Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G168300.1 | Wheat | nucleus | 98.29 | 98.48 |
| TraesCS7B01G073100.1 | Wheat | cytosol | 97.34 | 97.43 |
| HORVU7Hr1G035280.12 | Barley | cytosol | 96.1 | 95.92 |
| Zm00001d047048_P001 | Maize | cytosol, mitochondrion, peroxisome | 12.36 | 89.04 |
| EER88041 | Sorghum | nucleus | 87.93 | 88.1 |
| Zm00001d037142_P001 | Maize | cytosol | 87.07 | 88.08 |
| Os06t0208300-01 | Rice | cytosol | 24.14 | 87.29 |
| Zm00001d044971_P005 | Maize | cytosol, nucleus, plastid | 83.94 | 81.91 |
| GSMUA_Achr3P08080_001 | Banana | cytosol | 72.34 | 75.65 |
| TraesCS6D01G304800.1 | Wheat | nucleus | 67.78 | 68.56 |
| VIT_18s0001g15400.t01 | Wine grape | cytosol | 65.97 | 67.12 |
| KRH53382 | Soybean | nucleus | 66.06 | 66.89 |
| KRH64551 | Soybean | nucleus | 66.35 | 66.48 |
| Solyc04g064700.2.1 | Tomato | nucleus | 63.78 | 64.52 |
| Bra000641.1-P | Field mustard | cytosol | 60.93 | 61.58 |
| Bra037857.1-P | Field mustard | cytosol | 14.16 | 59.36 |
| PGSC0003DMT400063939 | Potato | cytoskeleton, cytosol, peroxisome | 12.93 | 55.51 |
| Bra022968.1-P | Field mustard | nucleus | 52.76 | 54.41 |
| Bra037858.1-P | Field mustard | cytosol | 4.18 | 53.01 |
| CDY36202 | Canola | cytosol, extracellular | 6.37 | 47.52 |
| AT4G08360.1 | Thale cress | cytosol | 5.99 | 44.68 |
| CDY36200 | Canola | peroxisome | 0.57 | 31.58 |
| TraesCS1D01G325500.1 | Wheat | nucleus | 21.29 | 16.06 |
Protein Annotations
| MapMan:15.3.6.3.2 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0032784 | InterPro:IPR014722 | InterPro:IPR036735 |
| InterPro:KOW | InterPro:NGN_dom | InterPro:NGN_dom_sf | PFAM:PF00467 | PFAM:PF03439 | PFAM:PF11942 |
| PIRSF:PIRSF036945 | ScanProsite:PS01108 | PANTHER:PTHR11125 | PANTHER:PTHR11125:SF7 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L24/26_CS |
| SMART:SM00738 | SMART:SM00739 | SUPFAM:SSF50104 | InterPro:Spt5_N | InterPro:TF_Spt5 | InterPro:TF_Spt5_NGN-domain |
| EnsemblPlantsGene:TraesCS7D01G169200 | EnsemblPlants:TraesCS7D01G169200.1 | InterPro:Translation_prot_SH3-like_sf | TIGR:cd06081 | TIGR:cd06082 | TIGR:cd06083 |
| TIGR:cd06084 | TIGR:cd06085 | TIGR:cd06086 | TIGR:cd09888 | SEG:seg | : |
Description
No Description!
Coordinates
chr7D:-:119892630..119901189
Molecular Weight (calculated)
115925.0 Da
IEP (calculated)
5.004
GRAVY (calculated)
-0.563
Length
1052 amino acids
Sequence
(BLAST)
(BLAST)
0001: MARRGRDDDD DEVEEEEEDE EEAYDLDDEE EDEGDDYEEE ARGRGKAASR SRAPAGGGGV RKRSRQDNFI DDSAIEDEDE DEEDDGGSRP RKKGGGGVRG
0101: FFDEEAQVDE DEEEEDEGEG EDDFINDAGA DIPDDDAGRG SRSRHSIPMR DEEEDIDEIE RQVRERYARS THIEYGEEAA DVEQQALLPS VKDPKLWMVK
0201: CAIGHERETA ICLMQKFIDR TDLQIKSVVA LDHLKNYIYV EAEKEAHVKE ACKGLRNIYA SAKITLVPIK EMADVLYVES KNVDLARDTW VRMKLGVYKG
0301: DLAKVVDVDN VRQRVTVKLI PRIDLQVLAS KLEGRVVAKK KTFVPPPRFF NIDEAREMHI RVERRRDKDS GEYFEMVDGL MFKDGFLYKP VSIKSIHTQG
0401: IQPSFDELEK FKKPGDDMNG DMSSLNTLFS NRKKGHFMKG DAVIVVKGDL KNLEGWVEKV EDTTVHIRPK ISDLPKTLAF NEKELCKYFK PGDHVKVVSG
0501: VQEGTTGMVV KVDGHVLIIL SDTTKEHIRV FADHVVESSE ITTGITRIGD YELHDLVLLD NLSFGVIIRV ETEAFQVLKG VPDRPEVVLV KLREIKSKID
0601: RRTSAKDKFN NMVATKDVVR VVEGACKGTQ GPVEHIHKGI LFIYDRHHLE HAGFICAKAQ SCILVGGSTG GRRGNGMDAA DARMGALRSP ASILQSPGRL
0701: PPRGPQMNYG GRFGGGGRGG RGHDALVGKC IKIKSGPYKG YRGRVKEVTG VLVRVELDSL MKIVTVKRDD IADTPTVATP FREPRFSLGS ETPMHPSRTP
0801: LHPFQTPMRD PGATPIHDGM RTPMRSRAWA PMSPPRDNWE DGNPDTWGSS PAYQPGTPPA RPYEAPTPGS GWANTPGVSY NDVPTPREGN YANAPSPYVP
0901: STPVGQPMTP NSAAYLPGTP GGQPMTPGNA GMDIMSPVIG GEGEVNWALP DVLVNVLAAG DEGPGVVREV LGDGTCRVAL GSSGNGDIVT VLPSELEVIR
1001: PKKSDRIKIM NGTFRGFVGK LIGIDGSDGI VKLDDTYEVK ILDMVILAKL AA
0101: FFDEEAQVDE DEEEEDEGEG EDDFINDAGA DIPDDDAGRG SRSRHSIPMR DEEEDIDEIE RQVRERYARS THIEYGEEAA DVEQQALLPS VKDPKLWMVK
0201: CAIGHERETA ICLMQKFIDR TDLQIKSVVA LDHLKNYIYV EAEKEAHVKE ACKGLRNIYA SAKITLVPIK EMADVLYVES KNVDLARDTW VRMKLGVYKG
0301: DLAKVVDVDN VRQRVTVKLI PRIDLQVLAS KLEGRVVAKK KTFVPPPRFF NIDEAREMHI RVERRRDKDS GEYFEMVDGL MFKDGFLYKP VSIKSIHTQG
0401: IQPSFDELEK FKKPGDDMNG DMSSLNTLFS NRKKGHFMKG DAVIVVKGDL KNLEGWVEKV EDTTVHIRPK ISDLPKTLAF NEKELCKYFK PGDHVKVVSG
0501: VQEGTTGMVV KVDGHVLIIL SDTTKEHIRV FADHVVESSE ITTGITRIGD YELHDLVLLD NLSFGVIIRV ETEAFQVLKG VPDRPEVVLV KLREIKSKID
0601: RRTSAKDKFN NMVATKDVVR VVEGACKGTQ GPVEHIHKGI LFIYDRHHLE HAGFICAKAQ SCILVGGSTG GRRGNGMDAA DARMGALRSP ASILQSPGRL
0701: PPRGPQMNYG GRFGGGGRGG RGHDALVGKC IKIKSGPYKG YRGRVKEVTG VLVRVELDSL MKIVTVKRDD IADTPTVATP FREPRFSLGS ETPMHPSRTP
0801: LHPFQTPMRD PGATPIHDGM RTPMRSRAWA PMSPPRDNWE DGNPDTWGSS PAYQPGTPPA RPYEAPTPGS GWANTPGVSY NDVPTPREGN YANAPSPYVP
0901: STPVGQPMTP NSAAYLPGTP GGQPMTPGNA GMDIMSPVIG GEGEVNWALP DVLVNVLAAG DEGPGVVREV LGDGTCRVAL GSSGNGDIVT VLPSELEVIR
1001: PKKSDRIKIM NGTFRGFVGK LIGIDGSDGI VKLDDTYEVK ILDMVILAKL AA
0001: MPRSRDEDDE LDGDYEALDL EEEEEEDEEE EEERGRGGGG SRRKRGRSNF IDDYAEEDSQ EEDDDDEDYG SSRGGKGAAS KRKKPSASIF LDREAHQVDD
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P
0101: EDEEEEDEAE DDFIVDNGTD LPDERGDRRY ERRFLPRDEN DEDVEDLERR IQERFSSRHH EEYDEEATEV EQQALLPSVR DPKLWMVKCA IGREREVAVC
0201: LMQKFIDRGA DLQIRSVVAL DHLKNFIYVE ADKEAHVKEA IKGMRNIYAN QKILLVPIRE MTDVLSVESK AIDLSRDTWV RMKIGTYKGD LAKVVDVDNV
0301: RQRVTVKLIP RIDLQALASK LDGREVSKKK AFVPPPRFMN IDEARELHIR VERRRDHMTG DYFENIGGML FKDGFHYKQV SLKSITVQNV TPTFDELEKF
0401: NKPSENGEGD FGGLSTLFAN RKKGHFMKGD AVIVIKGDLK NLKGWVEKVD EENVLIRSEV KGLPDPLAVN ERELCKYFEP GNHVKVVSGT HEGATGMVVK
0501: VDQHVLIILS DTTKEHVRVF ADHVVESSEV TTGVTKIGDY ELHDLVLLDN LSFGVIIRLE NEAFQVLKGV PDRPEVALVK LREIKCKLEK KINVQDRYKN
0601: VIAVKDDVRV IEGPSKGKQG PVKHIYKGVL FIYDRHHLEH AGFICAKCTS CIVVGGSRSG ANRNGGDSLS RYGNFKAPAP VPSSPGRFQR GRGGGYNNSG
0701: GRHGGGRGRG DDSLLGTTVK IRLGPFKGYR GPVVEVKGNS VRVELEMKIV TVDRGAISDN VATTPFRDTS RYSMGSETPM HPSRTPLHPY MTPMRDSGAT
0801: PIHDGMRTPM RDRAWNPYTP MSPPRDNWED GNPGSWGTSP QYQPGSPPSR AYEAPTPGSG WASTPGGSYS DAGTPRDHGS AYANAPSPYL PSTPGQPMTP
0901: SSASYLPGTP GGQPMTPGTG LDVMSPVIGG DAEAWFMPDI LVDIHKAGED TDVGVIRDVS DGTCKVSLGS SGEGDTIMAL PSELEIIPPR KSDRVKIVGG
1001: QYRGSTGKLI GIDGSDGIVK IDDNLDVKIL DLALLAKFVQ P
Arabidopsis Description
GTA02Putative transcription elongation factor SPT5 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9STN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.