Factsheet for PGSC0003DMT400053301

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g006790.1.1	Tomato	nucleus	96.41	95.07
VIT_11s0016g04620.t01	Wine grape	cytosol	73.48	74.7
KRH63036	Soybean	cytosol	73.15	74.04
KRH03770	Soybean	nucleus	72.17	73.53
KRH54842	Soybean	nucleus	72.5	73.38
KRH56656	Soybean	cytosol	72.39	73.35
GSMUA_Achr6P05310_001	Banana	nucleus	72.28	71.66
GSMUA_Achr4P30720_001	Banana	nucleus	72.39	71.38
GSMUA_Achr7P13220_001	Banana	cytosol	69.78	67.86
TraesCS7D01G351700.1	Wheat	cytosol	70.22	67.86
Zm00001d036917_P009	Maize	nucleus	70.98	67.6
TraesCS7B01G256500.1	Wheat	cytosol	70.22	67.57
PGSC0003DMT400077569	Potato	nucleus, plastid	70.22	67.36
TraesCS7A01G371200.2	Wheat	cytosol	70.33	67.26
Os06t0597400-01	Rice	cytosol	71.52	67.21
KXG20286	Sorghum	cytosol	71.52	67.07
Zm00001d046438_P003	Maize	cytosol	71.41	65.37
TraesCS6B01G206700.1	Wheat	plastid	65.98	64.03
TraesCS6D01G166300.1	Wheat	plastid	65.87	63.72
HORVU6Hr1G036840.2	Barley	plastid	65.43	63.44
TraesCS6A01G178100.2	Wheat	plastid	65.11	63.19
PGSC0003DMT400069313	Potato	cytosol	66.09	57.69
PGSC0003DMT400079716	Potato	nucleus	64.78	52.88
PGSC0003DMT400039204	Potato	cytosol	7.61	46.67
PGSC0003DMT400070806	Potato	nucleus	14.46	45.55
PGSC0003DMT400018363	Potato	cytosol, nucleus, plastid	49.46	44.39
PGSC0003DMT400054667	Potato	cytosol	26.52	33.42
PGSC0003DMT400062439	Potato	nucleus	35.65	32.73
PGSC0003DMT400058471	Potato	nucleus	31.52	31.9
PGSC0003DMT400069459	Potato	nucleus	31.09	31.33
PGSC0003DMT400054669	Potato	cytosol	31.52	27.59
PGSC0003DMT400054661	Potato	nucleus	27.17	25.51

Protein Annotations

Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	MapMan:35.1	InterPro:ArgoL2	InterPro:Argonaute_Mid_dom
InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0019827	GO:GO:0031047	GO:GO:0048366	InterPro:IPR003100	InterPro:IPR003165
InterPro:IPR036397	UniProt:M1BUS3	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170	PFAM:PF02171
PFAM:PF16486	PFAM:PF16487	PFAM:PF16488	EnsemblPlantsGene:PGSC0003DMG400020685	PGSC:PGSC0003DMG400020685	EnsemblPlants:PGSC0003DMT400053301
PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF104	InterPro:Piwi	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	SMART:SM00949	SMART:SM00950	SUPFAM:SSF101690	SUPFAM:SSF53098	UniParc:UPI000294D10F
SEG:seg	:	:	:	:	:

Description

Protein argonaute PNH1 [Source:PGSC_GENE;Acc:PGSC0003DMG400020685]

Coordinates

chr12:+:5170968..5177153

Molecular Weight (calculated)

104178.0 Da

IEP (calculated)

9.379

GRAVY (calculated)

-0.426

Length

920 amino acids

Sequence
(BLAST)

001: MPQWQMKLDL EQKHMVSRTP LQESLNENAQ SHSSGERSRM EEVKRNNNAG KRRGRRKGKG ILVEKMQDMS NNSEVSPACS ASSSSERSLV FPRRPGYGQL
101: GTKCLVKANH FIAELSERNL SQYSVRITPE VKCTRLNKAI MAELVKLHKD ADLGKRIPVF DGRRTLYTAG LLPFNSKEFT ITLGDDDEWI GITKEREFAV
201: TIKFISQANM LQLRELLSGK HVDNPPQALK IIDIVLRELA SQRYISVGRF FYSPSIKKPQ TLDMSTTAFI EPLPVVEFVA QVLGKDVSSR PLSDADRIKV
301: KKALRGVKVE VTHRGNIRRK YRISGLTSQP TRELIFPVDE EKNMKSVIEY FQEVYGFTIQ YPHLPCLLVG SQKKVNYLPM EACKILEGQR YTKRLDEKQI
401: TSLLKSSCQR PREQEMDILQ TVRQNGYKQD PIAKEFGINI DDKLASVEAR VLPAPWLKYH DAGKEKECHP QLGQWNMLNK KVINGSTVNH WACINFSCNV
501: QENAARGFCH QLAQMCQVSG MEFNCEPVIP VYYARPDQAK KALNYVYNAA ANKLGGKELE LLIAILPDNN GSLYGTLKKI CETDLGMISQ CCLTKHVLKI
601: SKQYLSNVSL KINVKMGGRN TVLLDALRWK IPLVSDIPTI IFGADVTHPE SGEDCSPSIA AVVASQDWPE VTKYAGLVCA QPHRQELIQD LYRTWQDPQR
701: GTMSGGMIRE LLLAFKKATG QKPLRIIFYR DGVSDGQFYQ VLLYELDAIR KACASLEPGY QPPVTFIVVQ KRHHTRLLPN NHNDRNHTDR SGNILPGTVV
801: DTKICHPTEF DFYLCSHAGI QGTSRPAHYH VLWDENNFSA DEMQSLTNNL CYTYARCTRS VSVVPPAYYA HLAAYRARFY VEPDSRDNGS MRSTRATNGS
901: VNVRPLPALK EKVKNVMFYC

Best Arabidopsis Sequence Match ( AT5G43810.3 )
(BLAST)

001: MPIRQMKDSS ETHLVIKTQP LKHHNPKTVQ NGKIPPPSPS PVTVTTPATV TQSQASSPSP PSKNRSRRRN RGGRKSDQGD VCMRPSSRPR KPPPPSQTTS
101: SAVSVATAGE IVAVNHQMQM GVRKNSNFAP RPGFGTLGTK CIVKANHFLA DLPTKDLNQY DVTITPEVSS KSVNRAIIAE LVRLYKESDL GRRLPAYDGR
201: KSLYTAGELP FTWKEFSVKI VDEDDGIING PKRERSYKVA IKFVARANMH HLGEFLAGKR ADCPQEAVQI LDIVLRELSV KRFCPVGRSF FSPDIKTPQR
301: LGEGLESWCG FYQSIRPTQM GLSLNIDMAS AAFIEPLPVI EFVAQLLGKD VLSKPLSDSD RVKIKKGLRG VKVEVTHRAN VRRKYRVAGL TTQPTRELMF
401: PVDENCTMKS VIEYFQEMYG FTIQHTHLPC LQVGNQKKAS YLPMEACKIV EGQRYTKRLN EKQITALLKV TCQRPRDREN DILRTVQHNA YDQDPYAKEF
501: GMNISEKLAS VEARILPAPW LKYHENGKEK DCLPQVGQWN MMNKKMINGM TVSRWACVNF SRSVQENVAR GFCNELGQMC EVSGMEFNPE PVIPIYSARP
601: DQVEKALKHV YHTSMNKTKG KELELLLAIL PDNNGSLYGD LKRICETELG LISQCCLTKH VFKISKQYLA NVSLKINVKM GGRNTVLVDA ISCRIPLVSD
701: IPTIIFGADV THPENGEESS PSIAAVVASQ DWPEVTKYAG LVCAQAHRQE LIQDLYKTWQ DPVRGTVSGG MIRDLLISFR KATGQKPLRI IFYRDGVSEG
801: QFYQVLLYEL DAIRKACASL EPNYQPPVTF IVVQKRHHTR LFANNHRDKN STDRSGNILP GTVVDTKICH PTEFDFYLCS HAGIQGTSRP AHYHVLWDEN
901: NFTADGIQSL TNNLCYTYAR CTRSVSIVPP AYYAHLAAFR ARFYLEPEIM QDNGSPGKKN TKTTTVGDVG VKPLPALKEN VKRVMFYC

Arabidopsis Description

AGO10Protein argonaute 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGW1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.