Factsheet for PGSC0003DMT400054667

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g069270.2.1	Tomato	cytosol	73.15	54.66
PGSC0003DMT400054669	Potato	cytosol	78.63	54.61
KRH36727	Soybean	nucleus	31.23	50.33
PGSC0003DMT400054661	Potato	nucleus	65.48	48.78
VIT_10s0042g01180.t01	Wine grape	nucleus, plastid	54.66	42.09
VIT_10s0042g01150.t01	Wine grape	nucleus	55.21	41.16
VIT_10s0042g01200.t01	Wine grape	nucleus	55.62	40.85
KRG89432	Soybean	nucleus	53.15	40.17
CDY70429	Canola	plastid	48.49	39.91
PGSC0003DMT400039204	Potato	cytosol	7.95	38.67
KRH11732	Soybean	nucleus	53.29	37.51
TraesCS2A01G419800.2	Wheat	nucleus	35.21	36.45
Zm00001d002316_P003	Maize	plastid	42.33	36.1
AT1G31280.1	Thale cress	nucleus	49.45	35.6
Zm00001d026300_P001	Maize	nucleus	42.47	35.19
PGSC0003DMT400070806	Potato	nucleus	13.97	34.93
CDY02373	Canola	nucleus	48.63	34.7
Bra040815.1-P	Field mustard	cytosol	47.95	34.69
CDY25885	Canola	cytosol	47.95	34.65
Bra023172.1-P	Field mustard	nucleus	49.04	34.52
CDY55876	Canola	cytosol	48.22	34.01
TraesCS2B01G438600.1	Wheat	cytosol, nucleus, plastid	36.16	32.88
Os04t0615700-01	Rice	nucleus, plasma membrane	42.88	30.27
KXG27113	Sorghum	nucleus	43.7	29.21
TraesCS2D01G417000.1	Wheat	nucleus	41.92	29.2
TraesCS2A01G419900.1	Wheat	nucleus	41.92	29.17
TraesCS2B01G439000.2	Wheat	nucleus, unclear	41.78	29.16
AT1G31290.1	Thale cress	nucleus	47.67	29.15
HORVU2Hr1G098650.1	Barley	nucleus	41.78	29.13
PGSC0003DMT400062439	Potato	nucleus	37.4	27.25
TraesCS2D01G416500.1	Wheat	nucleus	38.9	26.87
TraesCS2B01G438200.1	Wheat	nucleus	39.18	26.75
HORVU2Hr1G098620.2	Barley	nucleus	37.26	26.69
PGSC0003DMT400053301	Potato	nucleus	33.42	26.52
TraesCS2A01G419500.1	Wheat	nucleus	37.81	25.92
PGSC0003DMT400077569	Potato	nucleus, plastid	33.7	25.65
PGSC0003DMT400058471	Potato	nucleus	30.82	24.75
PGSC0003DMT400069459	Potato	nucleus	30.68	24.53
PGSC0003DMT400069313	Potato	cytosol	34.52	23.91
PGSC0003DMT400018363	Potato	cytosol, nucleus, plastid	32.74	23.32
PGSC0003DMT400079716	Potato	nucleus	34.52	22.36
Os04t0615800-01	Rice	nucleus	0.41	0.57

Protein Annotations

MapMan:12.5.1.15.2	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0031047
InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	UniProt:M1BWP2	InterPro:PAZ_dom	InterPro:PAZ_dom_sf
PFAM:PF02170	PFAM:PF02171	EnsemblPlantsGene:PGSC0003DMG400021212	PGSC:PGSC0003DMG400021212	EnsemblPlants:PGSC0003DMT400054667	PFscan:PS50821
PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF4	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SMART:SM00949	SMART:SM00950	SUPFAM:SSF101690	SUPFAM:SSF53098	UniParc:UPI000296F133	SEG:seg

Description

Argonaute protein group [Source:PGSC_GENE;Acc:PGSC0003DMG400021212]

Coordinates

chr2:+:28408045..28411045

Molecular Weight (calculated)

82905.0 Da

IEP (calculated)

8.402

GRAVY (calculated)

-0.370

Length

730 amino acids

Sequence
(BLAST)

001: MDIQHQPVTD KSDLRQIREK WLTDKPAEFP CDKTGKKNIF SAVQLPTGCF TVNGGDDAME RSYDVIIKPV AELQLSKLSE YLSGHIPRDV QGMALSLDYS
101: VLALPEPMLV LDYLKEYLKE PNEVTFKNNR QAAQVALKGL KVGVIHRHTN QKFIIKELTD LDTHKLTFPL RDPKGKDSTT EVFLVDYFRD KYQREIQFRD
201: FPSLVIGKGN KINYVPMELC VLVEKRRYPK EDLHKDTALI LKNISLAQPQ QAICEMVQAK DGPCGAITGN FEIGVDRNMT CVLGRILPPP DLRLGSQSRH
301: HVNDKCQSNL VGKSVVEGKE IRRWALIDFS SKNDRDLKRQ VDVFVDKLKD RYLRLGINME EPAVKHFTHM NELSAVGKVE KLLNDVVNEA SQKNKGKLQM
401: IVCVMASKDN GYKYLKWVSE TKIGIVTQCC LSSNAYNNAK DQFLANLCLK INAKLGGSNM ELMERLPNFG SEDNVMFIGA DVNHPTGKDS DKCPSIAAVV
501: ATVNWPTANR YAARVRPQEH RTDKILEFGK MCKDLVDTYA KLNSVKPNKI VVFRDGVSES QFDMVLNEEL KDLKEAIYES DKYRPSITLV VAQKRHHTRL
601: FPKVGNVPPG TVVDTQIVHP SDFDFYLCSH FGQLGTSKAT YYHVLHDDNG FSSDRLQKLI YNMCFTFARC TKPVSLVPPV YYADLVAYRG RMFQEVLMEM
701: NASSSTTSSV SFEQSFYKLH NDLQNIMFFV

Best Arabidopsis Sequence Match ( AT1G31280.1 )
(BLAST)

0001: MERGGYRGGR GDGRGRGGRG YGGGGGGGEQ GRDRGYGGGE QGRGRGSERG GGNRGQGRGE QQDFRSQSQR GPPPGHGGRG TTQFQQPRPQ VAPQPSQAPA
0101: SYAGSVGGVA GRGAWGRKPQ VPSDSASPST STTVVSEPVR VAEVMNLKPS VQVATSDRKE PMKRPDRGGV VAVRRVNLYV NHYKVNFNPE SVIRHYDVEI
0201: KGEIPTKKVS RFELAMVRDK VFTDNPDEFP LAMTAYDGQK NIFSAVELPT GSYKVEYPKT EEMRGRSYTF TIKQVNVLKL GDLKEYMTGR SSFNPRDVLQ
0301: GMDVVMKEHP SKCMITVGKS FFTRETEPDE DFRFGVIAAK GYRHTLKPTA QGLSLCLDYS VLAFRKAMSV IEYLKLYFNW SDMRQFRRRD VEEELIGLKV
0401: TVNHRKNKQK LTIVGLSMQN TKDIKFDLID QEGNEPPRKT SIVEYFRIKY GRHIVHKDIP CLDLGKNGRQ NFVPMEFCDL VEGQIYPKDN LDKDSALWLK
0501: KLSLVNPQQR QRNIDKMIKA RNGPSGGEII GNFGLKVDTN MTPVEGRVLK APSLKLAERG RVVREEPNPR QNNQWNLMKK GVTRGSIVKH WAVLDFTASE
0601: RFNKMPNDFV DNLIDRCWRL GMQMEAPIVY KTSRMETLSN GNAIEELLRS VIDEASRKHG GARPTLVLCA MSRKDDGYKT LKWIAETKLG LVTQCFLTGP
0701: ATKGGDQYRA NLALKMNAKV GGSNVELMDT FSFFKKEDEV MFIGADVNHP AARDKMSPSI VAVVGTLNWP EANRYAARVI AQPHRKEEIQ GFGDACLELV
0801: KAHVQATGKR PNKIVIFRDG VSDAQFDMVL NVELLDVKLT FEKNGYNPKI TVIVAQKRHQ TRFFPATNND GSDKGNVPSG TVVDTKVIHP YEYDFYLCSH
0901: HGGIGTSKPT HYYTLWDELG FTSDQVQKLI FEMCFTFTRC TKPVSLVPPV YYADMVAFRG RMYHEASSRE KNFKQPRGAS TSAASLASSL SSLTIEDKAI
1001: FKLHAELENV MFFV

Arabidopsis Description

AGO2Protein argonaute 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.