Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G08350.1 | CDX77061 | AT2G27040.1 | 19343051 |
| AT4G08350.1 | CDY04475 | AT2G27040.1 | 19343051 |
| AT4G08350.1 | CDY48192 | AT2G27040.1 | 19343051 |
| AT4G08350.1 | CDY56413 | AT2G27040.1 | 19343051 |
| AT4G08350.1 | CDY62055 | AT2G27040.1 | 19343051 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83142 | Canola | cytosol | 93.24 | 94.04 |
| AT4G08350.1 | Thale cress | nucleus | 86.0 | 86.74 |
| CDX75158 | Canola | cytosol | 53.62 | 84.66 |
| CDY36201 | Canola | cytosol | 17.14 | 83.33 |
| CDY36202 | Canola | cytosol, extracellular | 10.1 | 75.18 |
| CDX75160 | Canola | cytosol | 20.19 | 73.61 |
| KRH53382 | Soybean | nucleus | 72.0 | 72.76 |
| KRH64551 | Soybean | nucleus | 72.1 | 72.1 |
| VIT_18s0001g15400.t01 | Wine grape | cytosol | 70.38 | 71.47 |
| CDY61565 | Canola | nucleus | 62.86 | 67.35 |
| Solyc04g064700.2.1 | Tomato | nucleus | 66.0 | 66.63 |
| CDX84655 | Canola | nucleus | 64.29 | 66.11 |
| PGSC0003DMT400063938 | Potato | nucleus | 52.86 | 65.53 |
| CDY36200 | Canola | peroxisome | 0.86 | 47.37 |
| CDY41384 | Canola | nucleus | 19.43 | 27.02 |
| CDX70245 | Canola | nucleus | 23.24 | 21.63 |
Protein Annotations
| MapMan:15.3.6.3.2 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | GO:A0A078H618 | UniProt:A0A078H618 | EnsemblPlants:CDY34005 |
| ProteinID:CDY34005 | ProteinID:CDY34005.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0032784 | EnsemblPlantsGene:GSBRNA2T00055860001 | InterPro:IPR014722 |
| InterPro:IPR036735 | InterPro:KOW | InterPro:NGN_dom | InterPro:NGN_dom_sf | PFAM:PF00467 | PFAM:PF03439 |
| PFAM:PF11942 | PIRSF:PIRSF036945 | ScanProsite:PS01108 | PANTHER:PTHR11125 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L24/26_CS |
| SMART:SM00738 | SMART:SM00739 | SUPFAM:SSF50104 | InterPro:Spt5_N | InterPro:TF_Spt5 | InterPro:TF_Spt5_NGN-domain |
| InterPro:Translation_prot_SH3-like_sf | UniParc:UPI0004EDBDC5 | SEG:seg | : | : | : |
Description
BnaC03g28100DTranscription elongation factor SPT5 [Source:UniProtKB/TrEMBL;Acc:A0A078H618]
Coordinates
chrLK032326:-:34501..39820
Molecular Weight (calculated)
116001.0 Da
IEP (calculated)
4.988
GRAVY (calculated)
-0.626
Length
1050 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPRHRGEEDD VDEDYDGMEL EEEEEEDEGR SRGGGSRQKR GRSSFFDDYA EEDSEEEEDD DDDEDYGSRR GKGGGGGGGA KRKKSSAAMF VDDIADQVDD
0101: DDEEGEDEDG EDGFIVDTGT DLPDERVDRR RYHDRGFDEN DEDVDDLERR IQERFSRPQE DYDEEATDVE QQALLPSVRD PKLWMVKCAI GREREVAVCL
0201: MQKYIDRGSD LQIRSVVALD HLKNYIYVEA DKEAHVKEAI KGMRNIYANQ KILLVPIREM TDVLSVESKA IDLSRDTWVR MKIGTYKGDL AKVVDVDNVR
0301: QRVTVKLIPR IDLQALASKL DGREVAKKKA FVPPPRFMNI DEARELHIRV ERRRDPMTGD YFENIGGMLF KDGFMYKTVS LKSIIAQNVT PTFDELEKFN
0401: KPSENGESGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EDNVLIRSGL KGLPDPLAVN EKELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLILLS DTTKEHVRVF ADHVVESSEV TTGVTKIGQY ELHDLVLLDN LTFGVTIRLE NEAFQVLKGN PDRPEVALVK LREIKCKLDR KISVQDRYKN
0601: VISVSDDVRI VEGPSKGKQG PVRHIYKGVL FIYDRHHLEH AGFICAKCTS CVVVGGSRSG ANRNGGDSLS RFSNFKAPAP VPPSPRRFQR GGMGYNARGR
0701: GRGGRGGRDD SLLGTTVKIR LGPFKGYRGP VVEVKGDTVR VELEMKIVTG KPLYLLLDTF DRNAISDNVA VTTPSRDTSR YSMGSETPMH PSRTPLHPYM
0801: TPMRDAGATP IHDGMRTPMR DRAWNPYTPM SPPRDNWEEG NPGSWGTSPN YQPGSPPSRA YEAPTPGSGW ASTPGGSYSD AGTPRDSGSA YVNAPSPYLP
0901: STPGQPMTPS SASYLPGTPG GQPMTPGTGL DVMSPVIGGD AEAWFMPDIL VEIHKAGEDS DVGVIRDVSD GTCKVSLGSS GEGDTIMALP GELEIVPPRK
1001: NDRVKIVGGQ YRGSIGKLIG IDGSDGIVKI EDNLDVKILD LAILAKFVQP
0101: DDEEGEDEDG EDGFIVDTGT DLPDERVDRR RYHDRGFDEN DEDVDDLERR IQERFSRPQE DYDEEATDVE QQALLPSVRD PKLWMVKCAI GREREVAVCL
0201: MQKYIDRGSD LQIRSVVALD HLKNYIYVEA DKEAHVKEAI KGMRNIYANQ KILLVPIREM TDVLSVESKA IDLSRDTWVR MKIGTYKGDL AKVVDVDNVR
0301: QRVTVKLIPR IDLQALASKL DGREVAKKKA FVPPPRFMNI DEARELHIRV ERRRDPMTGD YFENIGGMLF KDGFMYKTVS LKSIIAQNVT PTFDELEKFN
0401: KPSENGESGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EDNVLIRSGL KGLPDPLAVN EKELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLILLS DTTKEHVRVF ADHVVESSEV TTGVTKIGQY ELHDLVLLDN LTFGVTIRLE NEAFQVLKGN PDRPEVALVK LREIKCKLDR KISVQDRYKN
0601: VISVSDDVRI VEGPSKGKQG PVRHIYKGVL FIYDRHHLEH AGFICAKCTS CVVVGGSRSG ANRNGGDSLS RFSNFKAPAP VPPSPRRFQR GGMGYNARGR
0701: GRGGRGGRDD SLLGTTVKIR LGPFKGYRGP VVEVKGDTVR VELEMKIVTG KPLYLLLDTF DRNAISDNVA VTTPSRDTSR YSMGSETPMH PSRTPLHPYM
0801: TPMRDAGATP IHDGMRTPMR DRAWNPYTPM SPPRDNWEEG NPGSWGTSPN YQPGSPPSRA YEAPTPGSGW ASTPGGSYSD AGTPRDSGSA YVNAPSPYLP
0901: STPGQPMTPS SASYLPGTPG GQPMTPGTGL DVMSPVIGGD AEAWFMPDIL VEIHKAGEDS DVGVIRDVSD GTCKVSLGSS GEGDTIMALP GELEIVPPRK
1001: NDRVKIVGGQ YRGSIGKLIG IDGSDGIVKI EDNLDVKILD LAILAKFVQP
0001: MPRSRDEDDE LDGDYEALDL EEEEEEDEEE EEERGRGGGG SRRKRGRSNF IDDYAEEDSQ EEDDDDEDYG SSRGGKGAAS KRKKPSASIF LDREAHQVDD
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P
Arabidopsis Description
GTA02Putative transcription elongation factor SPT5 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.