CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77061
CDY04475
CDY48192
CDY56413
CDY62055

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04290.1	CDX77061	AT2G27040.1	19410546
AT5G04290.1	CDY04475	AT2G27040.1	19410546
AT5G04290.1	CDY48192	AT2G27040.1	19410546
AT5G04290.1	CDY56413	AT2G27040.1	19410546
AT5G04290.1	CDY62055	AT2G27040.1	19410546

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0006g02120.t01	Wine grape	cytosol	9.27	56.45
VIT_00s0131g00430.t01	Wine grape	cytosol	10.99	52.53
VIT_13s0019g04950.t01	Wine grape	nucleus	40.26	48.95
CDX70245	Canola	nucleus	67.81	45.39
GSMUA_Achr7P16990_001	Banana	nucleus, plastid	30.99	37.03
CDY36200	Canola	peroxisome	0.93	36.84
AT5G04290.1	Thale cress	nucleus	60.4	30.54
VIT_19s0093g00140.t01	Wine grape	plastid	9.4	28.29
CDY36201	Canola	cytosol	6.89	24.07
KRH35991	Soybean	nucleus	41.72	21.69
KRG90770	Soybean	nucleus	41.32	20.87
CDX75158	Canola	cytosol	17.62	20.0
CDX83142	Canola	cytosol	27.15	19.69
Solyc11g008150.1.1	Tomato	nucleus	38.94	19.48
CDY34005	Canola	cytosol	27.02	19.43
CDY61565	Canola	nucleus	25.17	19.39
CDX84655	Canola	nucleus	25.43	18.81
OQU78267	Sorghum	nucleus	33.64	15.96
Zm00001d010719_P002	Maize	nucleus	33.51	15.89
TraesCS1B01G337800.2	Wheat	nucleus	32.85	15.79
TraesCS1A01G324800.1	Wheat	nucleus	32.32	15.77
TraesCS1D01G325500.1	Wheat	nucleus	29.14	15.77
HORVU1Hr1G075270.8	Barley	nucleus, plastid	32.98	15.61
Zm00001d038644_P004	Maize	nucleus	32.98	15.48
Os05t0506200-01	Rice	nucleus	9.27	11.95
CDY36202	Canola	cytosol, extracellular	2.12	11.35
CDX75160	Canola	cytosol	3.71	9.72

Protein Annotations

MapMan:12.5.1.5	Gene3D:2.30.30.30	Gene3D:3.30.70.940	GO:A0A078HVK6	UniProt:A0A078HVK6	EnsemblPlants:CDY41384
ProteinID:CDY41384	ProteinID:CDY41384.1	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00072967001	InterPro:IPR014722	InterPro:IPR036735	InterPro:KOW
InterPro:NGN_dom	InterPro:NGN_dom_sf	PFAM:PF03439	PANTHER:PTHR11125	PANTHER:PTHR11125:SF8	InterPro:Rib_L2_dom2
SMART:SM00738	SMART:SM00739	InterPro:TF_Spt5_NGN-domain	UniParc:UPI0004EDACAC	SEG:seg	:

Description

BnaCnng10200DBnaCnng10200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HVK6]

Coordinates

chrLK032497:-:24792..28960

Molecular Weight (calculated)

84226.6 Da

IEP (calculated)

8.701

GRAVY (calculated)

-0.463

Length

755 amino acids

Sequence
(BLAST)

001: MDRKGKGKQI AGAGSSSGKK RKGGVEFRDE GLRISSKRKK PGVLQFFEES AEVGYYGGSS DEECDMDDLF NDMEDEPEVE TSGKDDKGGK GKGSSSFVFP
101: KEEEMNEDDY DRMMEERYKP GSGFVRYAAD DVKSSIEMDA LVPTAHDPPI WKIKCAIGRE KHSVFCLMHK FVELRKIGTK LRILSVFFVE HVKGFIFIEA
201: DKEQDVLEAC MSLNGIYATR MMLLPKSEAP HLLTVQRKTK TFSEGTWARI KSGKYKGDLA QVVAVSDTRG KALIKLIPRI DIAALTQKYG GGVAVQKGLN
301: PAPRLISSSE LEEFRPIIQV RRDRDTGMTF EHLDSLMLKD GFVYKKVSLD SLTSCGVKPS KEEILKFTPL EEKETGDVEW ISEIYGEERR RRRVFPLAKG
401: SHELYNLVCF SRKDFGLIVG VDDKGDGYKV LKEGSDGPVV VSVGKKEMQE PFDSKFSALD LNNKQISIGD VVKIAKGPSE GKQGAVRQVY RGIIFLYAEG
501: EEENGGYLCC KSQSCEKVKL FTEESNDKTG GFDASAFGDS TSSPKSPLSP EKEWQQQPKE KYINSNQGDK GSMYSIGQKL RIRVGPLKGY LCRVIGLRYS
601: DITVKLDSQH KIFTVKSEHL AEVRDRNTMP STSVDAGMGS FQQFDMLGQQ KATMETGQKE QARLKITLQR GATQQLRTNL TLLVINQVVG MPGVNRLLLK
701: LALLVFGEMH VLQKLKLLGE NKELQLPMLK IQVLGVSMVE ALMVTNKTMT QYGVN

Best Arabidopsis Sequence Match ( AT5G04290.2 )
(BLAST)

0001: MDRKGKGKQV AGSDSYSGGQ KRKNSVEFRD EGLRIKKRKN PEVLQFFEES AEVGYYGGSS DEDDDGLGFL NDMEDEPEVE ESSKAGKGEK GKSSFVFPKE
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSNPWGGSKP TSDVSPTVAD DNTSAWANAA AENKPASASD QPGGWNPWGK TPASEAGTVS GWGDTSASNV EASSWEKQGA STSNVADLGS
0801: WGTHGGSSGG NKQDEDSVWG KLCEASESSQ KKEESSWGKK GGSDGESSWG NKDGNSSASK KDGVSWGQQD KGSDESKGGS AWSNQCGDFG SGKKKDGSSG
0901: WNKSAEDSNA NSKGVPDWGQ PNDGSSWGKK GDGAASWGKK DDGGSWGKKD DGNKDDGGSS WGKKDDGQKD DGGSSWEKKF DGGSSWGKKD DGGSSWGKKD
1001: DGGSLWGKKD DGGSSWGKED DGGSLWGKKD DGESSWGKKD DGESSWGKKD DGGSSWGKKD EGGYSEQTFD RGGRGFGGRR GGGRRGGRDQ FGRGSSFGNS
1101: EDPAPWSKPS GGSSWGKQDG DGGGSSWGKE NDAGGGSSWG KQDNGVGSSW GKQNDGSGGG SSWGKQNDAG GGSSWGKQDS GGDGSSWGKQ DGGGDSGSAW
1201: GKQNNTSGGS SWGKQSDAGG GSSWGKQDGG GGGSSWGKQD GGGGSGSAWG KQNETSNGSS WGKQNDSGGG SSWGKQDGGG GGSSWGKQND GGGGSSWGKQ
1301: GDGGSKPWNE HSGGGRGFGE RRGGGGFRGG RNQSGRGGRS FDGGRSSSWK TDNQENTWKS DQSGGSDWKK GWGEDSNNSK PSGSSAGGCA GNWPSWDTNS
1401: KKETNDKPGD DSKSAWGTSN DQVNTDNNND SWNKKPNNDV GTSGEADNAW GGKTNAVAPS PSGSAAWGTG DKKTGW

Arabidopsis Description

RDM3Protein RNA-directed DNA methylation 3 [Source:UniProtKB/Swiss-Prot;Acc:F4JW79]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.