Factsheet for TraesCS5B01G451400.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G454200.1	Wheat	cytosol	59.81	93.93
TraesCS5B01G455700.1	Wheat	cytosol, mitochondrion, plastid	86.51	93.1
TraesCS3B01G287600.1	Wheat	nucleus	76.79	89.85
EER90726	Sorghum	cytosol	71.32	89.05
Os03t0789466-00	Rice	cytosol, mitochondrion, nucleus	36.51	84.68
TraesCS5B01G452500.1	Wheat	nucleus	72.74	84.54
Os03t0800200-01	Rice	plasma membrane	84.25	84.4
Zm00001d013063_P001	Maize	nucleus	76.89	80.69
Zm00001d032611_P002	Maize	vacuole	25.75	73.39
TraesCS3B01G027100.1	Wheat	cytosol	10.0	69.28
TraesCS4B01G026600.1	Wheat	cytosol	30.47	66.6
Zm00001d009158_P003	Maize	golgi	27.36	66.36
TraesCS5B01G468000.1	Wheat	plastid	52.55	63.8
TraesCS5B01G458100.1	Wheat	cytosol	56.13	62.63
TraesCS2B01G195200.2	Wheat	nucleus	57.83	60.81
CDX71410	Canola	nucleus	52.83	58.82
CDY04517	Canola	plastid	52.74	58.41
Bra011993.1-P	Field mustard	plastid	52.83	57.97
VIT_06s0061g01040.t01	Wine grape	mitochondrion, nucleus	55.85	57.36
Zm00001d036886_P001	Maize	plastid	12.17	57.08
AT2G27880.1	Thale cress	cytosol, nucleus, plastid	52.83	56.17
KRH25139	Soybean	plastid	50.28	55.46
TraesCS4B01G024000.1	Wheat	nucleus	53.02	54.88
VIT_08s0007g04360.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	43.87	54.64
KRH30536	Soybean	plastid	45.85	54.61
TraesCS7B01G256500.1	Wheat	cytosol	48.4	53.66
PGSC0003DMT400018363	Potato	cytosol, nucleus, plastid	50.66	52.39
Solyc06g074730.2.1	Tomato	nucleus	49.62	52.03
TraesCS6B01G466700.1	Wheat	nucleus	49.34	51.63
TraesCS6B01G206700.1	Wheat	plastid	45.94	51.37
TraesCS2B01G421000.2	Wheat	nucleus	53.11	51.09
TraesCS7B01G482100.1	Wheat	nucleus	49.06	50.39
TraesCS3B01G135800.1	Wheat	cytosol	39.53	49.82
TraesCS6B01G270900.1	Wheat	nucleus	50.94	49.77
TraesCS5B01G116900.5	Wheat	cytosol, mitochondrion, nucleus, plastid	37.45	46.76
Zm00001d039440_P001	Maize	cytosol	9.34	40.57
TraesCS7B01G437900.1	Wheat	cytosol	27.08	35.56
TraesCS7B01G437700.1	Wheat	nucleus	28.87	34.81
TraesCS5B01G162300.1	Wheat	mitochondrion	29.43	34.74
TraesCS1B01G480100.1	Wheat	nucleus	29.43	33.66
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	29.72	33.37
TraesCS7B01G450300.1	Wheat	nucleus	28.87	33.3
TraesCS2B01G434000.1	Wheat	nucleus	31.32	31.62
TraesCS7B01G450200.2	Wheat	nucleus	27.45	31.43
TraesCS2B01G439000.2	Wheat	nucleus, unclear	30.75	31.17
TraesCS7B01G373400.1	Wheat	nucleus	22.74	30.66
Zm00001d035554_P001	Maize	plastid	14.34	30.22
TraesCS2B01G438600.1	Wheat	cytosol, nucleus, plastid	21.6	28.52
TraesCS2B01G438200.1	Wheat	nucleus	25.47	25.26
Os03t0789500-01	Rice	cytosol	0.75	3.52

Protein Annotations

Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	MapMan:35.1	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170
PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487	PFAM:PF16488	PFscan:PS50821
PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF24	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SMART:SM00949	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS5B01G451400
EnsemblPlants:TraesCS5B01G451400.2	TIGR:cd02846	TIGR:cd04657	SEG:seg	:	:

Description

No Description!

Coordinates

chr5B:-:622739049..622747343

Molecular Weight (calculated)

117219.0 Da

IEP (calculated)

9.564

GRAVY (calculated)

-0.401

Length

1060 amino acids

Sequence
(BLAST)

0001: MAYRGGGGRG GGRGDQQYGG GRGAPAGGGR GGGRGPTGFV WPPPGAPSAP RPAGPAQYAP AVAVYHNPNA TGPHQGAYQH GVVVRNPAPA PYAAVRAPSP
0101: TPVTIRAPSP TPATIRAPAP TPSPAARPFQ PARVSAPAPA PPTPAAVAKE LEQKLFVTET ALAPPAAAAA AAVAATQPEE EKAPEVDLAP VSKKGLAHPA
0201: RPGAGTVGKK VMIRANHFLV NVADNNLFHY DVSINPESKS RAVNREVLSE LIKLHGKTSL GGKLPAYDGR KSLYTAGSLP FESEEFSVTL VDPEKKDKEK
0301: AEREYKITIR IAGRTDLYHL QQFLKGRQRD MPQETIQVLD VVLRESPSWN YVTVSRSFFS TTFGHRGDIG EGLECWRGYY QSLRPTQMGL SLNIDISATS
0401: FFKPVTVVQF VLEFLNLRDT SRPLTDRDRV KIKKALRGVR VETNHQEDQI RRYKITGITP VPMSQLIFPV DERGTRMSVV HYFMQRYNYN LQYTSWPCLQ
0501: SGSDARPVYL PMEVCKIVEG QRYSKKLNDK QVTNILRATC QRPQQREQSI REMVLHNKYA EDKFAQEFGI NVCSDLVSVP ARVLPPPMLR YHDSGKEKTC
0601: APSVGQWNMI NKKMINGGII DNWACVSFSR MRPEEVHRFC CDLIQMCNMT GMSVNPRPLV DNRSASPNHI ENALRDVYRR TTEMLSKQGH EKQLQLLIVI
0701: LPEVSGSYGK IKKICETDLG IVSQCCLPRH AARPNKQYME NVALKINVKV GGRNTVLERA FVRNGIPFVS EVPTIIFGAD VTHPPPGEDS ASSIAAVVAS
0801: MDWPEITKYR GLVSAQPHRQ EIIEDLFSVS KDPQRGNVNG GMIRELLIAF RRKTGRRPER ILFYRDGVSE GQFSHVLLHE MDAIRKACAS LEEGYMPPVT
0901: FVVVQKRHHT RLFPEVHGRR DMTDKSGNIL PGTVVDLMIC HPTEFDFYLC SHAGIQGTSR PTHYHVLYDE NHFTADALQS LTNNLCYTYA RCTRAVSVVP
1001: PAYYAHLAAF RARYYVEGDS SDGGSTPGSS GQAAIAREGP VEVRQLPKIK DNVKDVMFYC

Best Arabidopsis Sequence Match ( AT2G27880.1 )
(BLAST)

001: MSNRGGGGHG GASRGRGGGR RSDQRQDQSS GQVAWPGLQQ SYGGRGGSVS AGRGRGNVGR GENTGDLTAT QVPVASAVSG GRGRGNIGDP TFSVASSSKT
101: VSVASSSKEE SKNTEVSETM SNLQITSTET KPEMTSLPPA SSKAVTFPVR PGRGTLGKKV MVRANHFLVQ VADRDLYHYD VSINPEVISK TVNRNVMKLL
201: VKNYKDSHLG GKSPAYDGRK SLYTAGPLPF DSKEFVVNLA EKRADGSSGK DRPFKVAVKN VTSTDLYQLQ QFLDRKQREA PYDTIQVLDV VLRDKPSNDY
301: VSVGRSFFHT SLGKDARDGR GELGDGIEYW RGYFQSLRLT QMGLSLNIDV SARSFYEPIV VTDFISKFLN IRDLNRPLRD SDRLKVKKVL RTLKVKLLHW
401: NGTKSAKISG ISSLPIRELR FTLEDKSEKT VVQYFAEKYN YRVKYQALPA IQTGSDTRPV YLPMELCQID EGQRYTKRLN EKQVTALLKA TCQRPPDREN
501: SIKNLVVKNN YNDDLSKEFG MSVTTQLASI EARVLPPPML KYHDSGKEKM VNPRLGQWNM IDKKMVNGAK VTSWTCVSFS TRIDRGLPQE FCKQLIGMCV
601: SKGMEFKPQP AIPFISCPPE HIEEALLDIH KRAPGLQLLI VILPDVTGSY GKIKRICETE LGIVSQCCQP RQVNKLNKQY MENVALKINV KTGGRNTVLN
701: DAIRRNIPLI TDRPTIIMGA DVTHPQPGED SSPSIAAVVA SMDWPEINKY RGLVSAQAHR EEIIQDLYKL VQDPQRGLVH SGLIREHFIA FRRATGQIPQ
801: RIIFYRDGVS EGQFSQVLLH EMTAIRKACN SLQENYVPRV TFVIVQKRHH TRLFPEQHGN RDMTDKSGNI QPGTVVDTKI CHPNEFDFYL NSHAGIQGTS
901: RPAHYHVLLD ENGFTADQLQ MLTNNLCYTY ARCTKSVSIV PPAYYAHLAA FRARYYMESE MSDGGSSRSR SSTTGVGQVI SQLPAIKDNV KEVMFYC

Arabidopsis Description

AGO5Protein argonaute 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJK3]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.