Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d037142_P001 | Maize | cytosol | 91.9 | 92.79 |
| TraesCS7B01G073100.1 | Wheat | cytosol | 88.76 | 88.68 |
| Zm00001d044971_P005 | Maize | cytosol, nucleus, plastid | 90.76 | 88.4 |
| Os06t0208300-01 | Rice | cytosol | 24.48 | 88.32 |
| TraesCS7A01G168300.1 | Wheat | nucleus | 88.19 | 88.19 |
| TraesCS7D01G169200.1 | Wheat | cytosol | 88.1 | 87.93 |
| HORVU7Hr1G035280.12 | Barley | cytosol | 87.14 | 86.81 |
| GSMUA_Achr3P08080_001 | Banana | cytosol | 72.67 | 75.84 |
| OQU85804 | Sorghum | cytosol | 67.62 | 70.09 |
| VIT_18s0001g15400.t01 | Wine grape | cytosol | 67.14 | 68.18 |
| KRH53382 | Soybean | nucleus | 67.05 | 67.76 |
| KRH64551 | Soybean | nucleus | 67.71 | 67.71 |
| Solyc04g064700.2.1 | Tomato | nucleus | 65.33 | 65.96 |
| Bra000641.1-P | Field mustard | cytosol | 61.71 | 62.25 |
| Bra037857.1-P | Field mustard | cytosol | 14.0 | 58.57 |
| PGSC0003DMT400063939 | Potato | cytoskeleton, cytosol, peroxisome | 13.52 | 57.96 |
| Bra022968.1-P | Field mustard | nucleus | 54.0 | 55.59 |
| Bra037858.1-P | Field mustard | cytosol | 4.38 | 55.42 |
| AT4G08360.1 | Thale cress | cytosol | 5.9 | 43.97 |
| CDY36202 | Canola | cytosol, extracellular | 5.81 | 43.26 |
| CDY36200 | Canola | peroxisome | 0.57 | 31.58 |
| OQU78267 | Sorghum | nucleus | 25.14 | 16.59 |
Protein Annotations
| MapMan:15.3.6.3.2 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | UniProt:C5Z6E1 | ncoils:Coil | EnsemblPlants:EER88041 |
| ProteinID:EER88041 | ProteinID:EER88041.2 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0003824 | GO:GO:0004190 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0006412 |
| GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0019538 | GO:GO:0030163 | GO:GO:0032784 | InterPro:IPR014722 | InterPro:IPR036735 |
| InterPro:KOW | InterPro:NGN_dom | InterPro:NGN_dom_sf | PFAM:PF00467 | PFAM:PF03439 | PFAM:PF11942 |
| PIRSF:PIRSF036945 | ScanProsite:PS01108 | PANTHER:PTHR11125 | PANTHER:PTHR11125:SF7 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L24/26_CS |
| SMART:SM00738 | SMART:SM00739 | EnsemblPlantsGene:SORBI_3010G078900 | SUPFAM:SSF50104 | InterPro:Spt5_N | InterPro:TF_Spt5 |
| InterPro:TF_Spt5_NGN-domain | InterPro:Translation_prot_SH3-like_sf | UniParc:UPI0007F2A428 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr10:-:6623408..6633523
Molecular Weight (calculated)
115657.0 Da
IEP (calculated)
5.016
GRAVY (calculated)
-0.619
Length
1050 amino acids
Sequence
(BLAST)
(BLAST)
0001: MARRGHDDDD EIEEEEDEEE AYDLDEEEEE DEEDDYEEEA RRGKASRSGG AGGGKGGGGG RKRSREDNFI DDSAIEDDDE EDDDDDGGGR PRKKGGGGVR
0101: GFFDEEAQVD EDEEEEDEGE GEDDFINDAG ADLPDEDVVR GSRRHSIPMR DEEEDIDEIE RQVRERYARS THIEYGEEAA EVEQQALLPS VKDPKLWMVK
0201: CAIGHERETA ICLMQKYIDR GDLQIKSVVA LDHLKNYIYV EAEKEAHVKE ACKGLRNIYA SAKITLVPIK EMADVLSVES KSVDLSRDSW VRMKLGIYKG
0301: DLAKVVDVDN VRQRVDVKLI PRIDLQALAS KLEGREAVKK KAFVPPPRFF NIDEAREMHI RVERRRDKES GEYFEWVDNL KFKDGFLYKS VSTKSIHTNN
0401: IQPTFDELEK FKKPGEDMNG DMASLSTLFA NRKKGHFMKG DAVIVVKGDL KNLEGWVEKV EDETVHIRPK ISDLPKTLAF NEKELCKYFK PGDHVKVISG
0501: VQEGATGMVV KVEGHVLIIL SDTTKEHIRV FADHVVESSE ITTGITRIGD YELHDLVLLD NLSFGVIIRV EAEAFQVLKG VPDRPEVVLV KLREIKSKID
0601: RRSSAKDRSN NIISAKDVVR VIEGACKGKQ GPVEHIHKGI LFIYDRHHLE HAGFICAKAQ SCLLVGGSAG GRRGNGMDTA DARLGALRSS ASILQSPGRL
0701: PPRGPNMNYG GRFGGGRGGR GHDALVGKCI KIKSGPYKGY RGRVKEVTGA LVRVELDSLM KIVTVKRDDI ADTPTVATPF REPRYSLGGE TPMHPSRTPH
0801: HAYQTPMRDP GATPIHDGMR TPMRSRAWAP MSPPRDNWED GNPATWGSSP AYQPGTPQAR PYEAPTPGSG WANTPGVSFN DAPTPRDNYA NAPSPYVPST
0901: PVGQPMTPNS AAYLPGTPGG QPMTPGTVGL DAMSPILGGE GDGTWLLPDV MVNVLRGGDD GPGVVREVLG DGSCRVALGS SGNGDMVTVL PNEVEVIRPK
1001: KSDKIKILNG NFRGYTGKLI GIDGSDGIVR LDDTYEVKIL DMVILAKLAT
0101: GFFDEEAQVD EDEEEEDEGE GEDDFINDAG ADLPDEDVVR GSRRHSIPMR DEEEDIDEIE RQVRERYARS THIEYGEEAA EVEQQALLPS VKDPKLWMVK
0201: CAIGHERETA ICLMQKYIDR GDLQIKSVVA LDHLKNYIYV EAEKEAHVKE ACKGLRNIYA SAKITLVPIK EMADVLSVES KSVDLSRDSW VRMKLGIYKG
0301: DLAKVVDVDN VRQRVDVKLI PRIDLQALAS KLEGREAVKK KAFVPPPRFF NIDEAREMHI RVERRRDKES GEYFEWVDNL KFKDGFLYKS VSTKSIHTNN
0401: IQPTFDELEK FKKPGEDMNG DMASLSTLFA NRKKGHFMKG DAVIVVKGDL KNLEGWVEKV EDETVHIRPK ISDLPKTLAF NEKELCKYFK PGDHVKVISG
0501: VQEGATGMVV KVEGHVLIIL SDTTKEHIRV FADHVVESSE ITTGITRIGD YELHDLVLLD NLSFGVIIRV EAEAFQVLKG VPDRPEVVLV KLREIKSKID
0601: RRSSAKDRSN NIISAKDVVR VIEGACKGKQ GPVEHIHKGI LFIYDRHHLE HAGFICAKAQ SCLLVGGSAG GRRGNGMDTA DARLGALRSS ASILQSPGRL
0701: PPRGPNMNYG GRFGGGRGGR GHDALVGKCI KIKSGPYKGY RGRVKEVTGA LVRVELDSLM KIVTVKRDDI ADTPTVATPF REPRYSLGGE TPMHPSRTPH
0801: HAYQTPMRDP GATPIHDGMR TPMRSRAWAP MSPPRDNWED GNPATWGSSP AYQPGTPQAR PYEAPTPGSG WANTPGVSFN DAPTPRDNYA NAPSPYVPST
0901: PVGQPMTPNS AAYLPGTPGG QPMTPGTVGL DAMSPILGGE GDGTWLLPDV MVNVLRGGDD GPGVVREVLG DGSCRVALGS SGNGDMVTVL PNEVEVIRPK
1001: KSDKIKILNG NFRGYTGKLI GIDGSDGIVR LDDTYEVKIL DMVILAKLAT
0001: MPRSRDEDDE LDGDYEALDL EEEEEEDEEE EEERGRGGGG SRRKRGRSNF IDDYAEEDSQ EEDDDDEDYG SSRGGKGAAS KRKKPSASIF LDREAHQVDD
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P
Arabidopsis Description
GTA02Putative transcription elongation factor SPT5 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.