Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G27040.1 | OQU84386 | AT2G40030.1 | 19410546 |
| AT2G27040.1 | OQU78267 | AT5G04290.1 | 19410546 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400070806 | Potato | nucleus | 21.6 | 66.44 |
| TraesCS7D01G458800.1 | Wheat | nucleus | 33.63 | 64.81 |
| OQU86696 | Sorghum | nucleus | 61.8 | 61.67 |
| TraesCS7B01G437900.1 | Wheat | cytosol | 53.67 | 59.73 |
| TraesCS7B01G437700.1 | Wheat | nucleus | 58.02 | 59.27 |
| CDY72062 | Canola | plastid | 19.6 | 59.26 |
| TraesCS7A01G521000.1 | Wheat | nucleus | 53.45 | 59.19 |
| PGSC0003DMT400039204 | Potato | cytosol | 9.8 | 58.67 |
| Solyc01g096750.1.1 | Tomato | nucleus | 57.24 | 58.34 |
| EES18816 | Sorghum | nucleus | 58.8 | 58.09 |
| GSMUA_Achr9P05150_001 | Banana | nucleus | 59.13 | 58.03 |
| VIT_06s0009g01200.t01 | Wine grape | nucleus | 58.57 | 57.61 |
| Os01t0275200-00 | Rice | golgi, peroxisome, plastid | 29.51 | 56.75 |
| KRH14678 | Soybean | nucleus | 57.24 | 56.73 |
| PGSC0003DMT400069459 | Potato | nucleus | 57.57 | 56.63 |
| KRH73469 | Soybean | nucleus | 56.9 | 56.4 |
| VIT_08s0040g00070.t01 | Wine grape | nucleus | 57.57 | 56.32 |
| Solyc06g073540.2.1 | Tomato | nucleus | 57.24 | 56.3 |
| CDX92417 | Canola | nucleus | 40.2 | 56.06 |
| Solyc01g008960.2.1 | Tomato | nucleus | 56.57 | 55.89 |
| PGSC0003DMT400058471 | Potato | nucleus | 56.35 | 55.67 |
| AT5G21150.1 | Thale cress | nucleus | 54.01 | 54.13 |
| Solyc06g073530.1.1 | Tomato | nucleus | 54.34 | 53.98 |
| KRG89867 | Soybean | nucleus | 56.35 | 53.43 |
| Bra020152.1-P | Field mustard | nucleus | 53.79 | 53.31 |
| CDY09103 | Canola | nucleus | 53.67 | 53.2 |
| TraesCS7B01G373400.1 | Wheat | nucleus | 46.44 | 53.05 |
| KXG23356 | Sorghum | nucleus | 51.78 | 52.78 |
| CDY04475 | Canola | nucleus | 54.12 | 52.65 |
| AT2G27040.1 | Thale cress | nucleus | 54.12 | 52.6 |
| CDY48192 | Canola | nucleus | 53.9 | 52.49 |
| CDY16587 | Canola | nucleus | 51.56 | 52.49 |
| Bra002361.1-P | Field mustard | nucleus | 53.23 | 52.47 |
| Bra034318.1-P | Field mustard | nucleus | 53.79 | 52.39 |
| CDY56413 | Canola | nucleus | 53.79 | 52.33 |
| CDX77061 | Canola | nucleus | 53.67 | 52.28 |
| VIT_13s0175g00140.t01 | Wine grape | nucleus | 51.45 | 52.2 |
| CDX92405 | Canola | nucleus | 52.23 | 51.26 |
| AT5G21030.2 | Thale cress | cytosol | 48.44 | 50.94 |
| CDX92406 | Canola | nucleus | 51.0 | 50.66 |
| CDY59516 | Canola | nucleus | 50.67 | 50.22 |
| Bra002360.1-P | Field mustard | nucleus | 50.56 | 48.82 |
| TraesCS7D01G458900.1 | Wheat | mitochondrion | 9.8 | 48.35 |
| KRH56276 | Soybean | cytosol | 43.21 | 46.69 |
| HORVU7Hr1G107770.1 | Barley | nucleus | 30.96 | 46.49 |
| CDY16595 | Canola | nucleus | 46.66 | 45.54 |
| Solyc03g111760.2.1 | Tomato | mitochondrion | 43.43 | 42.58 |
| OQU91198 | Sorghum | nucleus | 29.73 | 35.94 |
| EER90726 | Sorghum | cytosol | 33.41 | 35.34 |
| CDY62055 | Canola | nucleus | 21.71 | 33.85 |
| OQU88608 | Sorghum | plastid | 33.18 | 33.83 |
| OQU91197 | Sorghum | plastid | 32.63 | 33.14 |
| KXG20286 | Sorghum | cytosol | 34.86 | 31.91 |
| KXG20965 | Sorghum | nucleus | 35.86 | 30.73 |
| OQU82149 | Sorghum | nucleus | 36.19 | 30.18 |
| EES18841 | Sorghum | nucleus | 35.97 | 29.13 |
| OQU86027 | Sorghum | plastid | 34.52 | 28.08 |
| EER97198 | Sorghum | nucleus | 32.63 | 28.07 |
| Bra002349.1-P | Field mustard | nucleus | 50.89 | 26.87 |
| EER91156 | Sorghum | nucleus | 27.95 | 26.84 |
| EER92100 | Sorghum | cytosol | 28.17 | 24.49 |
| KXG27113 | Sorghum | nucleus | 28.06 | 23.08 |
| EER93271 | Sorghum | cytosol | 21.27 | 18.87 |
| OQU89939 | Sorghum | endoplasmic reticulum, plasma membrane | 19.38 | 17.28 |
Protein Annotations
| MapMan:12.5.1.13 | Gene3D:2.170.260.10 | Gene3D:3.30.420.10 | Gene3D:3.40.50.2300 | InterPro:ArgoL1 | InterPro:ArgoL2 |
| InterPro:Argonaute_N | UniProt:C5XH78 | EnsemblPlants:EES00570 | ProteinID:EES00570 | ProteinID:EES00570.2 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0031047 | InterPro:IPR003100 | InterPro:IPR003165 | InterPro:IPR036397 | InterPro:PAZ_dom | InterPro:PAZ_dom_sf |
| PFAM:PF02170 | PFAM:PF02171 | PFAM:PF08699 | PFAM:PF16486 | PFAM:PF16488 | PFscan:PS50821 |
| PFscan:PS50822 | PANTHER:PTHR22891 | PANTHER:PTHR22891:SF20 | InterPro:Piwi | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf |
| SMART:SM00950 | SMART:SM01163 | EnsemblPlantsGene:SORBI_3003G129200 | SUPFAM:SSF101690 | SUPFAM:SSF53098 | UniParc:UPI00081AC549 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:12067410..12080080
Molecular Weight (calculated)
100528.0 Da
IEP (calculated)
9.311
GRAVY (calculated)
-0.344
Length
898 amino acids
Sequence
(BLAST)
(BLAST)
001: MESSGTKDGL NKAPILQRLP MSRPHGSGTK GNQIRLRTNH FKVSVHRTDV IFYHYNVSVK YEDDKPVESK GVSRTVIEKL QEIYLANVDF VYDGENNLYT
101: MCALQNVEDA FMVVVEDGSS TKSARSRTPG GNGSPEGSDT KRMKRPMTCK TYKVELKSVG EFCKEKKSVG EIPLSAIDKV LRGQESDDCQ EALRVLDIIL
201: RQKSAKQGCL LVRQSFFHSP SEPIKLGGGV VRCPGYHSSF RPTQSGLSLN IDVSTTMIVE PGPVINFILS NQYIKDPSRI DWGKAKHALR NLRIKTTHTN
301: SEFKISSLSE KSCYEQKFLL KQRNGNGPDV VEITVYDYYL KHWDIRLQDS AIFPCLVVGK PKRPTYLPIE LCHLVSLQRY TKALTVLQRS SLVQSSRKNP
401: RERKSDLSSA LQRINYNSDD ILKKCGISIA PEFAQVDGRI LQAPKLKAGD GQDLIARDGR WNFMNRKLFE AKGVHTWAAV NFTTRWKLQD LVRRLIHCGD
501: NKGINISPPQ SIFEERLQGN ESAASRVDAM LEQIRKKIEK PPTFLLCVLP DKNSDIYGPW KRKCLVEYGI VTQCLAPKKL DDQYLTNVLL KINAKLGGLN
601: SLLEIERNQA IPIVSRVPTI IFGMDVSHGA PRSNVPSIAA VVSSLGWPCI SRYRASVCTL SPRVEIIDSL FKPQGNEDRG LISELLFDFY LSSGKQRPEQ
701: VIIFRDGVSE GEFKHVLNIE LAQIIEACKF LNNSGDTWLP KFTVIVAQKN HHTRFFRDGN NDTANVPAGT VVDTGICHPR YYDFYMCAHA GRIGTTRPAH
801: YQVLHDEIGF SPDALQELIH CLSYVYQRST SAISVVAPVY YAHLAAAQVR QFVRFDDASE TASSASGGQA SSASGGQAQP VPELPRLHKN VKSSMFFC
101: MCALQNVEDA FMVVVEDGSS TKSARSRTPG GNGSPEGSDT KRMKRPMTCK TYKVELKSVG EFCKEKKSVG EIPLSAIDKV LRGQESDDCQ EALRVLDIIL
201: RQKSAKQGCL LVRQSFFHSP SEPIKLGGGV VRCPGYHSSF RPTQSGLSLN IDVSTTMIVE PGPVINFILS NQYIKDPSRI DWGKAKHALR NLRIKTTHTN
301: SEFKISSLSE KSCYEQKFLL KQRNGNGPDV VEITVYDYYL KHWDIRLQDS AIFPCLVVGK PKRPTYLPIE LCHLVSLQRY TKALTVLQRS SLVQSSRKNP
401: RERKSDLSSA LQRINYNSDD ILKKCGISIA PEFAQVDGRI LQAPKLKAGD GQDLIARDGR WNFMNRKLFE AKGVHTWAAV NFTTRWKLQD LVRRLIHCGD
501: NKGINISPPQ SIFEERLQGN ESAASRVDAM LEQIRKKIEK PPTFLLCVLP DKNSDIYGPW KRKCLVEYGI VTQCLAPKKL DDQYLTNVLL KINAKLGGLN
601: SLLEIERNQA IPIVSRVPTI IFGMDVSHGA PRSNVPSIAA VVSSLGWPCI SRYRASVCTL SPRVEIIDSL FKPQGNEDRG LISELLFDFY LSSGKQRPEQ
701: VIIFRDGVSE GEFKHVLNIE LAQIIEACKF LNNSGDTWLP KFTVIVAQKN HHTRFFRDGN NDTANVPAGT VVDTGICHPR YYDFYMCAHA GRIGTTRPAH
801: YQVLHDEIGF SPDALQELIH CLSYVYQRST SAISVVAPVY YAHLAAAQVR QFVRFDDASE TASSASGGQA SSASGGQAQP VPELPRLHKN VKSSMFFC
001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC
Arabidopsis Description
AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.