Factsheet for TraesCS2B01G439000.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, unclear

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, unclear
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G419900.1	Wheat	nucleus	98.37	98.09
TraesCS2D01G417000.1	Wheat	nucleus	98.28	98.09
HORVU2Hr1G098650.1	Barley	nucleus	95.03	94.94
Os04t0615700-01	Rice	nucleus, plasma membrane	72.08	72.92
Zm00001d026300_P001	Maize	nucleus	60.52	71.85
Zm00001d002316_P003	Maize	plastid	58.6	71.61
KXG27113	Sorghum	nucleus	69.5	66.58
TraesCS2B01G438600.1	Wheat	cytosol, nucleus, plastid	41.49	54.05
TraesCS2B01G438200.1	Wheat	nucleus	48.76	47.71
KRH36727	Soybean	nucleus	19.6	45.25
PGSC0003DMT400054667	Potato	cytosol	29.16	41.78
VIT_10s0042g01180.t01	Wine grape	nucleus, plastid	37.09	40.93
KRG89432	Soybean	nucleus	37.67	40.79
Solyc02g069270.2.1	Tomato	cytosol	37.86	40.53
TraesCS3B01G027100.1	Wheat	cytosol	5.93	40.52
VIT_10s0042g01150.t01	Wine grape	nucleus	37.57	40.14
CDY70429	Canola	plastid	33.27	39.23
VIT_10s0042g01200.t01	Wine grape	nucleus	36.71	38.63
Solyc02g069260.2.1	Tomato	nucleus	37.95	38.1
PGSC0003DMT400054669	Potato	cytosol	38.15	37.96
TraesCS4B01G026600.1	Wheat	cytosol	17.59	37.94
CDY02373	Canola	nucleus	36.71	37.54
AT1G31280.1	Thale cress	nucleus	36.23	37.38
Bra023172.1-P	Field mustard	nucleus	37.0	37.32
Solyc02g069280.2.1	Tomato	nucleus	35.37	37.04
KRH11732	Soybean	nucleus	36.62	36.93
Bra040815.1-P	Field mustard	cytosol	35.56	36.87
CDY25885	Canola	cytosol	35.56	36.83
CDY55876	Canola	cytosol	36.42	36.81
PGSC0003DMT400054661	Potato	nucleus	31.84	33.98
AT1G31290.1	Thale cress	nucleus	37.09	32.5
TraesCS3B01G135800.1	Wheat	cytosol	26.1	32.46
TraesCS5B01G468000.1	Wheat	plastid	26.96	32.3
TraesCS7B01G256500.1	Wheat	cytosol	29.35	32.11
TraesCS2B01G195200.2	Wheat	nucleus	30.21	31.35
TraesCS3B01G287600.1	Wheat	nucleus	27.15	31.35
TraesCS4B01G024000.1	Wheat	nucleus	30.31	30.96
TraesCS7B01G482100.1	Wheat	nucleus	30.4	30.81
TraesCS5B01G451400.2	Wheat	plastid	31.17	30.75
TraesCS6B01G206700.1	Wheat	plastid	27.72	30.59
TraesCS5B01G455700.1	Wheat	cytosol, mitochondrion, plastid	28.78	30.56
TraesCS2B01G434000.1	Wheat	nucleus	30.59	30.48
TraesCS6B01G466700.1	Wheat	nucleus	29.06	30.01
TraesCS2B01G421000.2	Wheat	nucleus	31.36	29.76
TraesCS5B01G454200.1	Wheat	cytosol	19.12	29.63
TraesCS5B01G162300.1	Wheat	mitochondrion	25.33	29.51
TraesCS5B01G116900.5	Wheat	cytosol, mitochondrion, nucleus, plastid	23.8	29.33
TraesCS6B01G270900.1	Wheat	nucleus	29.92	28.85
TraesCS5B01G452500.1	Wheat	nucleus	25.05	28.73
TraesCS7B01G437900.1	Wheat	cytosol	21.7	28.13
TraesCS7B01G437700.1	Wheat	nucleus	23.61	28.1
TraesCS1B01G480100.1	Wheat	nucleus	24.57	27.72
TraesCS7B01G450300.1	Wheat	nucleus	24.0	27.31
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	24.38	27.01
TraesCS7B01G450200.2	Wheat	nucleus	22.75	25.7
TraesCS7B01G373400.1	Wheat	nucleus	18.83	25.06
TraesCS5B01G458100.1	Wheat	cytosol	20.75	22.84
Os04t0615800-01	Rice	nucleus	0.38	0.76

Protein Annotations

MapMan:12.5.1.15.2	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005515	InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf
PFAM:PF02170	PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487	PFAM:PF16488
PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF4	InterPro:Piwi	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	SMART:SM00949	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098
EnsemblPlantsGene:TraesCS2B01G439000	EnsemblPlants:TraesCS2B01G439000.2	TIGR:cd02846	TIGR:cd04657	SEG:seg	:

Description

No Description!

Coordinates

chr2B:-:631202690..631207629

Molecular Weight (calculated)

113196.0 Da

IEP (calculated)

9.751

GRAVY (calculated)

-0.400

Length

1046 amino acids

Sequence
(BLAST)

0001: MDYEQGGGGG RGRGRSRGGG RGGAPGGYGP QGGGGGYGGG GQGRGAQGSG GGYGGGGGYG PQGGMEGRGG GYAPRGGGYA PRGGGEGRGR GYGPQGGGEG
0101: RGGGPGGRGP GGGGRGYGPG GGRGGNAWAQ PGRGTAGGPG EYVPVRAPAP APAPASAARR VESEEAGRSS GSVERISSKE VAKLEPLAPP VAVSPNGIRV
0201: PMQRPDGGGT LCQARVQLLV NHFIVKYPKL STFFHYDIDI KFDPASSKVS GKELSNADFL SAKAELFKDD SFRQLSSAVA YDGKRNLFTV AQLPEGLFRV
0301: RVRSKTYIVS VEFKKQLPLS QLSELPVARE ILQGLDVIVR EASSWSKIIL GHGFYSPQSK ADMGSGVVSM KGTQQTLKHT QQGLVLCVDY SVMPFRRDGP
0401: VLDIVRQFIK PLPLDYRTAL NKTHREKLVY ELKSQRVTVS HRKTKQKYTI QGFTDLPASQ ITFLDSESGQ SRKLVDYFAQ QYGKVIEYQM LPCLDLSKSK
0501: DKPNYVPIEL CKLVEGQRYP MANLNKDTDR ALKSKALIKA AERKWEIETA VKAEDGPCRG EIAQQFGISL DVKMMEVTGR VLSPPMLTLG SSRGAPGSLS
0601: ITPSNCQWNL MGKKLVEGKA LQCWGIVDFS ARPSHNKQQA LDGNMFINYI VKKCCDLGIQ MNKTACFVHL SAMSVLSDPH QLYEELNKAK QAAVKKNQKL
0701: QLLFCPMSEQ HPGYKTLKLI CETQLGIQTQ CFLSHLANKT QGQDQYMSNL ALKINSKLGG INVQLQDKLP LDNGVPYMFI GADVNHPSPG NVESPSIAAV
0801: VASMNRGATK YVPRIRAQPH RCEVIKNLGE IVQELIGVFE KKAGVKPQRI IYFRDGVSDG QFEMVLNEEL ADMEKVIKVK GYSPTITVIV AKKRHHTRLF
0901: PKEHNEPLQT KNGNVLPGTV VDTRIVDPVT YDFYLCSHNG LIGTSRPTHY YNLMDEHGYG SDDLQRLVYN LCFVFARCTK PVSLATPVYY ADLAAYRGRL
1001: YYEGMLASQP QVRSSSSSAS SAAAGASDFS NFPMLHVDLQ DNMFFI

Best Arabidopsis Sequence Match ( AT1G31290.1 )
(BLAST)

0001: MDRGGYRGGR GDGRGRGGGG DRGRGYSGRG DGRGRGGDGD RGYSGRGDGH GRGGGGDRGR GYSGRGDGRG RGGGGDRGRG YSGRGDGHGR GGGGDRGRGY
0101: SGRGRGFVQD RDGGWVNPGQ SSGGHVRGRG TQLQQPPPQE VPPSSSQAQV SQGVAPGDVG QGGVGDVGRD GVGDVGRDGV GDVGQGGVGD VGQVGVGDVG
0201: QGGVGDVGQG GVGDVGRDGV GDVGRDGVGD VGRGGVGDRG QSQSGLSSGH FGRGTQLQQP QPQAVSQSSS QGQVSQSFAT GGVGLGAWAR KPQLFSDSTV
0301: LPSSSSSNVV ASHTASGSQV MTPKPSSSDK KEPVKRPDKG GNIKVKGVIN LSVNHFRVSF STESVIRHYD VDIKGENSSK KISRFELAMV KEKLFKDNND
0401: FPNAMTAYDG QKNIFSAVEL PTGSFKVDFS ETEEIMRGRS YTFIIKQVKE LKLLDLQAYI DGRSTFIPRD VLQGMDVVMK EHPSKRMITV GKRFFSTRLE
0501: IDFGYGVGAA KGFHHTLKPT VQGLSLCLNS SLLAFRKAIS VIEYLKLYFG WRNIRQFKNC RPDDVVQELI GLKVTVDHRK TKQKFIIMGL SKDDTKDIKF
0601: DFIDHAGNQP PRKISIVEYF KEKYGRDIDH KDIPCLNLGK KGRENFVPME FCNLVEGQIF PKEKLYRDSA AWLKELSLVT PQQRLENINK MIKSSDGPRG
0701: GDIIGNFGLR VDPNMTTVEG RVLEAPTLKL TDRRGNPIHE KLMSESNQWN LTTKGVTKGS IIKHWAVLDF TASESLKKKM PGYFVNKLIE RCKGLGMQME
0801: APIVCKTSSM ETLYDGNALE ELLRSVIDEA SHNHGGACPT LVLCAMTGKH DGYKTLKWIA ETKLGLVTQC FLTISAIKGE TVSDQYLANL ALKINAKVGG
0901: TNVELVDNIF SFFKKEDKVM FIGADVNHPA AHDNMSPSIV AVVGTLNWPE ANRYAARVKA QSHRKEEIQG FGETCWELIE AHSQAPEKRP NKIVIFRDGV
1001: SDGQFDMVLN VELQNVKDVF AKVGYNPQIT VIVAQKRHQT RFFPATTSKD GRAKGNVPSG TVVDTTIIHP FEYDFYLCSQ HGAIGTSKPT HYYVLSDEIG
1101: FNSNQIQKLI FDLCFTFTRC TKPVALVPPV SYADKAASRG RVYYEASLMK KNSKQSRGAS SSSASVASSS SSVTMEDKEI FKVHAGIENF MFFV

Arabidopsis Description

AGO3Protein argonaute 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHF2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.