Factsheet for PGSC0003DMT400039204

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070806	Potato	nucleus	60.0	30.82
CDY72062	Canola	plastid	58.0	29.29
TraesCS7D01G458800.1	Wheat	nucleus	53.33	17.17
Solyc03g111760.2.1	Tomato	mitochondrion	97.33	15.94
CDX92417	Canola	nucleus	56.67	13.2
TraesCS7A01G521000.1	Wheat	nucleus	56.67	10.48
Os04t0151800-02	Rice	nucleus	63.33	10.43
EES18816	Sorghum	nucleus	62.67	10.34
TraesCS7A01G533100.1	Wheat	cytosol	62.0	10.32
Os01t0275600-01	Rice	nucleus	62.0	10.29
TraesCS7B01G437900.1	Wheat	cytosol	54.67	10.16
Zm00001d040429_P012	Maize	nucleus	60.67	10.1
GSMUA_Achr9P05150_001	Banana	nucleus	61.33	10.05
TraesCS7B01G450300.1	Wheat	nucleus	61.33	10.01
PGSC0003DMT400069459	Potato	nucleus	60.67	9.97
Zm00001d039214_P025	Maize	nucleus	61.33	9.96
TraesCS1A01G445500.1	Wheat	golgi, unclear	61.33	9.95
TraesCS1B01G480100.1	Wheat	nucleus	61.33	9.92
TraesCS1D01G453600.1	Wheat	nucleus	60.67	9.87
CDY16587	Canola	nucleus	58.0	9.86
EES00570	Sorghum	nucleus	58.67	9.8
PGSC0003DMT400058471	Potato	nucleus	59.33	9.79
Zm00001d008249_P012	Maize	nucleus	58.67	9.78
CDX92406	Canola	nucleus	58.67	9.73
AT5G21150.1	Thale cress	nucleus	58.0	9.71
TraesCS7B01G437700.1	Wheat	nucleus	56.67	9.67
OQU86696	Sorghum	nucleus	58.0	9.67
TraesCS3A01G188400.1	Wheat	nucleus	58.67	9.61
CDY09103	Canola	nucleus	58.0	9.6
HORVU3Hr1G038830.1	Barley	nucleus	58.67	9.54
Bra020152.1-P	Field mustard	nucleus	57.33	9.49
Bra002361.1-P	Field mustard	nucleus	57.33	9.44
CDY59516	Canola	nucleus	56.67	9.38
CDX92405	Canola	nucleus	56.67	9.29
Bra002360.1-P	Field mustard	nucleus	57.33	9.25
TraesCS7D01G520400.1	Wheat	nucleus	56.0	9.24
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	58.0	9.22
TraesCS3D01G191600.5	Wheat	nucleus	58.67	8.78
AT5G21030.2	Thale cress	cytosol	47.33	8.31
TraesCS7B01G450200.2	Wheat	nucleus	50.67	8.21
PGSC0003DMT400054667	Potato	cytosol	38.67	7.95
PGSC0003DMT400053301	Potato	nucleus	46.67	7.61
PGSC0003DMT400077569	Potato	nucleus, plastid	48.0	7.51
PGSC0003DMT400069313	Potato	cytosol	47.33	6.74
PGSC0003DMT400062439	Potato	nucleus	44.67	6.69
PGSC0003DMT400018363	Potato	cytosol, nucleus, plastid	45.33	6.63
PGSC0003DMT400079716	Potato	nucleus	46.67	6.21
CDY16595	Canola	nucleus	38.0	6.2
PGSC0003DMT400054669	Potato	cytosol	40.67	5.8
Bra002349.1-P	Field mustard	nucleus	54.0	4.76
PGSC0003DMT400054661	Potato	nucleus	24.67	3.78
TraesCS7B01G373400.1	Wheat	nucleus	13.33	2.54
HORVU7Hr1G107770.1	Barley	nucleus	4.67	1.17
Os01t0275200-00	Rice	golgi, peroxisome, plastid	2.0	0.64
TraesCS7D01G458900.1	Wheat	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400039204	EnsemblPlantsGene:PGSC0003DMG401015159	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR003165	InterPro:IPR036397	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	PANTHER:PTHR22891
PANTHER:PTHR22891:SF20	PFAM:PF02171	PFscan:PS50822	PGSC:PGSC0003DMG401015159	SMART:SM00950	SUPFAM:SSF53098
UniParc:UPI000294F5D6	UniProt:M1B7X2	MapMan:35.1	:	:	:

Description

Eukaryotic translation initiation factor 2c [Source:PGSC_GENE;Acc:PGSC0003DMG401015159]

Coordinates

chr3:-:51399826..51400958

Molecular Weight (calculated)

17226.0 Da

IEP (calculated)

7.470

GRAVY (calculated)

-0.001

Length

150 amino acids

Sequence
(BLAST)

001: MEEIIKACKF LDEIWSPKFT LIVAQRRHHT KLFQANSSDN IPPGTVVDTK ICHPLYNNNF YICAHAARVG TSRPIHYFVL LDEIGFSSDS VQELVHCLCY
101: VSQRCTSAIY EVAPIRYARL VSAQMLEIMK TEGPELPMLH KNVRDTMFFC

Best Arabidopsis Sequence Match ( AT2G27040.1 )
(BLAST)

001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC

Arabidopsis Description

AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.