Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G024300.1 | Wheat | cytosol | 52.83 | 98.36 |
| TraesCS4A01G288000.1 | Wheat | cytosol | 68.55 | 97.91 |
| HORVU4Hr1G004030.1 | Barley | mitochondrion | 93.36 | 92.55 |
| OQU91198 | Sorghum | nucleus | 58.5 | 80.62 |
| TraesCS4B01G026600.1 | Wheat | cytosol | 35.16 | 74.23 |
| TraesCS5B01G468000.1 | Wheat | plastid | 62.5 | 73.31 |
| Zm00001d013542_P003 | Maize | nucleus | 73.73 | 71.56 |
| Os03t0682600-00 | Rice | nucleus | 51.27 | 70.28 |
| TraesCS3B01G027100.1 | Wheat | cytosol | 8.98 | 60.13 |
| TraesCS3B01G287600.1 | Wheat | nucleus | 50.1 | 56.62 |
| TraesCS5B01G454200.1 | Wheat | cytosol | 37.21 | 56.44 |
| TraesCS5B01G451400.2 | Wheat | plastid | 54.88 | 53.02 |
| VIT_06s0061g01040.t01 | Wine grape | mitochondrion, nucleus | 53.42 | 53.0 |
| TraesCS2B01G195200.2 | Wheat | nucleus | 51.76 | 52.58 |
| TraesCS5B01G455700.1 | Wheat | cytosol, mitochondrion, plastid | 50.49 | 52.49 |
| TraesCS5B01G452500.1 | Wheat | nucleus | 46.68 | 52.41 |
| KRH25139 | Soybean | plastid | 48.54 | 51.72 |
| CDX71410 | Canola | nucleus | 47.66 | 51.26 |
| VIT_08s0007g04360.t01 | Wine grape | endoplasmic reticulum, golgi, vacuole | 42.48 | 51.12 |
| CDY04517 | Canola | plastid | 47.75 | 51.1 |
| KRH30536 | Soybean | plastid | 44.14 | 50.79 |
| Bra011993.1-P | Field mustard | plastid | 47.75 | 50.62 |
| TraesCS7B01G256500.1 | Wheat | cytosol | 47.17 | 50.52 |
| TraesCS6B01G466700.1 | Wheat | nucleus | 49.12 | 49.65 |
| AT2G27880.1 | Thale cress | cytosol, nucleus, plastid | 47.95 | 49.25 |
| TraesCS6B01G206700.1 | Wheat | plastid | 45.51 | 49.16 |
| TraesCS7B01G482100.1 | Wheat | nucleus | 49.51 | 49.13 |
| PGSC0003DMT400018363 | Potato | cytosol, nucleus, plastid | 48.73 | 48.68 |
| Solyc06g074730.2.1 | Tomato | nucleus | 47.46 | 48.07 |
| TraesCS2B01G421000.2 | Wheat | nucleus | 51.46 | 47.82 |
| TraesCS6B01G270900.1 | Wheat | nucleus | 49.61 | 46.82 |
| TraesCS3B01G135800.1 | Wheat | cytosol | 38.38 | 46.73 |
| GSMUA_Achr6P04510_001 | Banana | nucleus | 55.47 | 45.92 |
| GSMUA_Achr4P17670_001 | Banana | extracellular, plasma membrane | 16.02 | 45.68 |
| TraesCS5B01G116900.5 | Wheat | cytosol, mitochondrion, nucleus, plastid | 36.13 | 43.58 |
| TraesCS5B01G458100.1 | Wheat | cytosol | 38.09 | 41.05 |
| TraesCS7B01G437900.1 | Wheat | cytosol | 27.54 | 34.94 |
| TraesCS5B01G162300.1 | Wheat | mitochondrion | 29.98 | 34.19 |
| TraesCS7B01G437700.1 | Wheat | nucleus | 29.1 | 33.9 |
| TraesCS1B01G480100.1 | Wheat | nucleus | 29.88 | 33.01 |
| TraesCS7B01G450300.1 | Wheat | nucleus | 29.49 | 32.86 |
| TraesCS3B01G217300.2 | Wheat | golgi, nucleus, unclear | 30.08 | 32.63 |
| TraesCS7B01G450200.2 | Wheat | nucleus | 29.2 | 32.29 |
| TraesCS2B01G434000.1 | Wheat | nucleus | 32.13 | 31.33 |
| TraesCS7B01G373400.1 | Wheat | nucleus | 23.93 | 31.17 |
| TraesCS2B01G439000.2 | Wheat | nucleus, unclear | 30.96 | 30.31 |
| TraesCS2B01G438600.1 | Wheat | cytosol, nucleus, plastid | 23.05 | 29.39 |
| TraesCS2B01G438200.1 | Wheat | nucleus | 25.88 | 24.79 |
Protein Annotations
| Gene3D:2.170.260.10 | Gene3D:3.30.420.10 | Gene3D:3.40.50.2300 | MapMan:35.1 | InterPro:ArgoL1 | InterPro:ArgoL2 |
| InterPro:Argonaute_Mid_dom | InterPro:Argonaute_N | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR003100 | InterPro:IPR003165 | InterPro:IPR036397 | InterPro:PAZ_dom | InterPro:PAZ_dom_sf | PFAM:PF02170 |
| PFAM:PF02171 | PFAM:PF08699 | PFAM:PF16486 | PFAM:PF16487 | PFAM:PF16488 | PFscan:PS50821 |
| PFscan:PS50822 | PANTHER:PTHR22891 | PANTHER:PTHR22891:SF49 | InterPro:Piwi | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf |
| SMART:SM00949 | SMART:SM00950 | SMART:SM01163 | SUPFAM:SSF101690 | SUPFAM:SSF53098 | EnsemblPlantsGene:TraesCS4B01G024000 |
| EnsemblPlants:TraesCS4B01G024000.1 | TIGR:cd02846 | TIGR:cd04657 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4B:+:17229197..17236874
Molecular Weight (calculated)
113005.0 Da
IEP (calculated)
9.566
GRAVY (calculated)
-0.409
Length
1024 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSTSARGGGG RRGGRGGDQQ GAVGRGRGRG RGGEQQDAHR GRGGGRGQGG GADAGVQRGG HRDAGRGHLG AHRGGLGRGG LEVGAVERPV GAGRGRPPAT
0101: ATVPGQAEVE ALSGEMERRL AVSEAVQGSS SSAPAAAATG AQESQAAVVV PPRNLPPASS KSTGFHARPG YGTAGKRCRV RANHLLVQVA DKEIYHYDVS
0201: ISPESMARER NRSIINELVR LHKQHLDGRL PVYDGRKGMF TAAPLPFKTK EFIVKVSNTE RGYQGEKEYK VTIKEVAKLN LYNLQQFLAG TQRELPQDTI
0301: QALDIALRET PTAKYTPISR SFFSKSFGHG GDIGSGVECW RGYYQSLRPT QMGLSLNIDI SATAFYKAQP VMDFALEYLN IRGDAPRRLF DQDRLKLKKA
0401: LKGVRVVATH RPDISIRYKI TGITSAPLNE LTFDLDGTRV SVVHYFKRQY DYSLKYIQWP CLQAGSDSRP TYLPMEVCNI LGGQRYSRKL NERQVTNILR
0501: LACERPDKRE GSIVEVINRN NYGIDDNAKE FGIKVMNQLA LVDARVLPPP RLKYHQSGRE QICNPSVGQW NMNNKRMING GSIRHWACVS FGSRLQWNDV
0601: SVFCNYLVGT CNNMGMQVSE TPCVDIVQAR QGNLEAVKNI YRQSAQVLAQ QGLEGQNLEL LFVVLPDGPN ASDCYGRVKR LCEIELGLIT QCCLPKHVQR
0701: AGTQYLQNMA LKINVKVGGR NTVLENALLR RIPLLTDKPT IIFGADVTHP SPGEDVSPSI AAVVASMDWP EVSKYTCLVS SQGHREEIIA DLFTEVKDPQ
0801: KGVIYGGMIR ELLLSFYKAN KSCKPGRIIF YRDGVSEGQF SQVLLYEMDA IYRACSSLEN GYLPQVTFVV VQKRHHTRLF PEDHRSGAMA DRSGNILPGT
0901: VVDTKICHPS EFDFYLCSHA GIQGTSRPTH YHVLFDDSNF TADALQTLTY NLCYTYARCT RSVSIVPPAY YAHLAAFRAR HYLDDNHSDQ GSSSVGGTRM
1001: HDQAVLVKPL PKVKESVRQF MFYC
0101: ATVPGQAEVE ALSGEMERRL AVSEAVQGSS SSAPAAAATG AQESQAAVVV PPRNLPPASS KSTGFHARPG YGTAGKRCRV RANHLLVQVA DKEIYHYDVS
0201: ISPESMARER NRSIINELVR LHKQHLDGRL PVYDGRKGMF TAAPLPFKTK EFIVKVSNTE RGYQGEKEYK VTIKEVAKLN LYNLQQFLAG TQRELPQDTI
0301: QALDIALRET PTAKYTPISR SFFSKSFGHG GDIGSGVECW RGYYQSLRPT QMGLSLNIDI SATAFYKAQP VMDFALEYLN IRGDAPRRLF DQDRLKLKKA
0401: LKGVRVVATH RPDISIRYKI TGITSAPLNE LTFDLDGTRV SVVHYFKRQY DYSLKYIQWP CLQAGSDSRP TYLPMEVCNI LGGQRYSRKL NERQVTNILR
0501: LACERPDKRE GSIVEVINRN NYGIDDNAKE FGIKVMNQLA LVDARVLPPP RLKYHQSGRE QICNPSVGQW NMNNKRMING GSIRHWACVS FGSRLQWNDV
0601: SVFCNYLVGT CNNMGMQVSE TPCVDIVQAR QGNLEAVKNI YRQSAQVLAQ QGLEGQNLEL LFVVLPDGPN ASDCYGRVKR LCEIELGLIT QCCLPKHVQR
0701: AGTQYLQNMA LKINVKVGGR NTVLENALLR RIPLLTDKPT IIFGADVTHP SPGEDVSPSI AAVVASMDWP EVSKYTCLVS SQGHREEIIA DLFTEVKDPQ
0801: KGVIYGGMIR ELLLSFYKAN KSCKPGRIIF YRDGVSEGQF SQVLLYEMDA IYRACSSLEN GYLPQVTFVV VQKRHHTRLF PEDHRSGAMA DRSGNILPGT
0901: VVDTKICHPS EFDFYLCSHA GIQGTSRPTH YHVLFDDSNF TADALQTLTY NLCYTYARCT RSVSIVPPAY YAHLAAFRAR HYLDDNHSDQ GSSSVGGTRM
1001: HDQAVLVKPL PKVKESVRQF MFYC
0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC
Arabidopsis Description
AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.