Factsheet for Solyc12g006790.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053301	Potato	nucleus	95.07	96.41
VIT_11s0016g04620.t01	Wine grape	cytosol	74.38	76.69
KRH63036	Soybean	cytosol	74.17	76.13
KRH56656	Soybean	cytosol	73.74	75.77
KRH03770	Soybean	nucleus	73.31	75.75
KRH54842	Soybean	nucleus	73.42	75.36
GSMUA_Achr6P05310_001	Banana	nucleus	72.99	73.38
GSMUA_Achr4P30720_001	Banana	nucleus	73.1	73.1
GSMUA_Achr7P13220_001	Banana	cytosol	71.28	70.3
Zm00001d036917_P009	Maize	nucleus	72.13	69.67
TraesCS7D01G351700.1	Wheat	cytosol	71.06	69.64
TraesCS7B01G256500.1	Wheat	cytosol	71.06	69.35
Os06t0597400-01	Rice	cytosol	72.45	69.05
TraesCS7A01G371200.2	Wheat	cytosol	71.17	69.02
KXG20286	Sorghum	cytosol	72.45	68.91
Solyc09g082830.2.1	Tomato	nucleus	71.38	67.82
Zm00001d046438_P003	Maize	cytosol	72.35	67.16
TraesCS6B01G206700.1	Wheat	plastid	67.1	66.03
TraesCS6D01G166300.1	Wheat	plastid	67.1	65.83
HORVU6Hr1G036840.2	Barley	plastid	66.67	65.54
TraesCS6A01G178100.2	Wheat	plastid	66.24	65.19
Solyc03g098280.2.1	Tomato	nucleus	65.92	62.76
Solyc06g072300.2.1	Tomato	nucleus	67.52	59.77
Solyc06g074730.2.1	Tomato	nucleus	48.23	44.51
Solyc01g010970.2.1	Tomato	nucleus	36.44	34.0
Solyc01g096750.1.1	Tomato	nucleus	32.05	33.94
Solyc01g008960.2.1	Tomato	nucleus	32.69	33.55
Solyc07g049500.2.1	Tomato	nucleus	31.94	33.0
Solyc06g073540.2.1	Tomato	nucleus	32.05	32.75
Solyc06g073530.1.1	Tomato	nucleus	30.65	31.64
Solyc03g111760.2.1	Tomato	mitochondrion	29.05	29.59
Solyc02g069270.2.1	Tomato	cytosol	30.76	29.38
Solyc02g069280.2.1	Tomato	nucleus	30.87	28.83
Solyc02g069260.2.1	Tomato	nucleus	31.94	28.6

Protein Annotations

MapMan:16.10.3	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_Mid_dom	InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019827	GO:GO:0031047	GO:GO:0048366	InterPro:IPR003100
InterPro:IPR003165	InterPro:IPR036397	UniProt:K4DBL6	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170
PFAM:PF02171	PFAM:PF08699	PFAM:PF16486	PFAM:PF16487	PFAM:PF16488	PFscan:PS50821
PFscan:PS50822	PANTHER:PTHR22891	PANTHER:PTHR22891:SF104	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SMART:SM00949	SMART:SM00950	SMART:SM01163	SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:Solyc12g006790.1
EnsemblPlants:Solyc12g006790.1.1	UniParc:UPI000276A95E	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:-:1200019..1205876

Molecular Weight (calculated)

105500.0 Da

IEP (calculated)

9.529

GRAVY (calculated)

-0.403

Length

933 amino acids

Sequence
(BLAST)

001: MKLELEQKHM VSRTPLQESL NQNAQCQSSG EHSRMEEVKR HNNAGKRRGR RKGKGILVEK MQDNSVCSAS SSSERSLVFP RRPGYGQLGT KCLVKANHFI
101: AELSERNLSQ YSVRITPEVK CTRLNKAIMA ELVKLHKDAD LGKRVPVFDG RRTLYTAGLL PFNSKEFTIT LGDDDEWIGI TKERKFAVTI KLISQANMLQ
201: LRELLAGKQV DNPPQALKII DIVLRELASQ RYISVGRFFY SPNIKKPQTL GNGLQSWRGF YQSIKPTQMG LSLNIDMSTT AFIEPLPVVE FVAQVLGKDV
301: SSRPLSDADR IKVKKALRGV KVEVTHRGNI RRKYRISGLT SQPTRELIFP VDEEKNMKSV IEYFQEVYGY TIQYPHLPCL LVGSQKKVNY LPMEACKILE
401: GQRYTKRLDE KQITSLLKSS CQRPREQEMD ILQTIRQNGY KQDPIAKEFG INIDDKLASV EARVLPAPWL KYHDAGKEKE CHPQLGQWNM LNKKVINGST
501: VNHWACINFS CNVQENAARG FCHQLAQMCQ VSGMEFNCEP VIPVYYARPD QAKKALNYVY NAAVNKLGGK ELELLIAILP DNNGSLYGTL KKICETDLGM
601: ISQCCLTKHV LKISKQYLSN VSLKINVKMG GRNTVLLDAL RWKIPLVSDI PTIIFGADVT HPESGEDFSP SIAAVVASQD WPEVTKYAGL VCAQPHRQEL
701: IQDLYRTWQD PQRGTMSGGM IRELLLAFKK ATGQKPLRII FYRDGVSDGQ FYQVLLYELD AIRKACASLE PGYQPPVTFI VVQKRHHTRL LPNNHNDRNH
801: TDRSGNILPG TVVDTKICHP TEFDFYLCSH AGIQGTSRPA HYHVLWDENN FSADEMQSLT NNLCYTYARC TRSVSVVPPA YYAHLAAYGA RFYVEPDSRD
901: NGSIRGTRAT NGSVNVRPLP ALKEKVKNVM FYC

Best Arabidopsis Sequence Match ( AT5G43810.3 )
(BLAST)

001: MPIRQMKDSS ETHLVIKTQP LKHHNPKTVQ NGKIPPPSPS PVTVTTPATV TQSQASSPSP PSKNRSRRRN RGGRKSDQGD VCMRPSSRPR KPPPPSQTTS
101: SAVSVATAGE IVAVNHQMQM GVRKNSNFAP RPGFGTLGTK CIVKANHFLA DLPTKDLNQY DVTITPEVSS KSVNRAIIAE LVRLYKESDL GRRLPAYDGR
201: KSLYTAGELP FTWKEFSVKI VDEDDGIING PKRERSYKVA IKFVARANMH HLGEFLAGKR ADCPQEAVQI LDIVLRELSV KRFCPVGRSF FSPDIKTPQR
301: LGEGLESWCG FYQSIRPTQM GLSLNIDMAS AAFIEPLPVI EFVAQLLGKD VLSKPLSDSD RVKIKKGLRG VKVEVTHRAN VRRKYRVAGL TTQPTRELMF
401: PVDENCTMKS VIEYFQEMYG FTIQHTHLPC LQVGNQKKAS YLPMEACKIV EGQRYTKRLN EKQITALLKV TCQRPRDREN DILRTVQHNA YDQDPYAKEF
501: GMNISEKLAS VEARILPAPW LKYHENGKEK DCLPQVGQWN MMNKKMINGM TVSRWACVNF SRSVQENVAR GFCNELGQMC EVSGMEFNPE PVIPIYSARP
601: DQVEKALKHV YHTSMNKTKG KELELLLAIL PDNNGSLYGD LKRICETELG LISQCCLTKH VFKISKQYLA NVSLKINVKM GGRNTVLVDA ISCRIPLVSD
701: IPTIIFGADV THPENGEESS PSIAAVVASQ DWPEVTKYAG LVCAQAHRQE LIQDLYKTWQ DPVRGTVSGG MIRDLLISFR KATGQKPLRI IFYRDGVSEG
801: QFYQVLLYEL DAIRKACASL EPNYQPPVTF IVVQKRHHTR LFANNHRDKN STDRSGNILP GTVVDTKICH PTEFDFYLCS HAGIQGTSRP AHYHVLWDEN
901: NFTADGIQSL TNNLCYTYAR CTRSVSIVPP AYYAHLAAFR ARFYLEPEIM QDNGSPGKKN TKTTTVGDVG VKPLPALKEN VKRVMFYC

Arabidopsis Description

AGO10Protein argonaute 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGW1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.