Factsheet for TraesCS5B01G454200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0789466-00	Rice	cytosol, mitochondrion, nucleus	54.07	79.87
TraesCS5B01G452500.1	Wheat	nucleus	93.04	68.86
TraesCS3B01G287600.1	Wheat	nucleus	89.63	66.78
EER90726	Sorghum	cytosol	81.63	64.9
TraesCS5B01G455700.1	Wheat	cytosol, mitochondrion, plastid	89.93	61.62
TraesCS5B01G451400.2	Wheat	plastid	93.93	59.81
Os03t0800200-01	Rice	plasma membrane	84.74	54.06
TraesCS5D01G192700.2	Wheat	nucleus	73.33	52.49
Zm00001d013063_P001	Maize	nucleus	74.96	50.1
TraesCS5B01G458100.1	Wheat	cytosol	69.33	49.26
Zm00001d009158_P003	Maize	golgi	30.22	46.68
TraesCS5B01G468000.1	Wheat	plastid	58.81	45.48
Zm00001d032611_P002	Maize	vacuole	24.44	44.35
TraesCS2B01G195200.2	Wheat	nucleus	61.48	41.17
KRH30536	Soybean	plastid	53.93	40.9
VIT_08s0007g04360.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	50.52	40.07
TraesCS4B01G026600.1	Wheat	cytosol	28.15	39.18
CDX71410	Canola	nucleus	55.11	39.08
CDY04517	Canola	plastid	54.96	38.77
Bra011993.1-P	Field mustard	plastid	55.11	38.51
KRH25139	Soybean	plastid	54.22	38.09
VIT_06s0061g01040.t01	Wine grape	mitochondrion, nucleus	58.22	38.08
TraesCS7B01G256500.1	Wheat	cytosol	53.19	37.55
TraesCS4B01G024000.1	Wheat	nucleus	56.44	37.21
AT2G27880.1	Thale cress	cytosol, nucleus, plastid	54.81	37.11
TraesCS6B01G466700.1	Wheat	nucleus	54.37	36.23
PGSC0003DMT400018363	Potato	cytosol, nucleus, plastid	54.07	35.61
TraesCS3B01G135800.1	Wheat	cytosol	44.0	35.32
TraesCS6B01G206700.1	Wheat	plastid	49.48	35.23
Solyc06g074730.2.1	Tomato	nucleus	52.15	34.82
TraesCS7B01G482100.1	Wheat	nucleus	52.44	34.3
TraesCS2B01G421000.2	Wheat	nucleus	55.56	34.03
TraesCS6B01G270900.1	Wheat	nucleus	53.48	33.27
TraesCS5B01G116900.5	Wheat	cytosol, mitochondrion, nucleus, plastid	41.19	32.74
TraesCS7B01G373400.1	Wheat	nucleus	30.67	26.34
TraesCS7B01G437900.1	Wheat	cytosol	30.81	25.77
TraesCS5B01G162300.1	Wheat	mitochondrion	33.33	25.06
TraesCS7B01G437700.1	Wheat	nucleus	31.7	24.35
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	32.74	23.41
TraesCS1B01G480100.1	Wheat	nucleus	32.0	23.3
TraesCS7B01G450300.1	Wheat	nucleus	31.11	22.85
TraesCS7B01G450200.2	Wheat	nucleus	29.93	21.81
TraesCS2B01G438600.1	Wheat	cytosol, nucleus, plastid	24.3	20.42
TraesCS2B01G434000.1	Wheat	nucleus	30.22	19.43
TraesCS2B01G439000.2	Wheat	nucleus, unclear	29.63	19.12
Zm00001d036886_P001	Maize	plastid	5.93	17.7
TraesCS2B01G438200.1	Wheat	nucleus	25.78	16.28
Zm00001d035554_P001	Maize	plastid	9.04	12.13
Zm00001d039440_P001	Maize	cytosol	3.26	9.02
TraesCS3B01G027100.1	Wheat	cytosol	1.63	7.19
Os03t0789500-01	Rice	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	MapMan:35.1	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170
PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487	PFAM:PF16488	PFscan:PS50821
PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF24	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SMART:SM00949	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS5B01G454200
EnsemblPlants:TraesCS5B01G454200.1	TIGR:cd02846	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:626859796..626864234

Molecular Weight (calculated)

76990.1 Da

IEP (calculated)

9.575

GRAVY (calculated)

-0.404

Length

675 amino acids

Sequence
(BLAST)

001: MVSINPESKS RAVNREVLSE LIKLHGKTSL GGKLPAYDGR KSLYTAGSLP FESEEFSVTL VDPEKKDKEK AEREYKITIR IAGRTDLYHL QQFLKGRQRD
101: MPQETIQVLD VVLRESPSWN YVTVSRSFFS TTFGHRGDIG EGLECWRGYY QSLRPTQMGL SLNIDISATS FFKPVTVVQF VLEFLNLRDA SRPLTDRDRI
201: KIKKALRGVR VETNHQEDQI RRYKITGITP VPMSQLIFPV DERGTRMSVV HYFMQRYNYN LQYTSWPCLQ SGSDARPVYL PMEACKIVEG QRYSKKLNDK
301: QVANILRATC QRPQQREQSI REMVLHNKYA EDKFAQEFGI NVCSDLVSVP ARVLPPPMLR YHDSGKEKTC APSVGQWNMI NKKMINGGII DNWACVSFSR
401: MRPEEVHRFC CDLIQMCNMT GMSVNSRPLV DNRSASPNHI ENALRDVYRR TTEMLSKQGH EKQLQLLIVI LPEISGSYGK IKKVCETDLG IVSQCYLPRY
501: AARPNKQYLE NVALKINVKV GLPPSIEKAF ARFGVPAVTK VPTIIFGADV THPPPGEDST SSIAVVVASM DWPEITKYRG LVSAQPHRQE IIEDLFSVSK
601: DPQRGNVNGG MIRELLIAFR WKTGRRPERI LFYRDSVSEG QLSTVRFHEM NAIRKACAAL EEGYMPQIIY IALDK

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.