Factsheet for GSMUA_Achr4P17670_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	18.38	33.67
TraesCS4B01G026600.1	Wheat	cytosol	43.45	32.16
GSMUA_Achr7P04100_001	Banana	extracellular	22.01	31.85
TraesCS4D01G024300.1	Wheat	cytosol	43.45	28.36
OQU91198	Sorghum	nucleus	47.63	23.01
TraesCS4A01G288000.1	Wheat	cytosol	44.01	22.04
Os03t0682600-00	Rice	nucleus	44.57	21.42
TraesCS4A01G288300.1	Wheat	plastid	48.19	20.19
TraesCS4D01G024100.1	Wheat	plastid	47.91	20.07
TraesCS5B01G468000.1	Wheat	plastid	48.19	19.82
OQU91197	Sorghum	plastid	46.52	18.89
GSMUA_Achr6P05310_001	Banana	nucleus	47.91	18.53
CDX71410	Canola	nucleus	48.75	18.38
GSMUA_Achr4P30720_001	Banana	nucleus	47.35	18.22
VIT_08s0007g04360.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	43.18	18.21
CDY04517	Canola	plastid	48.19	18.08
Bra011993.1-P	Field mustard	plastid	48.47	18.01
VIT_06s0061g01040.t01	Wine grape	mitochondrion, nucleus	50.14	17.44
GSMUA_AchrUn_...	Banana	cytosol	14.76	17.43
GSMUA_Achr7P13220_001	Banana	cytosol	45.68	17.34
GSMUA_Achr3P13970_001	Banana	nucleus	50.97	17.26
AT2G27880.1	Thale cress	cytosol, nucleus, plastid	47.91	17.25
GSMUA_AchrUn_...	Banana	mitochondrion	50.97	17.2
KRH25139	Soybean	plastid	45.96	17.17
GSMUA_Achr3P27070_001	Banana	nucleus	51.25	17.1
GSMUA_Achr1P07120_001	Banana	cytosol	50.14	17.03
GSMUA_Achr1P17950_001	Banana	nucleus	49.58	16.87
Zm00001d013542_P003	Maize	nucleus	47.63	16.21
PGSC0003DMT400018363	Potato	cytosol, nucleus, plastid	46.24	16.2
Solyc06g074730.2.1	Tomato	nucleus	45.4	16.12
TraesCS4B01G024000.1	Wheat	nucleus	45.68	16.02
KRH30536	Soybean	plastid	39.55	15.96
HORVU4Hr1G004030.1	Barley	mitochondrion	45.68	15.88
GSMUA_Achr6P04510_001	Banana	nucleus	50.97	14.79
GSMUA_Achr9P05150_001	Banana	nucleus	37.05	14.54
GSMUA_Achr7P26400_001	Banana	cytosol	24.79	13.97
Zm00001d033518_P001	Maize	nucleus	44.29	13.4
GSMUA_Achr9P22630_001	Banana	nucleus	32.03	12.83
GSMUA_Achr9P27810_001	Banana	plastid	28.13	11.6
HORVU2Hr1G045050.1	Barley	cytosol, mitochondrion, plastid	0.84	1.47

Protein Annotations

Gene3D:3.30.420.10	MapMan:35.1	InterPro:ArgoL2	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
EnsemblPlantsGene:GSMUA_Achr4G17670_001	EnsemblPlants:GSMUA_Achr4P17670_001	EnsemblPlants:GSMUA_Achr4T17670_001	InterPro:IPR003165	InterPro:IPR036397	UniProt:M0SPT0
PFAM:PF02171	PFAM:PF16488	PANTHER:PTHR22891	PANTHER:PTHR22891:SF24	InterPro:Piwi	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	SMART:SM00950	SUPFAM:SSF53098	SignalP:SignalP-noTM	UniParc:UPI0002955B01	SEG:seg

Description

Putative Protein argonaute MEL1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G17670_001]

Coordinates

chr4:+:17749271..17753001

Molecular Weight (calculated)

40669.6 Da

IEP (calculated)

7.087

GRAVY (calculated)

0.064

Length

359 amino acids

Sequence
(BLAST)

001: MSELLLSLLI CCSQIVLSIK KIKPFCQMVH QNNYNNDDFT MEFGIKMKYE LTSVEPRVLA APKVVLDEVF RFCGDLIAIF NSAGMVRSLS LSNLLIVFVH
101: YHMLHMTFMR GFYGMIKRIC ESEVVIVSQC LLLYVYGADV TYPLPGEDSS PSISKHVTKF PEVTKYGGLF SGQQHRQEMI QDLFTVIKDT NEGTLYGGMI
201: GNFAPCQDGV SKGQFSHVLL YEMDVIRKAG ASLQQGTVVE KKICCPTEFD FYLCSRAGIQ GTSRSTHYHV LMDETKFSAD GLQMLTHNLY YLAYSSFLSY
301: KMMHFLFDSS TSILCPFGWY YMQGERSDAG SSGRTRDRPV EVQHLPLVKD NVKVVMFSC

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.