Factsheet for Solyc01g008960.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g096390.2.1
Solyc11g008150.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27040.1	Solyc01g096390.2.1	AT2G40030.1	19410546
AT2G27040.1	Solyc11g008150.1.1	AT5G04290.1	19410546

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058471	Potato	nucleus	98.24	98.24
Solyc06g073540.2.1	Tomato	nucleus	86.8	86.42
VIT_06s0009g01200.t01	Wine grape	nucleus	83.39	83.02
KRH14678	Soybean	nucleus	78.44	78.7
KRH73469	Soybean	nucleus	78.11	78.37
Solyc06g073530.1.1	Tomato	nucleus	77.67	78.1
CDY48192	Canola	nucleus	74.59	73.54
Bra034318.1-P	Field mustard	nucleus	74.48	73.43
CDX77061	Canola	nucleus	74.37	73.32
KRG89867	Soybean	nucleus	76.35	73.28
AT2G27040.1	Thale cress	nucleus	73.93	72.73
CDY04475	Canola	nucleus	73.82	72.7
Os01t0275600-01	Rice	nucleus	72.06	72.46
CDY56413	Canola	nucleus	73.49	72.37
GSMUA_Achr9P05150_001	Banana	nucleus	72.72	72.24
Os04t0151800-02	Rice	nucleus	71.95	71.79
OQU86696	Sorghum	nucleus	71.07	71.78
Zm00001d008249_P012	Maize	nucleus	71.07	71.78
Zm00001d040429_P012	Maize	nucleus	70.85	71.48
Solyc01g096750.1.1	Tomato	nucleus	68.98	71.17
TraesCS3A01G188400.1	Wheat	nucleus	70.19	69.65
HORVU3Hr1G038830.1	Barley	nucleus	70.08	69.09
EES18816	Sorghum	nucleus	67.66	67.66
TraesCS3B01G217300.2	Wheat	golgi, nucleus, unclear	70.19	67.58
TraesCS1D01G453600.1	Wheat	nucleus	67.55	66.59
TraesCS1A01G445500.1	Wheat	golgi, unclear	67.66	66.49
TraesCS1B01G480100.1	Wheat	nucleus	67.66	66.34
Zm00001d039214_P025	Maize	nucleus	67.33	66.23
TraesCS7A01G533100.1	Wheat	cytosol	64.03	64.59
TraesCS7D01G520400.1	Wheat	nucleus	63.81	63.81
TraesCS3D01G191600.5	Wheat	nucleus	70.08	63.57
TraesCS7B01G450300.1	Wheat	nucleus	62.93	62.24
TraesCS7D01G458800.1	Wheat	nucleus	31.68	61.8
TraesCS7B01G450200.2	Wheat	nucleus	61.06	59.94
TraesCS7A01G521000.1	Wheat	nucleus	52.37	58.69
TraesCS7B01G437900.1	Wheat	cytosol	51.38	57.87
Solyc07g049500.2.1	Tomato	nucleus	56.99	57.36
TraesCS7B01G437700.1	Wheat	nucleus	54.79	56.66
EES00570	Sorghum	nucleus	55.89	56.57
Os01t0275200-00	Rice	golgi, peroxisome, plastid	28.49	55.46
TraesCS7B01G373400.1	Wheat	nucleus	45.76	52.93
TraesCS7D01G458900.1	Wheat	mitochondrion	10.23	51.1
Solyc03g111760.2.1	Tomato	mitochondrion	48.95	48.58
CDY62055	Canola	nucleus	30.58	48.26
HORVU7Hr1G107770.1	Barley	nucleus	31.35	47.66
Solyc09g082830.2.1	Tomato	nucleus	35.75	33.1
Solyc03g098280.2.1	Tomato	nucleus	35.42	32.86
Solyc12g006790.1.1	Tomato	nucleus	33.55	32.69
Solyc06g072300.2.1	Tomato	nucleus	36.3	31.31
Solyc06g074730.2.1	Tomato	nucleus	33.55	30.17
Solyc01g010970.2.1	Tomato	nucleus	28.93	26.3
Solyc02g069270.2.1	Tomato	cytosol	27.28	25.38
Solyc02g069260.2.1	Tomato	nucleus	28.93	25.24
Solyc02g069280.2.1	Tomato	nucleus	27.28	24.82

Protein Annotations

MapMan:12.5.1.13	Gene3D:2.170.260.10	Gene3D:3.30.420.10	Gene3D:3.40.50.2300	InterPro:ArgoL1	InterPro:ArgoL2
InterPro:Argonaute_N	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0031047	InterPro:IPR003100	InterPro:IPR003165	InterPro:IPR036397
EMBL:JX467709	UniProt:K4AT92	InterPro:PAZ_dom	InterPro:PAZ_dom_sf	PFAM:PF02170	PFAM:PF02171
PFAM:PF08699	PFAM:PF16486	PFAM:PF16488	PFscan:PS50821	PFscan:PS50822	PANTHER:PTHR22891
PANTHER:PTHR22891:SF42	InterPro:Piwi	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00950	SMART:SM01163
SUPFAM:SSF101690	SUPFAM:SSF53098	EnsemblPlantsGene:Solyc01g008960.2	EnsemblPlants:Solyc01g008960.2.1	UniParc:UPI0002763329	SEG:seg

Description

AGO4A [Source:UniProtKB/TrEMBL;Acc:K4AT92]

Coordinates

chr1:+:2976372..2984961

Molecular Weight (calculated)

101758.0 Da

IEP (calculated)

9.045

GRAVY (calculated)

-0.391

Length

909 amino acids

Sequence
(BLAST)

001: MAEEETNGAA AEGLPPPPPV PPDFTPAKTE IEPVKKKILR VPMARRGVGN KGQKIQILTN HFKVNVNNVD GHFFHYSVAL FYEDGRPVDG KGVGRKVLDT
101: VHETYDTELA GKDFAYDGEK SLFTIGALPR NKMEFTVVLD DVISNRNNGN SSPGGHGSPN EADRKRLRRP YQSKTFKVEI SFAAKIPMQA IANALRGQES
201: ENSQEALRVL DIILRQHAAK QGCLLVRQSF FHNDPKNFVD VGAGVLGCRG FHSSFRTTQS GLSLNIDVST TMIIQPGPVV DFLIANQNAK DPFSLDWAKA
301: KRVLKNLRVK TTPTNQEYKI TGLSDRPCRE QLFTLKQKGK DADGEVQTTE VTVFDYFVNH RNIELRYSAD LPCINVGKPK RPTFFPIELC SLVSLQRYTK
401: SLSTFQRSSL VEKSRQKPQE RMQVLSNALK INQYDAEPLL RSCGISISNN FTQIEGRVLP PPKLKTGGDD FVPRNGRWNF NNKRLVDPTK IERWAVVNFS
501: ARCNVQGLVS DLIKCGKQKG IMVEDPFDVF EESPQVRRAP PLVRVEKMFE QVQSKLPGAP KFLLCLLPER KNCDVYGPWK RKNLAEYGIV TQCIAPTRVN
601: DQYITNVLLK INAKLGGLNS MLTVEHSPAI PMVSKVPTII LGMDVSHGSP GQSDVPSIAA VVSSRQWPSI SRYRASVRTQ SPKVEMIDNL FKRTSDTEDD
701: GIMREALLDF YVSSGKRKPE HIIIFRDGVS ESQFSQVLNV ELDQIIEACK FLDEKWSPKF VVIVAQKNHH TKFFQPNDPN NVPPGTIIDN KVCHPRNYDF
801: YLCAHAGMIG TTRPTHYHVL YDELGFSADD LQELVHNLSY VYQRSTTAIS VVAPICYAHL AATQMGQWMK FEDASETSSS HNGVTNAGPV SVPQLPKLEE
901: KVSSSMFFC

Best Arabidopsis Sequence Match ( AT2G27040.2 )
(BLAST)

001: MDSTNGNGAD LESANGANGS GVTEALPPPP PVIPPNVEPV RVKTELAEKK GPVRVPMARK GFGTRGQKIP LLTNHFKVDV ANLQGHFFHY SVALFYDDGR
101: PVEQKGVGRK ILDKVHQTYH SDLDGKEFAY DGEKTLFTYG ALPSNKMDFS VVLEEVSATR ANGNGSPNGN ESPSDGDRKR LRRPNRSKNF RVEISYAAKI
201: PLQALANAMR GQESENSQEA IRVLDIILRQ HAARQGCLLV RQSFFHNDPT NCEPVGGNIL GCRGFHSSFR TTQGGMSLNM DVTTTMIIKP GPVVDFLIAN
301: QNARDPYSID WSKAKRTLKN LRVKVSPSGQ EFKITGLSDK PCREQTFELK KRNPNENGEF ETTEVTVADY FRDTRHIDLQ YSADLPCINV GKPKRPTYIP
401: LELCALVPLQ RYTKALTTFQ RSALVEKSRQ KPQERMTVLS KALKVSNYDA EPLLRSCGIS ISSNFTQVEG RVLPAPKLKM GCGSETFPRN GRWNFNNKEF
501: VEPTKIQRWV VVNFSARCNV RQVVDDLIKI GGSKGIEIAS PFQVFEEGNQ FRRAPPMIRV ENMFKDIQSK LPGVPQFILC VLPDKKNSDL YGPWKKKNLT
601: EFGIVTQCMA PTRQPNDQYL TNLLLKINAK LGGLNSMLSV ERTPAFTVIS KVPTIILGMD VSHGSPGQSD VPSIAAVVSS REWPLISKYR ASVRTQPSKA
701: EMIESLVKKN GTEDDGIIKE LLVDFYTSSN KRKPEHIIIF RDGVSESQFN QVLNIELDQI IEACKLLDAN WNPKFLLLVA QKNHHTKFFQ PTSPENVPPG
801: TIIDNKICHP KNNDFYLCAH AGMIGTTRPT HYHVLYDEIG FSADELQELV HSLSYVYQRS TSAISVVAPI CYAHLAAAQL GTFMKFEDQS ETSSSHGGIT
901: APGPISVAQL PRLKDNVANS MFFC

Arabidopsis Description

AGO4Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.