Factsheet for TraesCS6B01G206700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G166300.1	Wheat	plastid	96.41	96.11
TraesCS6A01G178100.2	Wheat	plastid	95.89	95.89
HORVU6Hr1G036840.2	Barley	plastid	94.73	94.63
TraesCS7B01G256500.1	Wheat	cytosol	78.69	78.03
GSMUA_Achr4P30720_001	Banana	nucleus	74.47	75.67
GSMUA_Achr6P05310_001	Banana	nucleus	73.95	75.54
GSMUA_Achr7P13220_001	Banana	cytosol	70.68	70.82
VIT_11s0016g04620.t01	Wine grape	cytosol	66.77	69.94
KRH03770	Soybean	nucleus	65.61	68.88
KRH54842	Soybean	nucleus	65.93	68.76
KRH63036	Soybean	cytosol	65.72	68.54
KRH56656	Soybean	cytosol	65.51	68.39
Solyc12g006790.1.1	Tomato	nucleus	66.03	67.1
PGSC0003DMT400053301	Potato	nucleus	64.03	65.98
TraesCS4B01G026600.1	Wheat	cytosol	30.91	60.41
TraesCS3B01G027100.1	Wheat	cytosol	9.7	60.13
TraesCS6B01G466700.1	Wheat	nucleus	61.92	57.95
TraesCS2B01G421000.2	Wheat	nucleus	66.14	56.9
TraesCS7B01G482100.1	Wheat	nucleus	61.71	56.69
TraesCS6B01G270900.1	Wheat	nucleus	63.92	55.85
TraesCS5B01G468000.1	Wheat	plastid	50.21	54.52
TraesCS3B01G135800.1	Wheat	cytosol	45.25	51.01
TraesCS3B01G287600.1	Wheat	nucleus	48.0	50.22
TraesCS5B01G116900.5	Wheat	cytosol, mitochondrion, nucleus, plastid	44.83	50.06
TraesCS5B01G454200.1	Wheat	cytosol	35.23	49.48
TraesCS5B01G452500.1	Wheat	nucleus	45.78	47.59
TraesCS2B01G195200.2	Wheat	nucleus	49.37	46.43
TraesCS5B01G455700.1	Wheat	cytosol, mitochondrion, plastid	47.89	46.09
TraesCS5B01G451400.2	Wheat	plastid	51.37	45.94
TraesCS4B01G024000.1	Wheat	nucleus	49.16	45.51
TraesCS5B01G458100.1	Wheat	cytosol	36.81	36.74
TraesCS7B01G437900.1	Wheat	cytosol	29.22	34.32
TraesCS5B01G162300.1	Wheat	mitochondrion	31.96	33.74
TraesCS7B01G437700.1	Wheat	nucleus	31.01	33.45
TraesCS1B01G480100.1	Wheat	nucleus	32.07	32.79
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	32.17	32.31
TraesCS7B01G373400.1	Wheat	nucleus	26.58	32.06
TraesCS7B01G450300.1	Wheat	nucleus	31.01	31.99
TraesCS7B01G450200.2	Wheat	nucleus	30.8	31.53
TraesCS2B01G434000.1	Wheat	nucleus	33.54	30.29
TraesCS2B01G438600.1	Wheat	cytosol, nucleus, plastid	24.05	28.39
TraesCS2B01G439000.2	Wheat	nucleus, unclear	30.59	27.72
TraesCS2B01G438200.1	Wheat	nucleus	25.84	22.92

Protein Annotations

MapMan:16.10.3	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170
PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487	PFAM:PF16488	PFscan:PS50821
PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF45	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SMART:SM00949	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS6B01G206700
EnsemblPlants:TraesCS6B01G206700.1	TIGR:cd02846	TIGR:cd04657	SEG:seg	:	:

Description

No Description!

Coordinates

chr6B:+:260540333..260547586

Molecular Weight (calculated)

105977.0 Da

IEP (calculated)

9.772

GRAVY (calculated)

-0.339

Length

948 amino acids

Sequence
(BLAST)

001: MLEVLEVPWT VVGGRAAGGC PGPPRRQALQ SSLARPKAAA RSPGVGGKKC NSGASGPRRN GPKGRNKEEA AAVPAACTGV FAIAPAEPPP VSSKGLELCR
101: RPGFGRAGTR CVVKANHFLA EVADKDLTQY DVKITPEVRS RSVNRAIVAE LVRLYRASDL GMRLPAYDGR SNLYTAGRLP FDAREFVIRL AADNDGVSGA
201: TAREKEYKVA IKFAAGADLR NLRDFMAGRQ PDEPQGALQV LDVVLREVAS QRYLSVRRSF YSPDIRTPQR LGDGLQSWFG FYQSIRPTQM GLSLNIDMSS
301: TAFVEPLPVI DFAAQILGKD VMSRPLSDAN RVRVKKALRD LKVEITHRGS LRRKYRVFGL TAQPTHELIF LIDDEMKSVV EYFKEMYGFT IKQQHLPCLL
401: VGNQKKPNYL PMEACKIVEG QRYKKRLNEK QITSLLKVTC QRPGDKEMDI RRTVHQNGYD QDPYAKEFGI NISDKLTSIE ARVLPAPWLK YHDTGKESEC
501: LPRVGQWDMK NKKVVNGCTV NHWASINFSR SVQENTASGF CQELAQTCRL LGMEFNSEPA IPMYSARPEQ AVQALKHVYN AALKKLKGKE LELLLVILPD
601: SNGALYGDIK RICETELGLM SQCCLAKHVF KICKRYLANV SLKINVKMGG RNTVLLDAVS RRIPLVSDIP TIIFGADVTH PETREDTSPS IAAVVASQDW
701: PEVTKYAGLV CAQAYRQELI QDLYKTWHDP QRGTVTGGMI RELLISFRKA TGQKPLRIIF YRDGVSAGQF HQVLLYELDA IRKACASLEP NYQPPVTFVI
801: VQKRHHTKLF ANNHNDKSST DKSGNILPGT VVDSKICHPT QFDFYLCSHA GIQGTSKPAH YHVLWDENNF TADEMQTLTN NLCYTYARCT RSVSVVPPVY
901: YAHLAAFRAR FYMDQDNLSV KNANWRNGGA MKTMPAVKER VKRVMFYC

Best Arabidopsis Sequence Match ( AT1G48410.1 )
(BLAST)

0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG
0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF
0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH
0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRYIPVGRSF YSPDIGKKQS LGDGLESWRG FYQSIRPTQM GLSLNIDMSS TAFIEANPVI QFVCDLLNRD
0401: ISSRPLSDAD RVKIKKALRG VKVEVTHRGN MRRKYRISGL TAVATRELTF PVDERNTQKS VVEYFHETYG FRIQHTQLPC LQVGNSNRPN YLPMEVCKIV
0501: EGQRYSKRLN ERQITALLKV TCQRPIDREK DILQTVQLND YAKDNYAQEF GIKISTSLAS VEARILPPPW LKYHESGREG TCLPQVGQWN MMNKKMINGG
0601: TVNNWICINF SRQVQDNLAR TFCQELAQMC YVSGMAFNPE PVLPPVSARP EQVEKVLKTR YHDATSKLSQ GKEIDLLIVI LPDNNGSLYG DLKRICETEL
0701: GIVSQCCLTK HVFKMSKQYM ANVALKINVK VGGRNTVLVD ALSRRIPLVS DRPTIIFGAD VTHPHPGEDS SPSIAAVVAS QDWPEITKYA GLVCAQAHRQ
0801: ELIQDLFKEW KDPQKGVVTG GMIKELLIAF RRSTGHKPLR IIFYRDGVSE GQFYQVLLYE LDAIRKACAS LEAGYQPPVT FVVVQKRHHT RLFAQNHNDR
0901: HSVDRSGNIL PGTVVDSKIC HPTEFDFYLC SHAGIQGTSR PAHYHVLWDE NNFTADGLQS LTNNLCYTYA RCTRSVSIVP PAYYAHLAAF RARFYMEPET
1001: SDSGSMASGS MARGGGMAGR STRGPNVNAA VRPLPALKEN VKRVMFYC

Arabidopsis Description

AGO1ICU9 [Source:UniProtKB/TrEMBL;Acc:A0A178WL72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.