Factsheet for TraesCS7B01G437900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G324800.1
TraesCS1B01G337800.2
TraesCS1D01G325500.1
TraesCS6A01G123800.1
TraesCS6B01G094400.1
TraesCS6B01G151900.1
TraesCS6D01G113900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27040.1	TraesCS6A01G123800.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6B01G094400.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6B01G151900.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6D01G113900.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS1A01G324800.1	AT5G04290.1	19410546
AT2G27040.1	TraesCS1B01G337800.2	AT5G04290.1	19410546
AT2G27040.1	TraesCS1D01G325500.1	AT5G04290.1	19410546

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G521000.1	Wheat	nucleus	91.33	90.88
TraesCS7B01G437700.1	Wheat	nucleus	98.39	90.33
PGSC0003DMT400070806	Potato	nucleus	23.05	63.7
TraesCS7B01G373400.1	Wheat	nucleus	61.46	63.1
HORVU7Hr1G107770.1	Barley	nucleus	44.24	59.7
CDY72062	Canola	plastid	21.93	59.6
Os01t0275200-00	Rice	golgi, peroxisome, plastid	32.34	55.89
PGSC0003DMT400039204	Potato	cytosol	10.16	54.67
EES00570	Sorghum	nucleus	59.73	53.67
CDX92417	Canola	nucleus	42.63	53.42
VIT_06s0009g01200.t01	Wine grape	nucleus	58.36	51.59
GSMUA_Achr9P05150_001	Banana	nucleus	58.36	51.48
KRH73469	Soybean	nucleus	57.74	51.43
Solyc01g008960.2.1	Tomato	nucleus	57.87	51.38
KRH14678	Soybean	nucleus	57.62	51.32
PGSC0003DMT400058471	Potato	nucleus	57.74	51.27
Solyc06g073540.2.1	Tomato	nucleus	57.74	51.04
PGSC0003DMT400069459	Potato	nucleus	57.62	50.93
TraesCS1B01G480100.1	Wheat	nucleus	58.49	50.92
Solyc01g096750.1.1	Tomato	nucleus	55.27	50.62
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	59.11	50.53
VIT_08s0040g00070.t01	Wine grape	nucleus	56.38	49.56
Solyc06g073530.1.1	Tomato	nucleus	55.02	49.12
AT2G27040.1	Thale cress	nucleus	56.01	48.92
CDY48192	Canola	nucleus	55.76	48.81
VIT_13s0175g00140.t01	Wine grape	nucleus	53.41	48.7
CDX77061	Canola	nucleus	55.64	48.7
Bra034318.1-P	Field mustard	nucleus	55.64	48.7
CDY09103	Canola	nucleus	54.65	48.68
Bra020152.1-P	Field mustard	nucleus	54.52	48.57
CDY04475	Canola	nucleus	55.51	48.54
KRG89867	Soybean	nucleus	56.88	48.47
CDY56413	Canola	nucleus	55.27	48.32
CDY16587	Canola	nucleus	52.66	48.19
AT5G21150.1	Thale cress	nucleus	53.41	48.1
TraesCS5B01G162300.1	Wheat	mitochondrion	53.41	48.0
TraesCS7B01G450300.1	Wheat	nucleus	54.65	47.99
Bra002361.1-P	Field mustard	nucleus	53.78	47.64
CDX92405	Canola	nucleus	53.53	47.21
CDX92406	Canola	nucleus	52.79	47.12
CDY59516	Canola	nucleus	52.79	47.02
AT5G21030.2	Thale cress	cytosol	49.69	46.96
TraesCS7B01G450200.2	Wheat	nucleus	53.78	46.87
Bra002360.1-P	Field mustard	nucleus	52.42	45.48
KRH56276	Soybean	cytosol	46.22	44.89
TraesCS3B01G027100.1	Wheat	cytosol	7.93	41.83
CDY16595	Canola	nucleus	45.72	40.11
Solyc03g111760.2.1	Tomato	mitochondrion	43.74	38.54
TraesCS4B01G026600.1	Wheat	cytosol	20.94	34.85
CDY62055	Canola	nucleus	24.04	33.68
TraesCS3B01G135800.1	Wheat	cytosol	34.57	33.17
TraesCS5B01G468000.1	Wheat	plastid	33.58	31.04
TraesCS5B01G454200.1	Wheat	cytosol	25.77	30.81
TraesCS7B01G256500.1	Wheat	cytosol	35.69	30.13
TraesCS3B01G287600.1	Wheat	nucleus	33.71	30.02
TraesCS6B01G206700.1	Wheat	plastid	34.32	29.22
TraesCS6B01G466700.1	Wheat	nucleus	36.18	28.83
TraesCS5B01G116900.5	Wheat	cytosol, mitochondrion, nucleus, plastid	30.24	28.74
TraesCS5B01G452500.1	Wheat	nucleus	32.34	28.62
TraesCS7B01G482100.1	Wheat	nucleus	35.56	27.81
TraesCS4B01G024000.1	Wheat	nucleus	34.94	27.54
TraesCS6B01G270900.1	Wheat	nucleus	36.68	27.28
TraesCS5B01G451400.2	Wheat	plastid	35.56	27.08
TraesCS2B01G421000.2	Wheat	nucleus	36.93	27.04
TraesCS2B01G195200.2	Wheat	nucleus	33.71	26.98
TraesCS5B01G455700.1	Wheat	cytosol, mitochondrion, plastid	32.71	26.8
Bra002349.1-P	Field mustard	nucleus	51.42	24.4
TraesCS2B01G438600.1	Wheat	cytosol, nucleus, plastid	23.79	23.91
TraesCS5B01G458100.1	Wheat	cytosol	28.0	23.79
TraesCS2B01G434000.1	Wheat	nucleus	29.37	22.57
TraesCS2B01G439000.2	Wheat	nucleus, unclear	28.13	21.7
TraesCS2B01G438200.1	Wheat	nucleus	24.66	18.62

Protein Annotations

MapMan:12.5.1.13	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	InterPro:IPR003100
InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170	PFAM:PF02171
PFAM:PF08699	PFAM:PF16486	PFAM:PF16488	PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891
PANTHER:PTHR22891:SF20	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00950	SMART:SM01163
SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS7B01G437900	EnsemblPlants:TraesCS7B01G437900.1	TIGR:cd02846	TIGR:cd04657
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7B:+:704152440..704157308

Molecular Weight (calculated)

90425.5 Da

IEP (calculated)

8.891

GRAVY (calculated)

-0.347

Length

807 amino acids

Sequence
(BLAST)

001: MKQLHETYAS LLQGKQFAYD GDKSLFTSGP LPFASNVFDV VVDGDASSRK IATSQSPGGD GSPGPSDKKR MKRAGLDKRI KVDITFTAKV PISAIGHVLG
101: GGQDTENSQE VLRVLDIILR QNAARQNCLL VRQSFFRRDS DYVKLGGRVL GCQGFHSSVR PTQSGLLLNV DLSTTKVVEP GPVIVFLLSN QGVTDTSSID
201: WGKAKRALNK LRIETTHTKA EFRIVGLSEN SCYNQTFPLK QKDGNGTVDV TVYDYFMDRW SMKLEKSAHM PCLNVGKPNR PTYLPLEVCR LVPLQRYKRS
301: LSTSQRSKLV EASRQRPDQR MSKLHGELRA NDYDSEPMMR ECGISIVLDF TQVQGRVLEA PQLSVADGRQ LYTPNGRWNF NKDGFIQPIE FTKIWGVVNF
401: STRRDVEDLV FRLFQCGDKK GIKMDKYTAV IQERHQMKHE SPAKRVEDMF HQINRVFGEN NPEFLLCVLP EKNCDIYGPW KRECLAQRGI VTQCLVPPPN
501: AKDQYLTNVL LKINAKLGGL NSLLKKEIAR AIPHVSRIPT IIFGMDVSHG SPGRDVPSVA AVVSSLEWPI ISKYRASTLP PRQEMIKTLF KQDGDTDHGL
601: IKDSLVAFLG KDNKLKPEQI IIFRDGVSES QFDQVLNDEL GQIMEACRFF GDEHFGGNWF PKFTVIVAQK NHHTRFFLRN GVNNVPPGTV VDGVICHPRN
701: YDFYMCAHAG IIGTTRPTHY HVLHDEIGFS TDDLQELVHS LSYTYQRSTT AISVVAPIYH AHLAAAQVAK FTRLDDGMSE TSSQAEAAPV PELPRLHPNV
801: ASSMLFC

Best Arabidopsis Sequence Match ( AT2G27040.1 )
(BLAST)

001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC

Arabidopsis Description

AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.