Factsheet for TraesCS5D01G192700.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G454200.1	Wheat	cytosol	52.49	73.33
TraesCS5D01G454600.1	Wheat	cytosol	45.71	58.16
Os03t0789466-00	Rice	cytosol, mitochondrion, nucleus	27.15	56.02
EER90726	Sorghum	cytosol	50.37	55.95
TraesCS5D01G454200.1	Wheat	cytosol, nucleus, plastid	55.57	49.76
Os03t0800200-01	Rice	plasma membrane	52.07	46.41
Zm00001d013063_P001	Maize	nucleus	45.81	42.77
Zm00001d032611_P002	Maize	vacuole	16.44	41.67
TraesCS4D01G024100.1	Wheat	plastid	36.16	39.79
KRH30536	Soybean	plastid	33.72	35.73
TraesCS2D01G176500.1	Wheat	golgi, unclear	38.81	35.29
VIT_08s0007g04360.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	31.6	35.02
Zm00001d009158_P003	Maize	golgi	16.12	34.78
CDX71410	Canola	nucleus	35.1	34.77
CDY04517	Canola	plastid	35.21	34.69
Bra011993.1-P	Field mustard	plastid	35.31	34.47
VIT_06s0061g01040.t01	Wine grape	mitochondrion, nucleus	36.8	33.62
TraesCS7D01G351700.1	Wheat	cytosol	33.83	33.51
KRH25139	Soybean	plastid	33.93	33.3
AT2G27880.1	Thale cress	cytosol, nucleus, plastid	34.68	32.8
TraesCS7D01G553000.1	Wheat	cytosol	34.99	32.01
TraesCS4D01G024300.1	Wheat	cytosol	18.66	32.0
TraesCS7D01G061600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	17.82	31.88
TraesCS6D01G166300.1	Wheat	plastid	31.92	31.65
TraesCS3D01G118600.1	Wheat	cytosol, mitochondrion, nucleus	27.78	31.19
TraesCS6D01G403900.1	Wheat	plastid	34.57	30.9
TraesCS2D01G400200.1	Wheat	nucleus	35.95	30.85
PGSC0003DMT400018363	Potato	cytosol, nucleus, plastid	33.4	30.73
Solyc06g074730.2.1	Tomato	nucleus	32.56	30.37
TraesCS6D01G235900.1	Wheat	endoplasmic reticulum	34.78	29.47
TraesCS7D01G553200.1	Wheat	nucleus, plastid	14.42	28.39
TraesCS7D01G036100.3	Wheat	endoplasmic reticulum, golgi	35.84	27.93
TraesCS1D01G151300.3	Wheat	plastid	25.13	27.92
TraesCS7D01G552900.1	Wheat	mitochondrion	13.26	27.47
Zm00001d036886_P001	Maize	plastid	6.04	25.22
TraesCS5D01G169500.1	Wheat	cytosol	20.89	22.34
TraesCS7D01G520400.1	Wheat	nucleus	19.94	20.68
TraesCS1D01G453600.1	Wheat	nucleus	19.19	19.63
TraesCS3D01G191600.5	Wheat	nucleus	19.72	18.56
Zm00001d039440_P001	Maize	cytosol	4.56	17.62
Zm00001d035554_P001	Maize	plastid	9.33	17.5
TraesCS7D01G458800.1	Wheat	nucleus	8.38	16.95
TraesCS2D01G417000.1	Wheat	nucleus	18.56	16.7
TraesCS7D01G458900.1	Wheat	mitochondrion	3.18	16.48
TraesCS2D01G412100.1	Wheat	plastid	19.3	16.29
TraesCS2D01G416500.1	Wheat	nucleus	16.44	14.66
Os03t0789500-01	Rice	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.170.260.10	Gene3D:3.10.20.90	Gene3D:3.30.420.10	MapMan:35.1	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626
InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF00240
PFAM:PF02170	PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16488	PFscan:PS50053
PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF24	InterPro:Piwi	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	SMART:SM00949	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098
SUPFAM:SSF54236	EnsemblPlantsGene:TraesCS5D01G192700	EnsemblPlants:TraesCS5D01G192700.2	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	TIGR:cd00196
TIGR:cd02846	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:296871764..296877359

Molecular Weight (calculated)

107317.0 Da

IEP (calculated)

10.166

GRAVY (calculated)

-0.376

Length

943 amino acids

Sequence
(BLAST)

001: MVSINPESKS RAVNREVLSE LIKLHGKTSL GGKLPAYDGR KSLYTAGSLP FESEEFSVTL VDPEKKDKEK AEREYKITIL IAGRTDLYHL QQFLKGRQRD
101: MPQETIQVLD VVLRESPSWN YVTVSRSFFS TTFGHRGDIG EGLECWRGYY QSLCPTQMGL SLNIDISATS FFKPVTVVQF VLEFLNLRDA SRPLTDRDRV
201: KIKKALRGVR VETNHQEDQI RRYKITGITP VPMSQLTFPV DERGTRMSVV QYFMQRYKYN LQYTSWPCLQ SGSDARPVYL PMEACKIVEG QRYSKKLNDK
301: QVTNILRATC QRPQQREQSI REMVLHNKYA EDKFAQEFGI NVCSDLVSVP ARVLPPPMLR YHDSGKEKTC VPSVGQWNMI NKVGRPPSIE KAFTRFGVPA
401: LKNIPTIIFG ADVTHPPPGE DSASSVAAVV ASMDWPEITK YSGLVSAQPH RQEIIENLFS VTKDPQRGNV NGGMIRELLI AFRRKTGRRP ERILFYRDGV
501: SEGQFSHVLL HEMDAIRKAC ASLEEGYQPK VNFVPVEKKH YTRLLSGDHG RHDMTDKSGN KLSGLVTAHE NNGQHIPIDI SIVSQAGRLV VQFPFNSTCY
601: SLKTAIEKKL NVSINSCSLY LARKPIDYGK TLAYYGLRDK SVLRMEAKLL GGASIGVPQT VAQTFSDQTL KEYSADSTKF FRTVSVRDKD RPGRRRRITV
701: FNKNGNILGL SVVDQLKKAI KNKKSWNGQL KKKDFRVVDG RAVIIKEPIY GINAVNLPKD CKKILKILKK IFKTEINGAD APFLRWNPFL TDLLTVLESA
801: AFSDLYWLVP FIKTNFAFKT PIQRGNASYN IIRYYEGLNG LDKFVFEAIV NGVPVPTDWL SLKLQTHYFF RKTIQYALNK YGFTYSLTSF GCFKFQRNKT
901: THDGIVSPWH LSDHEISMLL RSFVAEVVRE LLKQRVPIKK ALQ

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.