Factsheet for TraesCS7D01G458900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G324800.1
TraesCS1B01G337800.2
TraesCS1D01G325500.1
TraesCS6A01G123800.1
TraesCS6B01G094400.1
TraesCS6B01G151900.1
TraesCS6D01G113900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27040.1	TraesCS6A01G123800.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6B01G094400.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6B01G151900.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS6D01G113900.1	AT2G40030.1	19410546
AT2G27040.1	TraesCS1A01G324800.1	AT5G04290.1	19410546
AT2G27040.1	TraesCS1B01G337800.2	AT5G04290.1	19410546
AT2G27040.1	TraesCS1D01G325500.1	AT5G04290.1	19410546

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G107770.1	Barley	nucleus	67.03	20.4
TraesCS7B01G373400.1	Wheat	nucleus	82.97	19.21
TraesCS1D01G453600.1	Wheat	nucleus	54.95	10.85
TraesCS7D01G520400.1	Wheat	nucleus	52.75	10.56
VIT_06s0009g01200.t01	Wine grape	nucleus	52.75	10.51
GSMUA_Achr9P05150_001	Banana	nucleus	51.65	10.27
Solyc01g008960.2.1	Tomato	nucleus	51.1	10.23
PGSC0003DMT400058471	Potato	nucleus	51.1	10.23
Solyc01g096750.1.1	Tomato	nucleus	48.35	9.99
Solyc06g073540.2.1	Tomato	nucleus	50.0	9.97
PGSC0003DMT400069459	Potato	nucleus	50.0	9.97
VIT_08s0040g00070.t01	Wine grape	nucleus	50.0	9.91
VIT_13s0175g00140.t01	Wine grape	nucleus	47.8	9.83
EES00570	Sorghum	nucleus	48.35	9.8
Bra034318.1-P	Field mustard	nucleus	48.9	9.65
CDY48192	Canola	nucleus	48.9	9.65
Solyc06g073530.1.1	Tomato	nucleus	47.8	9.62
TraesCS3D01G191600.5	Wheat	nucleus	52.75	9.58
CDX77061	Canola	nucleus	48.35	9.54
KRG89867	Soybean	nucleus	49.45	9.5
CDY04475	Canola	nucleus	47.8	9.43
AT2G27040.1	Thale cress	nucleus	47.8	9.42
Bra020152.1-P	Field mustard	nucleus	46.7	9.38
KRH73469	Soybean	nucleus	46.7	9.38
CDY09103	Canola	nucleus	46.7	9.38
KRH14678	Soybean	nucleus	46.15	9.27
CDY56413	Canola	nucleus	46.7	9.21
TraesCS5D01G169500.1	Wheat	cytosol	43.41	8.96
AT5G21150.1	Thale cress	nucleus	43.96	8.93
Bra002361.1-P	Field mustard	nucleus	43.41	8.67
CDY16587	Canola	nucleus	41.76	8.62
CDX92405	Canola	nucleus	42.86	8.52
CDX92406	Canola	nucleus	41.76	8.41
CDY16595	Canola	nucleus	42.31	8.37
CDY59516	Canola	nucleus	41.21	8.28
AT5G21030.2	Thale cress	cytosol	38.46	8.2
Bra002360.1-P	Field mustard	nucleus	41.21	8.06
Solyc03g111760.2.1	Tomato	mitochondrion	33.52	6.66
KRH56276	Soybean	cytosol	27.47	6.02
TraesCS3D01G118600.1	Wheat	cytosol, mitochondrion, nucleus	27.47	5.95
TraesCS4D01G024100.1	Wheat	plastid	26.37	5.6
TraesCS6D01G166300.1	Wheat	plastid	27.47	5.26
TraesCS1D01G151300.3	Wheat	plastid	24.18	5.18
TraesCS7D01G553000.1	Wheat	cytosol	28.02	4.95
TraesCS6D01G403900.1	Wheat	plastid	28.02	4.83
TraesCS2D01G400200.1	Wheat	nucleus	28.57	4.73
TraesCS7D01G351700.1	Wheat	cytosol	24.18	4.62
TraesCS6D01G235900.1	Wheat	endoplasmic reticulum	28.02	4.58
TraesCS2D01G176500.1	Wheat	golgi, unclear	25.82	4.53
CDY62055	Canola	nucleus	14.29	4.51
Bra002349.1-P	Field mustard	nucleus	41.76	4.47
TraesCS7D01G036100.3	Wheat	endoplasmic reticulum, golgi	28.02	4.21
TraesCS5D01G454200.1	Wheat	cytosol, nucleus, plastid	22.53	3.89
TraesCS2D01G412100.1	Wheat	plastid	20.88	3.4
TraesCS2D01G417000.1	Wheat	nucleus	18.68	3.24
TraesCS5D01G192700.2	Wheat	nucleus	16.48	3.18
TraesCS2D01G416500.1	Wheat	nucleus	13.74	2.37
TraesCS5D01G454600.1	Wheat	cytosol	4.95	1.21
Os01t0275200-00	Rice	golgi, peroxisome, plastid	1.65	0.64
CDX92417	Canola	nucleus	0.55	0.16
CDY72062	Canola	plastid	0.0	0.0
TraesCS4D01G024300.1	Wheat	cytosol	0.0	0.0
TraesCS7D01G061600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	0.0	0.0
TraesCS7D01G458800.1	Wheat	nucleus	0.0	0.0
TraesCS7D01G552900.1	Wheat	mitochondrion	0.0	0.0
TraesCS7D01G553200.1	Wheat	nucleus, plastid	0.0	0.0
PGSC0003DMT400039204	Potato	cytosol	0.0	0.0
PGSC0003DMT400070806	Potato	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS7D01G458900.1	EnsemblPlantsGene:TraesCS7D01G458900	InterPro:Argonaute_N	PANTHER:PTHR22891	PANTHER:PTHR22891:SF56	PFAM:PF16486
SEG:seg	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr7D:-:576339909..576340810

Molecular Weight (calculated)

20267.4 Da

IEP (calculated)

10.273

GRAVY (calculated)

-0.421

Length

182 amino acids

Sequence
(BLAST)

001: MLPIRRPPEP VTRGRRITLL TNHFKVSGKP THEFFYHYHV DLKYKDGHPV KGEGMRRKVM RQLHETYASF LADKQFAYDG ETGLCTAGPL PFTTNVFDDV
101: VVDASSGRIA ATSGSHGGDG SPGPSDSKRM KPAVDSKIFK VDITLAAKVR MNISSQDALR VLDIILRQHS AKQNCLLVRQ SF

Best Arabidopsis Sequence Match ( AT2G27040.1 )
(BLAST)

001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC

Arabidopsis Description

AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.