Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G168300.1 | Wheat | nucleus | 98.67 | 98.76 |
| TraesCS7D01G169200.1 | Wheat | cytosol | 97.43 | 97.34 |
| HORVU7Hr1G035280.12 | Barley | cytosol | 96.0 | 95.73 |
| Os06t0208300-01 | Rice | cytosol | 24.83 | 89.69 |
| Zm00001d047048_P001 | Maize | cytosol, mitochondrion, peroxisome | 12.37 | 89.04 |
| EER88041 | Sorghum | nucleus | 88.68 | 88.76 |
| Zm00001d037142_P001 | Maize | cytosol | 86.2 | 87.12 |
| Zm00001d044971_P005 | Maize | cytosol, nucleus, plastid | 84.21 | 82.1 |
| GSMUA_Achr3P08080_001 | Banana | cytosol | 72.79 | 76.04 |
| TraesCS6B01G355400.1 | Wheat | nucleus | 67.36 | 68.27 |
| KRH53382 | Soybean | nucleus | 66.79 | 67.56 |
| VIT_18s0001g15400.t01 | Wine grape | cytosol | 66.41 | 67.5 |
| KRH64551 | Soybean | nucleus | 66.89 | 66.95 |
| Solyc04g064700.2.1 | Tomato | nucleus | 63.84 | 64.52 |
| Bra000641.1-P | Field mustard | cytosol | 60.7 | 61.29 |
| Bra037857.1-P | Field mustard | cytosol | 14.18 | 59.36 |
| PGSC0003DMT400063939 | Potato | cytoskeleton, cytosol, peroxisome | 13.32 | 57.14 |
| Bra022968.1-P | Field mustard | nucleus | 52.62 | 54.22 |
| Bra037858.1-P | Field mustard | cytosol | 4.19 | 53.01 |
| CDY36202 | Canola | cytosol, extracellular | 6.18 | 46.1 |
| AT4G08360.1 | Thale cress | cytosol | 5.9 | 43.97 |
| CDY36200 | Canola | peroxisome | 0.57 | 31.58 |
| TraesCS1B01G337800.2 | Wheat | nucleus | 24.26 | 16.23 |
Protein Annotations
| MapMan:15.3.6.3.2 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0032784 | InterPro:IPR014722 | InterPro:IPR036735 |
| InterPro:KOW | InterPro:NGN_dom | InterPro:NGN_dom_sf | PFAM:PF00467 | PFAM:PF03439 | PFAM:PF11942 |
| PIRSF:PIRSF036945 | ScanProsite:PS01108 | PANTHER:PTHR11125 | PANTHER:PTHR11125:SF7 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L24/26_CS |
| SMART:SM00738 | SMART:SM00739 | SUPFAM:SSF50104 | InterPro:Spt5_N | InterPro:TF_Spt5 | InterPro:TF_Spt5_NGN-domain |
| EnsemblPlantsGene:TraesCS7B01G073100 | EnsemblPlants:TraesCS7B01G073100.1 | InterPro:Translation_prot_SH3-like_sf | TIGR:cd06081 | TIGR:cd06082 | TIGR:cd06083 |
| TIGR:cd06084 | TIGR:cd06085 | TIGR:cd06086 | TIGR:cd09888 | SEG:seg | : |
Description
No Description!
Coordinates
chr7B:-:81423485..81431477
Molecular Weight (calculated)
115886.0 Da
IEP (calculated)
5.002
GRAVY (calculated)
-0.571
Length
1051 amino acids
Sequence
(BLAST)
(BLAST)
0001: MARRGRDDDD DEVEEEEEDE EEAYDLDDEE EDEGDDYEEE ARGRGKAASR SRAPAGGVRK RSRQDNFIDD SAIEDDDEDE EDDGGSRPRK KGGGGGVRGF
0101: FDEEAQVDED EEEEDEGEGE DDFINDAGAD IPDDDAGRGS RSRHSIPMRD EEEDIDEIER QVRERYARST HIEYGEEAAD VEQQALLPSV KDPKLWMVKC
0201: AIGHERETAI CLMQKFIDRT DLQIKSVVAL DHLKNYIYVE AEKEAHVKEA CKGLRNIYSS AKITLVPIKE MADVLYVESK NVDLARDTWV RMKLGVYKGD
0301: LAKVVDVDNV RQRVTVKLIP RIDLQVLASK LEGRVVAKKK TFVPPPRFFN IDEAREMHIR VERRRDKDSG EYFEMVDGLM FKDGFLYKPV SIKSIHTQGI
0401: QPSFDELEKF KKPGDDMNGD MSSLNTLFSN RKKGHFMKGD AVIVVKGDLK NLEGWVEKVE DTTVHIRPKI SDLPKTLAFN EKELCKYFKP GDHVKVVSGV
0501: QEGTTGMVVK VDGHVLIILS DTTKEHIRVF ADHVVESSEI TTGITRIGDY ELHDLVLLDN LSFGVIIRVE TEAFQVLKGV PDRPEVVLVK LREIKSKIDR
0601: RTSAKDRFNN MVATKDVVRV VDGACKGTQG PVEHIHKGIL FIYDRHHLEH AGFICAKAQS CILVGGSTGG RRGNGMDAAD ARLGALRSPA SILQSPGRLP
0701: PRGPQMNYGG RFGGGGRGGR GHDALVGKCI KIKSGPYKGY RGRVKEVTGV LVRVELDSLM KIVTVKRDDI ADTPTVATPF REPRFSLGSE TPMHPSRTPL
0801: HPFQTPMRDP GATPIHDGMR TPMRSRAWAP MSPPRDNWED GNPDTWGSSP AYQPGTPPAR PYEAPTPGSG WANTPGVSYN DVPTPRESNY ANAPSPYVPS
0901: TPVGQPMTPN SAAYLPGTPG GQPMTPGNAG MDIMSPVMGG EGEGNWALPD VLVNVLAAGD EGPGVVREVL GDGTCRVALG SSGNGDIVTV LPTELEVIRP
1001: KKSDRIKIMN GTFRGFVGKL IGIDGSDGIV KLDDTYEVKI LDMVILAKLA A
0101: FDEEAQVDED EEEEDEGEGE DDFINDAGAD IPDDDAGRGS RSRHSIPMRD EEEDIDEIER QVRERYARST HIEYGEEAAD VEQQALLPSV KDPKLWMVKC
0201: AIGHERETAI CLMQKFIDRT DLQIKSVVAL DHLKNYIYVE AEKEAHVKEA CKGLRNIYSS AKITLVPIKE MADVLYVESK NVDLARDTWV RMKLGVYKGD
0301: LAKVVDVDNV RQRVTVKLIP RIDLQVLASK LEGRVVAKKK TFVPPPRFFN IDEAREMHIR VERRRDKDSG EYFEMVDGLM FKDGFLYKPV SIKSIHTQGI
0401: QPSFDELEKF KKPGDDMNGD MSSLNTLFSN RKKGHFMKGD AVIVVKGDLK NLEGWVEKVE DTTVHIRPKI SDLPKTLAFN EKELCKYFKP GDHVKVVSGV
0501: QEGTTGMVVK VDGHVLIILS DTTKEHIRVF ADHVVESSEI TTGITRIGDY ELHDLVLLDN LSFGVIIRVE TEAFQVLKGV PDRPEVVLVK LREIKSKIDR
0601: RTSAKDRFNN MVATKDVVRV VDGACKGTQG PVEHIHKGIL FIYDRHHLEH AGFICAKAQS CILVGGSTGG RRGNGMDAAD ARLGALRSPA SILQSPGRLP
0701: PRGPQMNYGG RFGGGGRGGR GHDALVGKCI KIKSGPYKGY RGRVKEVTGV LVRVELDSLM KIVTVKRDDI ADTPTVATPF REPRFSLGSE TPMHPSRTPL
0801: HPFQTPMRDP GATPIHDGMR TPMRSRAWAP MSPPRDNWED GNPDTWGSSP AYQPGTPPAR PYEAPTPGSG WANTPGVSYN DVPTPRESNY ANAPSPYVPS
0901: TPVGQPMTPN SAAYLPGTPG GQPMTPGNAG MDIMSPVMGG EGEGNWALPD VLVNVLAAGD EGPGVVREVL GDGTCRVALG SSGNGDIVTV LPTELEVIRP
1001: KKSDRIKIMN GTFRGFVGKL IGIDGSDGIV KLDDTYEVKI LDMVILAKLA A
0001: MPRSRDEDDE LDGDYEALDL EEEEEEDEEE EEERGRGGGG SRRKRGRSNF IDDYAEEDSQ EEDDDDEDYG SSRGGKGAAS KRKKPSASIF LDREAHQVDD
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P
Arabidopsis Description
GTA02Putative transcription elongation factor SPT5 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.