Factsheet for VIT_13s0175g00140.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070806	Potato	nucleus	22.15	67.12
VIT_06s0009g01200.t01	Wine grape	nucleus	65.99	63.97
Solyc01g096750.1.1	Tomato	nucleus	63.5	63.79
Os01t0275600-01	Rice	nucleus	62.71	61.39
GSMUA_Achr9P05150_001	Banana	nucleus	63.28	61.2
Zm00001d040429_P012	Maize	nucleus	61.92	60.82
VIT_08s0040g00070.t01	Wine grape	nucleus	62.94	60.68
TraesCS3A01G188400.1	Wheat	nucleus	62.6	60.48
Os04t0151800-02	Rice	nucleus	61.92	60.15
Zm00001d008249_P012	Maize	nucleus	60.79	59.78
OQU86696	Sorghum	nucleus	60.79	59.78
HORVU3Hr1G038830.1	Barley	nucleus	62.26	59.76
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	62.6	58.69
EES18816	Sorghum	nucleus	60.0	58.42
TraesCS7A01G533100.1	Wheat	cytosol	57.97	56.94
Zm00001d039214_P025	Maize	nucleus	59.44	56.93
TraesCS7D01G458800.1	Wheat	nucleus	29.94	56.87
TraesCS7D01G520400.1	Wheat	nucleus	57.85	56.33
TraesCS1D01G453600.1	Wheat	nucleus	58.53	56.18
TraesCS1A01G445500.1	Wheat	golgi, unclear	58.53	56.0
TraesCS1B01G480100.1	Wheat	nucleus	58.42	55.77
VIT_12s0059g01430.t01	Wine grape	nucleus	57.74	55.54
TraesCS3D01G191600.5	Wheat	nucleus	62.49	55.19
TraesCS7B01G450300.1	Wheat	nucleus	55.82	53.75
TraesCS7A01G521000.1	Wheat	nucleus	49.04	53.51
TraesCS7B01G437900.1	Wheat	cytosol	48.7	53.41
TraesCS7B01G450200.2	Wheat	nucleus	55.37	52.92
TraesCS7B01G437700.1	Wheat	nucleus	52.43	52.79
EES00570	Sorghum	nucleus	52.2	51.45
KRH56276	Soybean	cytosol	48.02	51.14
Os01t0275200-00	Rice	golgi, peroxisome, plastid	26.89	50.96
TraesCS7B01G373400.1	Wheat	nucleus	43.05	48.47
TraesCS7D01G458900.1	Wheat	mitochondrion	9.83	47.8
HORVU7Hr1G107770.1	Barley	nucleus	29.38	43.48
VIT_11s0016g04620.t01	Wine grape	cytosol	33.11	32.38
VIT_08s0007g04360.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	30.51	31.73
VIT_19s0014g01840.t01	Wine grape	cytosol, nucleus, plastid	27.68	31.53
VIT_05s0020g04190.t01	Wine grape	nucleus	30.28	30.52
VIT_06s0061g01040.t01	Wine grape	mitochondrion, nucleus	33.9	29.07
VIT_17s0053g00680.t01	Wine grape	nucleus	35.25	28.76
VIT_03s0038g00830.t01	Wine grape	nucleus	29.38	25.97
VIT_10s0042g01180.t01	Wine grape	nucleus, plastid	27.34	25.53
VIT_10s0042g01200.t01	Wine grape	nucleus	28.59	25.45
VIT_01s0113g00500.t01	Wine grape	nucleus	28.81	25.42
VIT_10s0042g01150.t01	Wine grape	nucleus	27.68	25.03

Protein Annotations

EntrezGene:100268121	wikigene:100268121	MapMan:12.5.1.13	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300
InterPro:ArgoL1	InterPro:ArgoL2	InterPro:Argonaute_N	ProteinID:CCB62778	ProteinID:CCB62778.1	ncoils:Coil
UniProt:F6I760	EMBL:FN596766	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0031047	InterPro:IPR003100	InterPro:IPR003165
InterPro:IPR036397	EntrezGene:LOC100268121	wikigene:LOC100268121	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170
PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16488	PFscan:PS50821	PFscan:PS50822
PANTHER:PTHR22891	PANTHER:PTHR22891:SF20	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00950
SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	UniParc:UPI0002108EE1	ArrayExpress:VIT_13s0175g00140	EnsemblPlantsGene:VIT_13s0175g00140
EnsemblPlants:VIT_13s0175g00140.t01	RefSeq:XP_002264978	RefSeq:XP_002264978.1	:	:	:

Description

No Description!

Coordinates

chr13:-:15074590..15079381

Molecular Weight (calculated)

99401.7 Da

IEP (calculated)

9.692

GRAVY (calculated)

-0.370

Length

885 amino acids

Sequence
(BLAST)

001: MESQKPPNAE PAKRSSSIPN RLPMARRGLG RTGETIQLVT NHFKVSMHSN ANTGAHFYQY NVSLAHEDGH PADAKDIGRK VMDKVHETYH TEMAGMSFAY
101: DGEKSLFTIG SLPSKKLRFT VVLEDASSNR YKCTLNIDSP DDGSDRKRSR RPYHSKTFNV EISFAAKFPM DSIVRASYGQ PSKHLQDAAR VLDIILRQHA
201: AKKGCLVVRQ SFFDNLPRNF TPLGGGVLGC RGFNSSFRAT QGGLFLNMDV STTLVIQPDP VRDFLVSNQN VKDMYHIDWS KAKRMLKNLR VKTLHSNAEW
301: KISGLSERTC RNQTFLMKQR NEGPDGDEVR SVEVTVYDYF VKHRKISLQY SGDFPCINVG RSKHPVYIPL ELCTLVSLQR YTKPLSTQQR SSLVEKSRQK
401: PQERMRALKS NKYDANPMLR SSGISISTQF TQVEGRILPT PSLKSGNGQD LSPRNGRWNF NNKELAQPTK IDPWLIASFS SRCNMKTLIQ DLIKCAKMKG
501: ISMGYPAEIF TENPQYMRQP APVRVDKMIG TMMSQFRRLP QFILCILPQK KNCDIYGPWK RQCLSGCGVP IQCIAPSTPV VNDQYLTNVL LKINAKLGGL
601: NSLLTMGYCP SLHLISTIPT LILGMDVSHG SPGRPDVPSI AAVVSSRHWP SISQYRATVR TQSPKLEMID SLFEPLPNSK DSGIIRGTLL DFYKTSAKRK
701: PEHIIIFRDG VGESQFNQVL NIELEQIIEA CKLLDEQWHP KFMVIIAQKN HHIRFFQNGS PSNVPPGTIV DNTICHPRNN DFYLCAHAGM IGTSRPTHYH
801: VLLDELGFSA DDLQQLVHSL CYVYQRSTTA VSLVAPVCYA HLAAAQVAQF IKFEDLPESS SGHAAAPVPQ LPSFHEKVAD TMFFC

Best Arabidopsis Sequence Match ( AT2G27040.2 )
(BLAST)

001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC

Arabidopsis Description

AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.