Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g008960.2.1 | |
| Solyc06g073530.1.1 | |
| Solyc06g073540.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G04290.1 | Solyc01g008960.2.1 | AT2G27040.1 | 19410546 |
| AT5G04290.1 | Solyc06g073530.1.1 | AT2G27040.1 | 19410546 |
| AT5G04290.1 | Solyc06g073540.2.1 | AT2G27040.1 | 19410546 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0006g02120.t01 | Wine grape | cytosol | 5.63 | 68.55 |
| VIT_00s0131g00430.t01 | Wine grape | cytosol | 6.83 | 65.19 |
| VIT_13s0019g04950.t01 | Wine grape | nucleus | 24.52 | 59.58 |
| GSMUA_Achr7P16990_001 | Banana | nucleus, plastid | 16.9 | 40.35 |
| CDY41384 | Canola | nucleus | 19.48 | 38.94 |
| VIT_19s0093g00140.t01 | Wine grape | plastid | 6.16 | 37.05 |
| CDX70245 | Canola | nucleus | 23.86 | 31.91 |
| KRG90770 | Soybean | nucleus | 28.63 | 28.9 |
| KRH35991 | Soybean | nucleus | 27.5 | 28.58 |
| Bra009470.1-P | Field mustard | nucleus | 27.57 | 26.96 |
| AT5G04290.1 | Thale cress | nucleus | 26.38 | 26.66 |
| Solyc04g064700.2.1 | Tomato | nucleus | 17.89 | 25.96 |
| TraesCS1D01G325500.1 | Wheat | nucleus | 21.4 | 23.15 |
| Zm00001d038644_P004 | Maize | nucleus | 24.12 | 22.62 |
| TraesCS1A01G324800.1 | Wheat | nucleus | 23.06 | 22.5 |
| Zm00001d010719_P002 | Maize | nucleus | 23.59 | 22.36 |
| OQU78267 | Sorghum | nucleus | 23.46 | 22.25 |
| TraesCS1B01G337800.2 | Wheat | nucleus | 23.06 | 22.15 |
| HORVU1Hr1G075270.8 | Barley | nucleus, plastid | 23.0 | 21.76 |
| Os05t0506200-01 | Rice | nucleus | 7.49 | 19.28 |
Protein Annotations
| MapMan:12.5.1.5 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0006368 |
| GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032044 |
| InterPro:IPR014722 | InterPro:IPR036735 | UniProt:K4D576 | InterPro:KOW | InterPro:NGN_dom | InterPro:NGN_dom_sf |
| PFAM:PF03439 | PFAM:PF11942 | PANTHER:PTHR11125 | PANTHER:PTHR11125:SF8 | InterPro:Rib_L2_dom2 | SMART:SM00738 |
| SMART:SM00739 | EnsemblPlantsGene:Solyc11g008150.1 | EnsemblPlants:Solyc11g008150.1.1 | InterPro:Spt5_N | InterPro:TF_Spt5_NGN-domain | UniParc:UPI000276A735 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr11:-:2415664..2426131
Molecular Weight (calculated)
161415.0 Da
IEP (calculated)
6.138
GRAVY (calculated)
-1.087
Length
1509 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGRKSVLQKG KEKVTDGKAS SSAGKRKRNS SDDFNDDKTG GRKRKDRSVL QFVDDVAYEV DDDDDDDSDF DFSDSDFFEQ DLLEEEFGSN AEIKNEPART
0101: PQPPVIKEEE MDGEELERML RERYKPGSSF VTYAEDADDR KRQSEQDTLV PSLKDPTIWK VKCTVGRERH SAFCLMQKYI DLLALGTKLQ IISAFALDHV
0201: KGYIYIESDK QCDVYEACKG LCSIYSTRVA PVPLNEVSHL IAVRKKSSGI SEGMWARVKS GIYKGDLAQV VAVNDSRKKV TVKLIPRVDL QAIADKFGGG
0301: VAAKKGIIPA PRLISSTELE DFRPLIQYRK DRDTNLMFEI LDGKMLKDGY LYKKVGTDSL SYWGVLPTEA ELLKFEPSSN DEPHDVDWLT QLYGDRKNKR
0401: NTNDFKVGQK GGEKGESSSS SSMENNFEVD DLVFFGRNDF GIIIGKEKDD SFKIMKYGSE RPVVVSVQLR ELKRASFDKK LFTVKDQLTN VISIGDVVRV
0501: LDGSLKDKQG SVKQIYRGVV FLYDQSEQDN NGYLCVKGQM CERIASSGGV LNGKGSEPGP SGLADFSSSP KSPLSPEKSW RAKDDNNSFK RGDDNEMFSV
0601: GQSLRIRVGP LKGYLCRVIA IRRSDVTVKL DSQQKILTVK SEHLAEVHAK SSVVSLGVDG DSSKPFDLLG TKDGSDDWMV QGATATEGNT GNASWGASGG
0701: SDRTVADSGQ DDGWAKATSA AAATSGASDG WGKKVESHQE STEKVTDGSW GSSVQKQGNN DDSGKTSWGK QDGGSSWGKQ SDVNADNDWK KQDGGSSWSK
0801: PESKTSFNQQ GSGSSWNKSN GGSSWGKQSD ANADTAGEKQ DGGSSWSKAD DSKTSWSKQD GGSWNKKDDG SFSKPAGGTS WDKGSGGSTW NKKEAGSGGG
0901: EDTRSTWGKQ DGGSSWGKEA AGGWKEGESG NSGGTDQEGG SWGRPREFDG GRGSGGRRGR GGWRGGRDQS GRGRSFNQGR SSSWTTDGED NNNNSNNVSF
1001: KGNQSSWSNS QEHGKNVNED TSGPNNQSSD FQSTGGWGAS KPSNDGWSSS WNKNSATTEV GSSGGNQSDW DKKSGEVGGA AGWDNKITQK ASEGNNSAWN
1101: SKSAVEQDGN GKNQNDPWKK TSDGDSSTGW GQSNSWKSGT NDAGGTQDSW SSKSNWSSGS GFGGNNQQSD SYSDRGRGGS WRGGRGRSDR GGYGGRGGSD
1201: AGGFGGRGDS DGGGFGGRGG FRGRGDRGGF RGRGSDGGGF RGRGRGRRDG SGEWQNRNDS QEDKPYSWSK GSGSDAEGWK SNKGSWSQDD NNKGSWKSAD
1301: STVCAEDGGW KKGFDSEKNA SGSGASTTSW NSPGNSWKAS TTTTGGNADD GGWKKGFDSE KNASGSGVST TSWNSPGNSW KASTTTTGGN ADDGGWKKGF
1401: DSEKNVSGTG GSWKTEGNSW KTSTATTGGT SSGWGQQTTV SEKEVQNDKG TSWNQGTGSG NASTAWTANK SNTDDMNKPK ETNDGPSDAW GKSTSSWGKG
1501: NSSGGQGGW
0101: PQPPVIKEEE MDGEELERML RERYKPGSSF VTYAEDADDR KRQSEQDTLV PSLKDPTIWK VKCTVGRERH SAFCLMQKYI DLLALGTKLQ IISAFALDHV
0201: KGYIYIESDK QCDVYEACKG LCSIYSTRVA PVPLNEVSHL IAVRKKSSGI SEGMWARVKS GIYKGDLAQV VAVNDSRKKV TVKLIPRVDL QAIADKFGGG
0301: VAAKKGIIPA PRLISSTELE DFRPLIQYRK DRDTNLMFEI LDGKMLKDGY LYKKVGTDSL SYWGVLPTEA ELLKFEPSSN DEPHDVDWLT QLYGDRKNKR
0401: NTNDFKVGQK GGEKGESSSS SSMENNFEVD DLVFFGRNDF GIIIGKEKDD SFKIMKYGSE RPVVVSVQLR ELKRASFDKK LFTVKDQLTN VISIGDVVRV
0501: LDGSLKDKQG SVKQIYRGVV FLYDQSEQDN NGYLCVKGQM CERIASSGGV LNGKGSEPGP SGLADFSSSP KSPLSPEKSW RAKDDNNSFK RGDDNEMFSV
0601: GQSLRIRVGP LKGYLCRVIA IRRSDVTVKL DSQQKILTVK SEHLAEVHAK SSVVSLGVDG DSSKPFDLLG TKDGSDDWMV QGATATEGNT GNASWGASGG
0701: SDRTVADSGQ DDGWAKATSA AAATSGASDG WGKKVESHQE STEKVTDGSW GSSVQKQGNN DDSGKTSWGK QDGGSSWGKQ SDVNADNDWK KQDGGSSWSK
0801: PESKTSFNQQ GSGSSWNKSN GGSSWGKQSD ANADTAGEKQ DGGSSWSKAD DSKTSWSKQD GGSWNKKDDG SFSKPAGGTS WDKGSGGSTW NKKEAGSGGG
0901: EDTRSTWGKQ DGGSSWGKEA AGGWKEGESG NSGGTDQEGG SWGRPREFDG GRGSGGRRGR GGWRGGRDQS GRGRSFNQGR SSSWTTDGED NNNNSNNVSF
1001: KGNQSSWSNS QEHGKNVNED TSGPNNQSSD FQSTGGWGAS KPSNDGWSSS WNKNSATTEV GSSGGNQSDW DKKSGEVGGA AGWDNKITQK ASEGNNSAWN
1101: SKSAVEQDGN GKNQNDPWKK TSDGDSSTGW GQSNSWKSGT NDAGGTQDSW SSKSNWSSGS GFGGNNQQSD SYSDRGRGGS WRGGRGRSDR GGYGGRGGSD
1201: AGGFGGRGDS DGGGFGGRGG FRGRGDRGGF RGRGSDGGGF RGRGRGRRDG SGEWQNRNDS QEDKPYSWSK GSGSDAEGWK SNKGSWSQDD NNKGSWKSAD
1301: STVCAEDGGW KKGFDSEKNA SGSGASTTSW NSPGNSWKAS TTTTGGNADD GGWKKGFDSE KNASGSGVST TSWNSPGNSW KASTTTTGGN ADDGGWKKGF
1401: DSEKNVSGTG GSWKTEGNSW KTSTATTGGT SSGWGQQTTV SEKEVQNDKG TSWNQGTGSG NASTAWTANK SNTDDMNKPK ETNDGPSDAW GKSTSSWGKG
1501: NSSGGQGGW
0001: MDRKGKGKQV AGSDSYSGGQ KRKNSVEFRD EGLRIKKRKN PEVLQFFEES AEVGYYGGSS DEDDDGLGFL NDMEDEPEVE ESSKAGKGEK GKSSFVFPKE
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSNPWGGSKP TSDVSPTVAD DNTSAWANAA AENKPASASD QPGGWNPWGK TPASEAGTVS GWGDTSASNV EASSWEKQGA STSNVADLGS
0801: WGTHGGSSGG NKQDEDSVWG KLCEASESSQ KKEESSWGKK GGSDGESSWG NKDGNSSASK KDGVSWGQQD KGSDESKGGS AWSNQCGDFG SGKKKDGSSG
0901: WNKSAEDSNA NSKGVPDWGQ PNDGSSWGKK GDGAASWGKK DDGGSWGKKD DGNKDDGGSS WGKKDDGQKD DGGSSWEKKF DGGSSWGKKD DGGSSWGKKD
1001: DGGSLWGKKD DGGSSWGKED DGGSLWGKKD DGESSWGKKD DGESSWGKKD DGGSSWGKKD EGGYSEQTFD RGGRGFGGRR GGGRRGGRDQ FGRGSSFGNS
1101: EDPAPWSKPS GGSSWGKQDG DGGGSSWGKE NDAGGGSSWG KQDNGVGSSW GKQNDGSGGG SSWGKQNDAG GGSSWGKQDS GGDGSSWGKQ DGGGDSGSAW
1201: GKQNNTSGGS SWGKQSDAGG GSSWGKQDGG GGGSSWGKQD GGGGSGSAWG KQNETSNGSS WGKQNDSGGG SSWGKQDGGG GGSSWGKQND GGGGSSWGKQ
1301: GDGGSKPWNE HSGGGRGFGE RRGGGGFRGG RNQSGRGGRS FDGGRSSSWK TDNQENTWKS DQSGGSDWKK GWGEDSNNSK PSGSSAGGCA GNWPSWDTNS
1401: KKETNDKPGD DSKSAWGTSN DQVNTDNNND SWNKKPNNDV GTSGEADNAW GGKTNAVAPS PSGSAAWGTG DKKTGW
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSNPWGGSKP TSDVSPTVAD DNTSAWANAA AENKPASASD QPGGWNPWGK TPASEAGTVS GWGDTSASNV EASSWEKQGA STSNVADLGS
0801: WGTHGGSSGG NKQDEDSVWG KLCEASESSQ KKEESSWGKK GGSDGESSWG NKDGNSSASK KDGVSWGQQD KGSDESKGGS AWSNQCGDFG SGKKKDGSSG
0901: WNKSAEDSNA NSKGVPDWGQ PNDGSSWGKK GDGAASWGKK DDGGSWGKKD DGNKDDGGSS WGKKDDGQKD DGGSSWEKKF DGGSSWGKKD DGGSSWGKKD
1001: DGGSLWGKKD DGGSSWGKED DGGSLWGKKD DGESSWGKKD DGESSWGKKD DGGSSWGKKD EGGYSEQTFD RGGRGFGGRR GGGRRGGRDQ FGRGSSFGNS
1101: EDPAPWSKPS GGSSWGKQDG DGGGSSWGKE NDAGGGSSWG KQDNGVGSSW GKQNDGSGGG SSWGKQNDAG GGSSWGKQDS GGDGSSWGKQ DGGGDSGSAW
1201: GKQNNTSGGS SWGKQSDAGG GSSWGKQDGG GGGSSWGKQD GGGGSGSAWG KQNETSNGSS WGKQNDSGGG SSWGKQDGGG GGSSWGKQND GGGGSSWGKQ
1301: GDGGSKPWNE HSGGGRGFGE RRGGGGFRGG RNQSGRGGRS FDGGRSSSWK TDNQENTWKS DQSGGSDWKK GWGEDSNNSK PSGSSAGGCA GNWPSWDTNS
1401: KKETNDKPGD DSKSAWGTSN DQVNTDNNND SWNKKPNNDV GTSGEADNAW GGKTNAVAPS PSGSAAWGTG DKKTGW
Arabidopsis Description
RDM3Protein RNA-directed DNA methylation 3 [Source:UniProtKB/Swiss-Prot;Acc:F4JW79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.