Factsheet for TraesCS3D01G118600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G135800.1	Wheat	cytosol	96.67	96.55
TraesCS3A01G116800.1	Wheat	nucleus	96.19	76.44
HORVU3Hr1G021290.1	Barley	cytosol, nucleus	86.19	68.89
Os07t0471300-01	Rice	nucleus	50.95	57.6
Zm00001d021345_P001	Maize	nucleus	62.14	56.19
Zm00001d006351_P001	Maize	nucleus	66.19	52.8
EER97198	Sorghum	nucleus	65.48	52.68
TraesCS7D01G552900.1	Wheat	mitochondrion	28.45	52.53
EER91156	Sorghum	nucleus	56.43	50.7
TraesCS7D01G553200.1	Wheat	nucleus, plastid	28.69	50.31
TraesCS4D01G024100.1	Wheat	plastid	47.86	46.91
Zm00001d033206_P001	Maize	cytosol	53.93	46.89
TraesCS7D01G351700.1	Wheat	cytosol	53.1	46.85
TraesCS4D01G024300.1	Wheat	cytosol	30.36	46.36
TraesCS6D01G166300.1	Wheat	plastid	50.0	44.16
TraesCS7D01G553000.1	Wheat	cytosol	54.05	44.03
TraesCS5D01G454600.1	Wheat	cytosol	37.98	43.05
TraesCS6D01G403900.1	Wheat	plastid	54.05	43.03
TraesCS1D01G151300.3	Wheat	plastid	42.98	42.52
TraesCS2D01G400200.1	Wheat	nucleus	55.0	42.04
TraesCS6D01G235900.1	Wheat	endoplasmic reticulum	53.81	40.61
TraesCS5D01G454200.1	Wheat	cytosol, nucleus, plastid	49.76	39.7
TraesCS2D01G176500.1	Wheat	golgi, unclear	48.45	39.25
TraesCS7D01G036100.3	Wheat	endoplasmic reticulum, golgi	54.4	37.77
TraesCS7D01G458800.1	Wheat	nucleus	20.36	36.7
TraesCS7D01G061600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	22.5	35.86
TraesCS5D01G169500.1	Wheat	cytosol	34.52	32.88
TraesCS1D01G453600.1	Wheat	nucleus	34.64	31.56
TraesCS7D01G520400.1	Wheat	nucleus	33.93	31.35
TraesCS3D01G191600.5	Wheat	nucleus	35.36	29.64
TraesCS5D01G192700.2	Wheat	nucleus	31.19	27.78
TraesCS7D01G458900.1	Wheat	mitochondrion	5.95	27.47
TraesCS2D01G412100.1	Wheat	plastid	35.12	26.41
TraesCS2D01G417000.1	Wheat	nucleus	32.02	25.67
OQU89939	Sorghum	endoplasmic reticulum, plasma membrane	28.21	23.54
TraesCS2D01G416500.1	Wheat	nucleus	26.9	21.38

Protein Annotations

Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	MapMan:35.1	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170
PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487	PFAM:PF16488	PFscan:PS50821
PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF103	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SMART:SM00949	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS3D01G118600
EnsemblPlants:TraesCS3D01G118600.1	TIGR:cd02846	TIGR:cd04657	SEG:seg	:	:

Description

No Description!

Coordinates

chr3D:+:73377733..73383361

Molecular Weight (calculated)

94133.5 Da

IEP (calculated)

9.379

GRAVY (calculated)

-0.337

Length

840 amino acids

Sequence
(BLAST)

001: MAMSRAEPMF PGRPGFGRTG QVCMVRANHF FVGLVDKGLH QYDVAMSPEP TITGVFRAVM STLVKEHQST TLGGRLPAYD GRKSLYTAGE LPFKTKEFEV
101: TLPDKNPGPP GQRRERKFKV TIKHATLVSL QQLQMLMSGI PTDIPAQALQ VLDIVLRDIV LNERDDMGFV PVGRSFFSRT IEDPIQLGQG IEGWNGFYQS
201: IRPTQSGLSL NIDMSSTAFV GGGSLIDFIK EILNRKDLSR GFQNEFDYVK IKKALRGLRV EVTHRGQMRR KYRIAGLTKD SARELRFQLS TGETKTVRDY
301: FRETYKLQLR YDFLRCLQVG TEQKPNYLPI EVCNIVPGQR YQKKLDDGQV SKMMSIACQH PAGRETSIRK SVLENKYNSA KRANEFGIEV DSNPTSVQAR
401: VLPAPKLRYH GCASLYPENG AWNMRGKKVV NGAKVGIWAC VNFCNELTED QVCIFCGKLS EMSSTTGVNF NGAKLKIFHA RSDQVEAKLR EVRQQAGNMK
501: IDLVLAILPN KNGSLYGDIK RICETDIGLM SQCCLLKNVE KSSPQFLANV ALKINAKCGG RNSVFADIPV SLPVVWKQPT IIFGADVTHP SALDDTAPSI
601: ASVVASQDWP EVTKYHGDVH AQGHRVELIE ALEGIVKKLL LSFEKQSKQR PKQLIFYRDG VSEGQFRKVL EDEIPLIEKA WKALYNEKPS ITFIVVQKRH
701: HTRLFPSDGK YQDNSGNVMP GTVVDRQICH PTEFDFFLCS HAGIKGTSRP AHYHVLRDDN NFSADDLQSL TNNLCYTYAS CTRSVSTAPP AYYAHKLAFR
801: ARFYLGQVPD MASEISAGSA PPPLMLPEIK DELKSHMFYC

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.