Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g008960.2.1 | |
| Solyc06g073530.1.1 | |
| Solyc06g073540.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G08350.1 | Solyc01g008960.2.1 | AT2G27040.1 | 19343051 |
| AT4G08350.1 | Solyc06g073530.1.1 | AT2G27040.1 | 19343051 |
| AT4G08350.1 | Solyc06g073540.2.1 | AT2G27040.1 | 19343051 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400063938 | Potato | nucleus | 74.52 | 91.5 |
| VIT_18s0001g15400.t01 | Wine grape | cytosol | 73.08 | 73.5 |
| Zm00001d047048_P001 | Maize | cytosol, mitochondrion, peroxisome | 10.1 | 71.92 |
| KRH53382 | Soybean | nucleus | 71.54 | 71.61 |
| KRH64551 | Soybean | nucleus | 72.02 | 71.33 |
| AT4G08350.1 | Thale cress | nucleus | 68.17 | 68.11 |
| GSMUA_Achr3P08080_001 | Banana | cytosol | 65.19 | 67.4 |
| Os06t0208300-01 | Rice | cytosol | 18.85 | 67.35 |
| CDY34005 | Canola | cytosol | 66.63 | 66.0 |
| EER88041 | Sorghum | nucleus | 65.96 | 65.33 |
| Bra000641.1-P | Field mustard | cytosol | 65.19 | 65.13 |
| CDX83142 | Canola | cytosol | 65.19 | 65.13 |
| Zm00001d037142_P001 | Maize | cytosol | 64.42 | 64.42 |
| TraesCS7A01G168300.1 | Wheat | nucleus | 64.62 | 64.0 |
| TraesCS7B01G073100.1 | Wheat | cytosol | 64.52 | 63.84 |
| TraesCS7D01G169200.1 | Wheat | cytosol | 64.52 | 63.78 |
| HORVU7Hr1G035280.12 | Barley | cytosol | 64.33 | 63.47 |
| CDX75158 | Canola | cytosol | 40.48 | 63.31 |
| Zm00001d044436_P001 | Maize | extracellular, mitochondrion | 7.12 | 61.16 |
| Zm00001d044971_P005 | Maize | cytosol, nucleus, plastid | 62.4 | 60.2 |
| OQU85804 | Sorghum | cytosol | 58.46 | 60.02 |
| CDY36201 | Canola | cytosol | 12.31 | 59.26 |
| Bra037858.1-P | Field mustard | cytosol | 4.71 | 59.04 |
| TraesCS6B01G355400.1 | Wheat | nucleus | 58.27 | 58.44 |
| TraesCS6A01G325100.2 | Wheat | nucleus | 58.27 | 58.38 |
| CDY61565 | Canola | nucleus | 55.0 | 58.37 |
| TraesCS6D01G304800.1 | Wheat | nucleus | 58.27 | 58.27 |
| Bra022968.1-P | Field mustard | nucleus | 56.25 | 57.35 |
| AT2G34210.1 | Thale cress | nucleus | 54.52 | 57.33 |
| CDX84655 | Canola | nucleus | 55.87 | 56.91 |
| Bra037857.1-P | Field mustard | cytosol | 13.56 | 56.18 |
| Os02t0772000-00 | Rice | nucleus | 18.65 | 56.07 |
| Solyc11g008150.1.1 | Tomato | nucleus | 25.96 | 17.89 |
Protein Annotations
| MapMan:15.3.6.3.2 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0006368 |
| GO:GO:0006397 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0032044 | GO:GO:0032784 | InterPro:IPR014722 | InterPro:IPR036735 | UniProt:K4BT61 |
| InterPro:KOW | InterPro:NGN_dom | InterPro:NGN_dom_sf | PFAM:PF00467 | PFAM:PF03439 | PFAM:PF11942 |
| PIRSF:PIRSF036945 | ScanProsite:PS01108 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L24/26_CS | SMART:SM00738 | SMART:SM00739 |
| SUPFAM:SSF50104 | EnsemblPlantsGene:Solyc04g064700.2 | EnsemblPlants:Solyc04g064700.2.1 | InterPro:Spt5_N | InterPro:TF_Spt5 | InterPro:TF_Spt5_NGN-domain |
| InterPro:Translation_prot_SH3-like_sf | UniParc:UPI000276645E | SEG:seg | : | : | : |
Description
Transcription elongation factor SPT5 [Source:UniProtKB/TrEMBL;Acc:K4BT61]
Coordinates
chr4:+:55839835..55853990
Molecular Weight (calculated)
114744.0 Da
IEP (calculated)
5.140
GRAVY (calculated)
-0.664
Length
1040 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPRHRDYDDD DDEPEEEEED VYEEEDEEEE DDGGKAGRKR RRSDFIDDAA EEDDDEDEDD DDEDYGGGGG GGGGRRRPKR RTGSEFFDLE AAVDSDEDEE
0101: EEEGEDDFIV DSGADIPDED GARREYRHRL LPHEDQEEDL EELTRSIKQR YARSPHVEYD EEATDVEQQA LLPSVRDPKL WMVKCAIGRE REVAVCLMQK
0201: AIDRGPELQI RSVVALDHLK NYIYIEADKE AHVREACKGM RNIYASAKIM LVPIKEMTDV LSVESKAVDL ARDTWVRMKM GTYKGDLAKV MDVDNVRQKV
0301: VVKLIPRIDL QALANKLEGR EAPKKKAFIP PPRFMNIDEA REMNLRVERR RDPMSGDYFE NIGGMMFKDG FLYKTVSMKS IRTLNIQPTF DELEKFRQTG
0401: EGGDGDMASL STLFANRKKG HFMKGDRVIV VKGDLRNLKG HVEKVEEDTV HIRPNQKDLP LTLAFSDKEL CKYFDLGNHV KVVSGSSEGA TGMVVSVQGH
0501: VVNLVSDTTK ELLRVFADNV VESSEVTSGL TRIGEYELHD LVILDNKSFG VIIRVDSEAF QVLKGVPDRP EVALVRLREI KAKVEKKGNA QDRYKNHLAV
0601: KDVVKVLEGP CKGKQGPVEH IFRGVVFIYD RHHLEHAGYI CAKTQSCVLI GGSRANGDRN GNPMSSRFAH MRPPPRAPQS PMRSSRGGPP MSYGGRHRGG
0701: RGHDALVGAD VKIRLGPFKG CKGRVVDIKG TSVRVELEAQ MKVVTVDRNH ISDNVNVSVP FREPSRYGLG SETPSHPSRT PLHPFMTPMR DPGATPIHDG
0801: MRTPMRDRAW NPMSPTSDRG GDWEDGNPAS WGSSPQYQPS SPRSRAYEAP TPGSGWTNTP SGNYSDAGTP RDNGSAYANA PSPYLPSTPG GQPPMTPSSA
0901: YIPGTPGGQP MTPGSGGLDM MSPIGGGDTE GPWLLPDILV NVRKSNDDTV IGVVHEVLAD GSCSVGLGSS GNGDTIIAHP TEIDIIVPKK SDKIKIMGGP
1001: QRGATGKLIG VDGTDGIVKV DDTLDVKILD MVLLAKLAHA
0101: EEEGEDDFIV DSGADIPDED GARREYRHRL LPHEDQEEDL EELTRSIKQR YARSPHVEYD EEATDVEQQA LLPSVRDPKL WMVKCAIGRE REVAVCLMQK
0201: AIDRGPELQI RSVVALDHLK NYIYIEADKE AHVREACKGM RNIYASAKIM LVPIKEMTDV LSVESKAVDL ARDTWVRMKM GTYKGDLAKV MDVDNVRQKV
0301: VVKLIPRIDL QALANKLEGR EAPKKKAFIP PPRFMNIDEA REMNLRVERR RDPMSGDYFE NIGGMMFKDG FLYKTVSMKS IRTLNIQPTF DELEKFRQTG
0401: EGGDGDMASL STLFANRKKG HFMKGDRVIV VKGDLRNLKG HVEKVEEDTV HIRPNQKDLP LTLAFSDKEL CKYFDLGNHV KVVSGSSEGA TGMVVSVQGH
0501: VVNLVSDTTK ELLRVFADNV VESSEVTSGL TRIGEYELHD LVILDNKSFG VIIRVDSEAF QVLKGVPDRP EVALVRLREI KAKVEKKGNA QDRYKNHLAV
0601: KDVVKVLEGP CKGKQGPVEH IFRGVVFIYD RHHLEHAGYI CAKTQSCVLI GGSRANGDRN GNPMSSRFAH MRPPPRAPQS PMRSSRGGPP MSYGGRHRGG
0701: RGHDALVGAD VKIRLGPFKG CKGRVVDIKG TSVRVELEAQ MKVVTVDRNH ISDNVNVSVP FREPSRYGLG SETPSHPSRT PLHPFMTPMR DPGATPIHDG
0801: MRTPMRDRAW NPMSPTSDRG GDWEDGNPAS WGSSPQYQPS SPRSRAYEAP TPGSGWTNTP SGNYSDAGTP RDNGSAYANA PSPYLPSTPG GQPPMTPSSA
0901: YIPGTPGGQP MTPGSGGLDM MSPIGGGDTE GPWLLPDILV NVRKSNDDTV IGVVHEVLAD GSCSVGLGSS GNGDTIIAHP TEIDIIVPKK SDKIKIMGGP
1001: QRGATGKLIG VDGTDGIVKV DDTLDVKILD MVLLAKLAHA
0001: MPRSRDEDDE LDGDYEALDL EEEEEEDEEE EEERGRGGGG SRRKRGRSNF IDDYAEEDSQ EEDDDDEDYG SSRGGKGAAS KRKKPSASIF LDREAHQVDD
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P
Arabidopsis Description
GTA02Putative transcription elongation factor SPT5 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.