Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022968.1-P | Field mustard | nucleus | 97.55 | 97.65 |
| CDY61565 | Canola | nucleus | 90.01 | 93.78 |
| AT2G34210.1 | Thale cress | nucleus | 68.36 | 70.58 |
| CDX75158 | Canola | cytosol | 42.31 | 64.96 |
| CDX83142 | Canola | cytosol | 65.62 | 64.36 |
| CDY34005 | Canola | cytosol | 66.11 | 64.29 |
| CDY36201 | Canola | cytosol | 13.12 | 62.04 |
| VIT_18s0001g15400.t01 | Wine grape | cytosol | 59.75 | 58.99 |
| KRH53382 | Soybean | nucleus | 59.35 | 58.33 |
| KRH64551 | Soybean | nucleus | 59.55 | 57.9 |
| Solyc04g064700.2.1 | Tomato | nucleus | 56.91 | 55.87 |
| PGSC0003DMT400063938 | Potato | nucleus | 46.03 | 55.49 |
| CDX75160 | Canola | cytosol | 15.08 | 53.47 |
| CDY36202 | Canola | cytosol, extracellular | 6.95 | 50.35 |
| CDY36200 | Canola | peroxisome | 0.59 | 31.58 |
| CDY41384 | Canola | nucleus | 18.81 | 25.43 |
| CDX70245 | Canola | nucleus | 22.53 | 20.39 |
Protein Annotations
| MapMan:15.3.6.3.2 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | GO:A0A078D6E6 | EnsemblPlants:CDX84655 | ProteinID:CDX84655 |
| ProteinID:CDX84655.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006357 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0032784 | EnsemblPlantsGene:GSBRNA2T00141931001 | InterPro:IPR014722 | InterPro:IPR036735 | InterPro:KOW | InterPro:NGN_dom |
| InterPro:NGN_dom_sf | PFAM:PF00467 | PFAM:PF03439 | PFAM:PF11942 | PIRSF:PIRSF036945 | ScanProsite:PS01108 |
| PANTHER:PTHR11125 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L24/26_CS | SMART:SM00738 | SMART:SM00739 | SUPFAM:SSF50104 |
| InterPro:Spt5_N | InterPro:TF_Spt5 | InterPro:TF_Spt5_NGN-domain | InterPro:Translation_prot_SH3-like_sf | UniParc:UPI0004EDE2E1 | SEG:seg |
Description
BnaA03g15750D
Coordinates
chrLK031838:-:586113..591633
Molecular Weight (calculated)
113596.0 Da
IEP (calculated)
6.547
GRAVY (calculated)
-0.547
Length
1021 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAHHSDSDDE DYSYDDESEF DEEEEEEPRS SRKKRGRSNP DSVPGGARGK KRKPSGSIFI EDDVIVDDEE DNDDDVEDGF IEHGEADLGA EDVVGRRHRH
0101: FHEPAAFRSR VGAEEYLDFM QEKYSNPRAE YDDDDDYEDE EAVTEVDQQS LLPSVRDPKL WMVKCAIGRE REVAVCLMQK AVDRGSDFKI KSVIALDHLQ
0201: NFIYIEADME AHVKEAIKGM RNIFANHKIL LVPIREMADV LSVRSKTVEL ARDTWVRMKL GIYKGDLAQV VDVDDVRRRV TVKLIPRIDL QLLADKQEGS
0301: VIVKKKAFVP PPRFMNVDEA RELHIRVERR RDRMTGDYFE NIGNMLFKDG FLYKKVSTKS ISTLNVTPTF DELERFKKAN ENGEIDFVDM STLFANRKKG
0401: HFMKGDEVIV IKGDLKNMKG WVEKVDEESV LIRSEMKGLN NPLAVNEREL CKYFEPGNHV KVVSGTHKEA TGMVVKVDQH VLFLLTDTTK QQIRVFADHV
0501: VKSAEVTNGV TKMGEYELHD LVLLSNLSFG VIIKLDNEAI QVLKGVPGRP ELAIVKHGEI KYKIEKKTTV KDRYKNVMTV KDVVRVTEGP SKGKQGPVMH
0601: IYKGVLFLHD RHNVEHAGFV CVKCSSCVLS GGSYSGADRI VDSFSRLGNS KPPASVPPSP RRFQRADLGY NSGPGGRHWS GRGGRGNDLL VGAYVRVRLG
0701: PYKGYRGRIV EVKEKTVRLE HEAKIVTGKA LLYTHIVNRD AIADGNDNVA TPSQYNMGSQ TPMHPSRTPL HPCMTPMRDS GGLLPSATPI HSGMRTPMRD
0801: RAWNPYTPMS PPRDSWEDGN PGSWGTNLLY PPESPYSRPH EAATPGSGWD SSTPGRSYSD AGTPRDANVP SPYLPMTPSS ASYLPSTPGG QPMTPGTDLD
0901: VNSPDIGGDA ETWLMPGILV SVHKAGGDSH AGVIRDVLPD GSCLIARGDR GEGETVMAIQ SEVRLVCPRK NERVKVVGGK HRGSLAKLIG LDGSDGIVKL
1001: DDTLDVKILD LGLLAKLAMR D
0101: FHEPAAFRSR VGAEEYLDFM QEKYSNPRAE YDDDDDYEDE EAVTEVDQQS LLPSVRDPKL WMVKCAIGRE REVAVCLMQK AVDRGSDFKI KSVIALDHLQ
0201: NFIYIEADME AHVKEAIKGM RNIFANHKIL LVPIREMADV LSVRSKTVEL ARDTWVRMKL GIYKGDLAQV VDVDDVRRRV TVKLIPRIDL QLLADKQEGS
0301: VIVKKKAFVP PPRFMNVDEA RELHIRVERR RDRMTGDYFE NIGNMLFKDG FLYKKVSTKS ISTLNVTPTF DELERFKKAN ENGEIDFVDM STLFANRKKG
0401: HFMKGDEVIV IKGDLKNMKG WVEKVDEESV LIRSEMKGLN NPLAVNEREL CKYFEPGNHV KVVSGTHKEA TGMVVKVDQH VLFLLTDTTK QQIRVFADHV
0501: VKSAEVTNGV TKMGEYELHD LVLLSNLSFG VIIKLDNEAI QVLKGVPGRP ELAIVKHGEI KYKIEKKTTV KDRYKNVMTV KDVVRVTEGP SKGKQGPVMH
0601: IYKGVLFLHD RHNVEHAGFV CVKCSSCVLS GGSYSGADRI VDSFSRLGNS KPPASVPPSP RRFQRADLGY NSGPGGRHWS GRGGRGNDLL VGAYVRVRLG
0701: PYKGYRGRIV EVKEKTVRLE HEAKIVTGKA LLYTHIVNRD AIADGNDNVA TPSQYNMGSQ TPMHPSRTPL HPCMTPMRDS GGLLPSATPI HSGMRTPMRD
0801: RAWNPYTPMS PPRDSWEDGN PGSWGTNLLY PPESPYSRPH EAATPGSGWD SSTPGRSYSD AGTPRDANVP SPYLPMTPSS ASYLPSTPGG QPMTPGTDLD
0901: VNSPDIGGDA ETWLMPGILV SVHKAGGDSH AGVIRDVLPD GSCLIARGDR GEGETVMAIQ SEVRLVCPRK NERVKVVGGK HRGSLAKLIG LDGSDGIVKL
1001: DDTLDVKILD LGLLAKLAMR D
001: MSQYSDDDYS HEDDSEMEDE DEEDEYEPRS SRKGRSGKKR GRSNSDSDGR RGSKKKSSGS AFIDWEVEVD DDVEDDDDDV DVEDGFIVSG EADLPNEDSD
101: HRRQYYQRGF HPHEEDVDEL EKRTLERLST KYAKDDYELD DVNDVDQQAL LPSVRDPKLW LVKCAIGRER EVAVCLMQKI VDRGSEFKIR SAIALDHLQN
201: YVYIEADMEA HVKEAIKGMR NIYANQKILL VPIKEMTAVL SVESKAIDLS RDSWVRMKLG IYKGDLAQVV DVDNVRKRVT VKLIPRIDLQ ALANKLEGTE
301: NVKKKAFAPP PRFMNIDEAR ELHIRVEHRR DPMTGDYFEN IGGMLFKDGF LYKKVSTKSI AAQNVTPTFD ELERFKRPNE NGEIDFVDES TLFANRKKGH
401: FMKGDAVIVI KGDLKNLKGW IEKVDEENVL IRSEMKDLPN PIAVNGRELC KYFEPGNFVK VVSGIHEGGT GMIVKVDQHM LIILSDTTKE HICVFADHVA
501: KSAEVTKGVT KIGDYELHDL VILSDFSFGV ILKLDSEAIQ ILKGVPDSSE VSIVKASEIK YKIWKKINVQ DRYKNVVAVK DVVRVIEGPS KGKQGPVVQI
601: YKGVLFIHDR HNLEHTGFIC TRCSSCVLAG GNFKTPALVP PSPRRFQRAD MGYNPGAGGR HQGGRGRRGD DHLVGTYVKI RLGPFKGYSG RLVEVKDKLV
701: RVELEAKIVT VERKAISDMT DNVVATPQYN MGSQTPMHPS RTPLHPCMTP MRHSGATPIH DGMRTPMRGR AWNPYMPMSP PRDNWEDGNP GSWGTSPYEA
801: ATPGSDWGSS TPGRSSYRDA GTPINNANAP SPMTPSSTSY LPTTPGGQAM TPGTDLDVMS LDIGGDAETR FIPGILVNVH KAGEDRNPGV IRDVLPDGSC
901: VVALGHRGEG ETIRATQNKV SLVCPKKNER VKILGGKYCG STAKVIGEDG QDGIVKLDES LDIKILKLTI LAKLVHE
101: HRRQYYQRGF HPHEEDVDEL EKRTLERLST KYAKDDYELD DVNDVDQQAL LPSVRDPKLW LVKCAIGRER EVAVCLMQKI VDRGSEFKIR SAIALDHLQN
201: YVYIEADMEA HVKEAIKGMR NIYANQKILL VPIKEMTAVL SVESKAIDLS RDSWVRMKLG IYKGDLAQVV DVDNVRKRVT VKLIPRIDLQ ALANKLEGTE
301: NVKKKAFAPP PRFMNIDEAR ELHIRVEHRR DPMTGDYFEN IGGMLFKDGF LYKKVSTKSI AAQNVTPTFD ELERFKRPNE NGEIDFVDES TLFANRKKGH
401: FMKGDAVIVI KGDLKNLKGW IEKVDEENVL IRSEMKDLPN PIAVNGRELC KYFEPGNFVK VVSGIHEGGT GMIVKVDQHM LIILSDTTKE HICVFADHVA
501: KSAEVTKGVT KIGDYELHDL VILSDFSFGV ILKLDSEAIQ ILKGVPDSSE VSIVKASEIK YKIWKKINVQ DRYKNVVAVK DVVRVIEGPS KGKQGPVVQI
601: YKGVLFIHDR HNLEHTGFIC TRCSSCVLAG GNFKTPALVP PSPRRFQRAD MGYNPGAGGR HQGGRGRRGD DHLVGTYVKI RLGPFKGYSG RLVEVKDKLV
701: RVELEAKIVT VERKAISDMT DNVVATPQYN MGSQTPMHPS RTPLHPCMTP MRHSGATPIH DGMRTPMRGR AWNPYMPMSP PRDNWEDGNP GSWGTSPYEA
801: ATPGSDWGSS TPGRSSYRDA GTPINNANAP SPMTPSSTSY LPTTPGGQAM TPGTDLDVMS LDIGGDAETR FIPGILVNVH KAGEDRNPGV IRDVLPDGSC
901: VVALGHRGEG ETIRATQNKV SLVCPKKNER VKILGGKYCG STAKVIGEDG QDGIVKLDES LDIKILKLTI LAKLVHE
Arabidopsis Description
Putative transcription elongation factor SPT5 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:O80770]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.