Factsheet for TraesCS5B01G468000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G026600.1	Wheat	cytosol	53.49	96.29
TraesCS4D01G024100.1	Wheat	plastid	94.39	96.15
TraesCS4A01G288300.1	Wheat	plastid	94.04	95.8
HORVU2Hr1G045050.1	Barley	cytosol, mitochondrion, plastid	21.19	90.69
TraesCS4B01G024000.1	Wheat	nucleus	73.31	62.5
TraesCS3B01G027100.1	Wheat	cytosol	10.88	62.09
TraesCS5B01G454200.1	Wheat	cytosol	45.48	58.81
TraesCS3B01G287600.1	Wheat	nucleus	60.48	58.28
TraesCS5B01G452500.1	Wheat	nucleus	57.27	54.82
CDX71410	Canola	nucleus	58.19	53.36
VIT_06s0061g01040.t01	Wine grape	mitochondrion, nucleus	62.89	53.2
TraesCS7B01G256500.1	Wheat	cytosol	58.08	53.03
CDY04517	Canola	plastid	57.96	52.87
Bra011993.1-P	Field mustard	plastid	58.19	52.59
TraesCS5B01G451400.2	Wheat	plastid	63.8	52.55
VIT_08s0007g04360.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	50.97	52.29
TraesCS5B01G455700.1	Wheat	cytosol, mitochondrion, plastid	58.65	51.98
TraesCS2B01G195200.2	Wheat	nucleus	59.91	51.88
KRH25139	Soybean	plastid	56.82	51.61
AT2G27880.1	Thale cress	cytosol, nucleus, plastid	58.65	51.35
KRH30536	Soybean	plastid	51.66	50.67
TraesCS6B01G206700.1	Wheat	plastid	54.52	50.21
TraesCS6B01G466700.1	Wheat	nucleus	57.62	49.65
TraesCS7B01G482100.1	Wheat	nucleus	57.04	48.26
PGSC0003DMT400018363	Potato	cytosol, nucleus, plastid	56.59	48.2
GSMUA_Achr4P17670_001	Banana	extracellular, plasma membrane	19.82	48.19
TraesCS3B01G135800.1	Wheat	cytosol	46.05	47.8
Solyc06g074730.2.1	Tomato	nucleus	55.21	47.68
GSMUA_Achr6P04510_001	Banana	nucleus	65.86	46.48
TraesCS6B01G270900.1	Wheat	nucleus	57.5	46.27
TraesCS2B01G421000.2	Wheat	nucleus	57.96	45.92
TraesCS5B01G116900.5	Wheat	cytosol, mitochondrion, nucleus, plastid	42.5	43.7
TraesCS5B01G458100.1	Wheat	cytosol	46.16	42.42
TraesCS7B01G437900.1	Wheat	cytosol	31.04	33.58
TraesCS5B01G162300.1	Wheat	mitochondrion	34.25	33.3
TraesCS7B01G437700.1	Wheat	nucleus	33.22	32.99
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	34.82	32.2
TraesCS1B01G480100.1	Wheat	nucleus	34.14	32.15
TraesCS7B01G450300.1	Wheat	nucleus	33.33	31.66
TraesCS2B01G434000.1	Wheat	nucleus	37.57	31.24
TraesCS7B01G450200.2	Wheat	nucleus	32.19	30.35
TraesCS7B01G373400.1	Wheat	nucleus	26.46	29.39
TraesCS2B01G438600.1	Wheat	cytosol, nucleus, plastid	26.12	28.39
TraesCS2B01G439000.2	Wheat	nucleus, unclear	32.3	26.96
TraesCS2B01G438200.1	Wheat	nucleus	27.72	22.64

Protein Annotations

Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	MapMan:35.1	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170
PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487	PFAM:PF16488	PFscan:PS50821
PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF49	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SMART:SM00949	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS5B01G468000
EnsemblPlants:TraesCS5B01G468000.1	TIGR:cd02846	TIGR:cd04657	SEG:seg	:	:

Description

No Description!

Coordinates

chr5B:+:641560151..641566408

Molecular Weight (calculated)

98369.5 Da

IEP (calculated)

9.391

GRAVY (calculated)

-0.314

Length

873 amino acids

Sequence
(BLAST)

001: MEPRVPAAPA NLPPVSSKAE KFPARPGFGT IGRRCRVRAN HFLVQVADKE IYHYDVAIDL ETRSRGWNRS IINELVKLHK EHLDGRLPVY DGRKSLYTAG
101: ALPFKSKVFV VKLANAAKAN KREEEYKLTV KLASNLDMYS VRQFLAGRSR ELPQDTIQAL DIALRESPTT KYVSISRSFF SQSFGHGGAI GNGVECWRGY
201: YQSLRPTQMG LSLNIDISAT AFYKAQAAVE FALEYLNIRD ASRPLIDQDR IKLKKALRGV RVEATHRTDK TIRYKITSVS SAPLKELIFD QDGVRVSVVQ
301: YFKKQYNYTL KYTNWPCLQA GSDSRPVYLP MEVCSIVGGQ RYSRKLNERQ VSSILKMACE RPAQRESSVL EIVNRNNYGN DEYSKEFGMK VMNQLALVDA
401: RVLPAPRLKY HDSGREKECN PSVGQWNMIN KRMVNGGSIN YWACLTFASR LHPNDIGMFC RDLAHMCNSI GMVMNMEPCV NITQARRQDT VESAIRNIHR
501: HSAEVLTKQG LEGKQLELLI IILPDISGSY GKIKRLCETE LGVITQCCLP KNVQKGGKQY LENLSLKINV KVGGRNTVLE DALYKRIPLL TDVPTIVFGA
601: DVTHPAAGED ACPSIAAVVA SMDWPEVTKY KCLVSSQAHR EEIIADLYAE IKDPQKGLVG GGMIRELLLS FYRATGCKPH RIIFYRDGVS EGQFSQVLLY
701: EMDAIRKACA TLQAGYLPPV TFVVVQKRHH TRLFPENHRA RDLTDRSGNI LPGTVVDTKI CHPTEFDFYL CSHAGIQGTS RPTHYHVLLD ENRFSADALQ
801: TLTYNLCYTY ARCTRSVSIV PPAYYAHLAA FRARYYMEDE FSDGGSSSAT ARSAPARQLP KIRDSVKEFM FYC

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.