Factsheet for PGSC0003DMT400058471

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g008960.2.1	Tomato	nucleus	98.24	98.24
PGSC0003DMT400069459	Potato	nucleus	86.91	86.53
VIT_06s0009g01200.t01	Wine grape	nucleus	83.72	83.35
KRH14678	Soybean	nucleus	78.88	79.14
KRH73469	Soybean	nucleus	78.44	78.7
PGSC0003DMT400070806	Potato	nucleus	23.98	74.66
CDY48192	Canola	nucleus	74.48	73.43
Bra034318.1-P	Field mustard	nucleus	74.37	73.32
CDX77061	Canola	nucleus	74.26	73.21
KRG89867	Soybean	nucleus	76.24	73.18
CDY04475	Canola	nucleus	73.82	72.7
AT2G27040.1	Thale cress	nucleus	73.82	72.62
CDY56413	Canola	nucleus	73.49	72.37
Os01t0275600-01	Rice	nucleus	71.95	72.35
GSMUA_Achr9P05150_001	Banana	nucleus	72.72	72.24
OQU86696	Sorghum	nucleus	70.63	71.33
Zm00001d008249_P012	Maize	nucleus	70.63	71.33
Os04t0151800-02	Rice	nucleus	71.4	71.24
Zm00001d040429_P012	Maize	nucleus	70.41	71.03
TraesCS3A01G188400.1	Wheat	nucleus	69.97	69.43
HORVU3Hr1G038830.1	Barley	nucleus	69.86	68.87
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	69.97	67.37
EES18816	Sorghum	nucleus	67.11	67.11
TraesCS1D01G453600.1	Wheat	nucleus	67.11	66.16
TraesCS1A01G445500.1	Wheat	golgi, unclear	67.22	66.05
TraesCS1B01G480100.1	Wheat	nucleus	67.22	65.91
Zm00001d039214_P025	Maize	nucleus	66.78	65.69
TraesCS7A01G533100.1	Wheat	cytosol	63.81	64.37
TraesCS3D01G191600.5	Wheat	nucleus	69.86	63.37
TraesCS7D01G520400.1	Wheat	nucleus	63.26	63.26
TraesCS7B01G450300.1	Wheat	nucleus	62.49	61.81
TraesCS7D01G458800.1	Wheat	nucleus	31.57	61.59
TraesCS7B01G450200.2	Wheat	nucleus	60.73	59.61
PGSC0003DMT400039204	Potato	cytosol	9.79	59.33
TraesCS7A01G521000.1	Wheat	nucleus	52.26	58.57
TraesCS7B01G437900.1	Wheat	cytosol	51.27	57.74
TraesCS7B01G437700.1	Wheat	nucleus	54.57	56.43
EES00570	Sorghum	nucleus	55.67	56.35
Os01t0275200-00	Rice	golgi, peroxisome, plastid	28.38	55.25
TraesCS7B01G373400.1	Wheat	nucleus	45.76	52.93
TraesCS7D01G458900.1	Wheat	mitochondrion	10.23	51.1
CDY62055	Canola	nucleus	30.25	47.74
HORVU7Hr1G107770.1	Barley	nucleus	31.35	47.66
PGSC0003DMT400077569	Potato	nucleus, plastid	35.2	33.37
PGSC0003DMT400053301	Potato	nucleus	31.9	31.52
PGSC0003DMT400069313	Potato	cytosol	36.19	31.21
PGSC0003DMT400054667	Potato	cytosol	24.75	30.82
PGSC0003DMT400018363	Potato	cytosol, nucleus, plastid	34.54	30.63
PGSC0003DMT400079716	Potato	nucleus	35.53	28.66
PGSC0003DMT400062439	Potato	nucleus	28.82	26.15
PGSC0003DMT400054669	Potato	cytosol	28.6	24.74
PGSC0003DMT400054661	Potato	nucleus	24.86	23.06

Protein Annotations

EntrezGene:102604021	MapMan:12.5.1.13	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	InterPro:ArgoL1
InterPro:ArgoL2	InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0031047	InterPro:IPR003100	InterPro:IPR003165
InterPro:IPR036397	UniProt:M1C2Q1	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170	PFAM:PF02171
PFAM:PF08699	PFAM:PF16486	PFAM:PF16488	EnsemblPlantsGene:PGSC0003DMG400022707	PGSC:PGSC0003DMG400022707	EnsemblPlants:PGSC0003DMT400058471
PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF42	InterPro:Piwi	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	UniParc:UPI0002948F30
RefSeq:XP_006362741.1	SEG:seg	:	:	:	:

Description

AGO4-2 [Source:PGSC_GENE;Acc:PGSC0003DMG400022707]

Coordinates

chr1:+:5375584..5384240

Molecular Weight (calculated)

101754.0 Da

IEP (calculated)

9.113

GRAVY (calculated)

-0.399

Length

909 amino acids

Sequence
(BLAST)

001: MAEEETNGAA AEGLPPPPPV PPDFTPAKTE LEPVKKKILR VPMARRGVGN KGQKIQILTN HFKVNVTNVD GHFFHYSVAL FYEDGRPVDG KGVGRKVLDR
101: VHETYDTELA GKEFAYDGEK SLFTIGALPR NKMEFTVVLD DVTSNRNNGN SSPGGHGSPN EADRKRLRRP YQSKTFKVEI SFAAKIPMQA IANALRGQES
201: ENSQEALRVL DIILRQHAAK QGCLLVRQSF FHNDPKNFVD VGGGVLGCRG FHSSFRTTQS GLSLNIDVST TMIIQPGPIV DFLIANQNAK DPFSLDWAKA
301: KRILKNLRVK TSPTNQEYKI TGLSDRPCRE QLFTLKQKGK DADGEVQTTE VTVFDYFVNH RNIELRYSAD LPCINVGKPK RPTYFPIELC SLVSLQRYTK
401: SLSTFQRSSL VEKSRQKPQE RMQVLSNALK INQYDAEPLL RSCGISISNN FTQIEGRVLP PPKLKTGGDD FVPRNGRWNF NNKRLVDPTK IERWAVVNFS
501: ARCNIQGLVS DLIKCGKQKG IVVEDPFDVF EESPQVRRAP PLVRVEKMFE QVQSKLPGAP KFLLCLLPER KNCDVYGPWK RKNLAEYGIV TQCIAPTRVN
601: DQYITNVLLK INAKLGGLNS MLTVEHSPAI PMVSKVPTII IGMDVSHGSP GQSDVPSIAA VVSSRQWPSI SRYRASVRTQ SPKVEMIDNL FKRASDTEDE
701: GIMREALLDF YVSSGKRKPE HIIIFRDGVS ESQFSQVLNV ELDQIIEACK FLDEKWSPKF VVIVAQKNHH TKFFQPNDPN NVPPGTIIDN KVCHPRNYDF
801: YLCAHAGMIG TTRPTHYHVL YDELGFSADD LQELVHNLSY VYQRSTTAIS VVAPICYAHL AATQMGQWMK FEDASETSSG HNGVTNAGPV SVPQLPKLEE
901: KVSSSMFFC

Best Arabidopsis Sequence Match ( AT2G27040.2 )
(BLAST)

001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC

Arabidopsis Description

AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.