.7
Bra002361.1-P Field mustard nucleus 64.86 65.64
TraesCS3A01G188400.1 Wheat nucleus 64.53 64.96
HORVU3Hr1G038830.1 Barley nucleus 64.75 64.75
EES18816 Sorghum nucleus 63.34 64.25
TraesCS1D01G453600.1 Wheat nucleus 63.45 63.45
TraesCS7D01G458800.1 Wheat nucleus 32.0 63.3
TraesCS1A01G445500.1 Wheat golgi, unclear 63.45 63.24
TraesCS1B01G480100.1 Wheat nucleus 63.45 63.11
TraesCS3B01G217300.2 Wheat golgi, nucleus, unclear 64.43 62.92
Zm00001d039214_P025 Maize nucleus 62.69 62.55
Bra022057.1-P Field mustard endoplasmic reticulum, plasma membrane, plastid 14.53 62.04
TraesCS7A01G533100.1 Wheat cytosol 60.09 61.49
TraesCS7D01G520400.1 Wheat nucleus 60.3 61.17
Bra002360.1-P Field mustard nucleus 61.5 60.97
TraesCS7B01G450300.1 Wheat nucleus 59.44 59.63
TraesCS3D01G191600.5 Wheat nucleus 64.43 59.28
CDY62055 Canola nucleus 36.98 59.2
TraesCS7B01G450200.2 Wheat nucleus 57.7 57.45
TraesCS7A01G521000.1 Wheat nucleus 49.67 56.47
TraesCS7B01G437900.1 Wheat cytosol 48.7 55.64
Bra022918.1-P Field mustard nucleus 51.74 55.02
TraesCS7B01G437700.1 Wheat nucleus 52.06 54.61
EES00570 Sorghum nucleus 52.39 53.79
Os01t0275200-00 Rice golgi, peroxisome, plastid 27.01 53.32
TraesCS7B01G373400.1 Wheat nucleus 43.93 51.53
TraesCS7D01G458900.1 Wheat mitochondrion 9.65 48.9
HORVU7Hr1G107770.1 Barley nucleus 29.93 46.15
Bra011993.1-P Field mustard plastid 34.6 33.02
Bra033698.1-P Field mustard plastid 33.84 32.03
Bra002349.1-P Field mustard nucleus 58.68 31.8
Bra014136.1-P Field mustard nucleus 35.03 29.94
Bra032254.1-P Field mustard nucleus 34.82 28.89
Bra003999.1-P Field mustard nucleus 28.63 26.91
Bra040815.1-P Field mustard cytosol 25.92 23.69
Bra023172.1-P Field mustard nucleus 26.14 23.24
Protein Annotations
MapMan:12.5.1.13Gene3D:2.170.260.10Gene3D:3.30.420.10Gene3D:3.40.50.2300ProteinID:AGA95981ProteinID:AGA95981.1
InterPro:ArgoL1InterPro:ArgoL2InterPro:Argonaute_Mid_domInterPro:Argonaute_NEnsemblPlantsGene:Bra034318EnsemblPlants:Bra034318.1
EnsemblPlants:Bra034318.1-PGO:GO:0003674GO:GO:0003676GO:GO:0003682GO:GO:0003723GO:GO:0003824
GO:GO:0004518GO:GO:0004521GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005654GO:GO:0005719GO:GO:0005730GO:GO:0006139
GO:GO:0006259GO:GO:0006306GO:GO:0006342GO:GO:0006464GO:GO:0006950GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009605GO:GO:0009607GO:GO:0009816GO:GO:0009987
GO:GO:0015030GO:GO:0016043GO:GO:0016458GO:GO:0016787GO:GO:0019048GO:GO:0019538
GO:GO:0030422GO:GO:0031047GO:GO:0035197GO:GO:0035198GO:GO:0040029GO:GO:0051567
GO:GO:0051607GO:GO:0070919GO:GO:0080188GO:GO:0090502InterPro:IPR003100InterPro:IPR003165
InterPro:IPR036397EMBL:JQ798290UniProt:M4EZS5InterPro:PAZ_domInterPro:PAZ_dom_sfPFAM:PF02170
PFAM:PF02171PFAM:PF08699PFAM:PF16486PFAM:PF16487PFAM:PF16488PFscan:PS50821
PFscan:PS50822PANTHER:PTHR22891PANTHER:PTHR22891:SF20InterPro:PiwiInterPro:RNaseH-like_sfInterPro:RNaseH_sf
SMART:SM00950SMART:SM01163SUPFAM:SSF101690SUPFAM:SSF53098UniParc:UPI000254388ESEG:seg
Description
AT2G27040 (E=0.0) AGO4, OCP11 | AGO4 (ARGONAUTE 4); nucleic acid binding
Coordinates
chrA04:-:11864141..11868764
Molecular Weight (calculated)
103038.0 Da
IEP (calculated)
8.828
GRAVY (calculated)
-0.419
Length
922 amino acids
Sequence
(BLAST)
001: MDATTGNGAE LESANGSGVS DALPPPPPVI PPNVEPVRVQ TEVAVKKNLR VPMARPGFGS KGQKIQLLTN HFGVKVANLQ GFFYHYSVAL FYDDGRPVEQ
101: KGVGRKVLDK VHETYHSDLD GKQFAYDGEK TLFTFGALPS NKMDFSVVLE EVSSARTNGN ASPNGNEEPS DGDRKRLRQP NRSKSFRVEI SYAAKIPLQA
201: LANAMRGQES ENSQEAIRVL DIILRQHAAR QGCLLVRQSF FHNDPSNCEP VGGNILGCRG FHSSFRTTQG GMSLNMDVTT TMIIKPGPLV DFVIANQGAK
301: DPFTVDWSKA KRTLKNLRIK VSPSNQEYRI TGMSDKPCRE QTFEYRPRNA PKNENGESET VEITVYDYFL RERNLELQYS ADLPCVNVGR PKRPTYIPLE
401: HCTLIPLQRY TKALNTFQRS ALVEKSRQKP QERMNVLSKA LKVSNYDAEP LLRSCGISIS SNFTQVEGRV LPAPKLKMGR GDELFPRNGR WNFNNKQFVE
501: PTKIDKWAVA NFSARCNVRQ LVDDLIRIGG MKGIEIAAPF DVFEEGHQFR RAPPMIRVEK MFEEIQSKLP GAPQFLLCLL PERKNCDIYG PWKKKNLTEY
601: GIVTQCMAPV RQPNDQYLTN CLLKINAKLG GLNSMLSVER TPAFTVISKV PTIILGMDVS HGSPGQSDVP SIAAVVSSRQ WPLVSKYRAS VRTQPSKAEM
701: IESLVKKNGT EDDGIIKELL VDFYTSSGKR KPEHIIIFRD GVSESQFNQV LNIELDQIIE ACKLLDENWN PKFLLLVAQK NHHTKFFQPN SPDNVPPGTI
801: IDNKICHPKN NDFYLCAHAG MIGTTRPTHY HVLYDEIHFS PDELQELVHS LSYVYQRSTT AISVVAPICY AHLAAAQLGT FMKFEDQSET SSSHGGVTAP
901: GPVSVAQLPK LKDNVANSMF FC
Best Arabidopsis Sequence Match ( AT2G27040.2 )
(BLAST)
001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC
Arabidopsis Description
AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.