Factsheet for Zm00001d047048_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

plastid 1
cytosol 1
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044436_P001	Maize	extracellular, mitochondrion	63.01	76.03
Bra037857.1-P	Field mustard	cytosol	30.14	17.53
Zm00001d037142_P001	Maize	cytosol	94.52	13.27
Zm00001d044971_P005	Maize	cytosol, nucleus, plastid	94.52	12.8
GSMUA_Achr3P08080_001	Banana	cytosol	85.62	12.43
TraesCS7A01G168300.1	Wheat	nucleus	89.04	12.38
TraesCS7B01G073100.1	Wheat	cytosol	89.04	12.37
TraesCS7D01G169200.1	Wheat	cytosol	89.04	12.36
HORVU7Hr1G035280.12	Barley	cytosol	88.36	12.24
VIT_18s0001g15400.t01	Wine grape	cytosol	81.51	11.51
KRH53382	Soybean	nucleus	78.77	11.07
KRH64551	Soybean	nucleus	78.08	10.86
Bra000641.1-P	Field mustard	cytosol	74.66	10.47
Solyc04g064700.2.1	Tomato	nucleus	71.92	10.1
Bra022968.1-P	Field mustard	nucleus	66.44	9.51
Zm00001d010719_P002	Maize	nucleus	9.59	0.88
Zm00001d038644_P004	Maize	nucleus	9.59	0.87
Os06t0208300-01	Rice	cytosol	0.0	0.0
CDY36202	Canola	cytosol, extracellular	0.0	0.0
CDY36200	Canola	peroxisome	0.0	0.0
Bra037858.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

EntrezGene:103640215	Gene3D:2.30.30.30	MapMan:35.1	UniProt:A0A1D6P6J8	ProteinID:AQL05479.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0003746	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR014722	InterPro:KOW	PFAM:PF00467	ScanProsite:PS01108	PANTHER:PTHR11125
PANTHER:PTHR11125:SF7	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L24/26_CS	SMART:SM00739	SUPFAM:SSF50104	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI0004DE94F6	EnsemblPlantsGene:Zm00001d047048	EnsemblPlants:Zm00001d047048_P001	EnsemblPlants:Zm00001d047048_T001	:	:

Description

Putative transcription elongation factor SPT5 homolog 1

Coordinates

chr9:-:116616211..116616862

Molecular Weight (calculated)

16252.9 Da

IEP (calculated)

6.629

GRAVY (calculated)

-0.040

Length

146 amino acids

Sequence
(BLAST)

001: MNGDMASLST LLANRKKGHF MKGDAVIVIK GDLKNLEGWV EKVEDETVHI RPKISDLPKT LAFNEKELCK YFKPGDHVKV ILGVQEGATG MVVKVEGHVL
101: IILSDTTKEH IRVFVDHVVE SSEITTGITR IGDYELHDLV LLCSKM

Best Arabidopsis Sequence Match ( AT2G34210.1 )
(BLAST)

001: MSQYSDDDYS HEDDSEMEDE DEEDEYEPRS SRKGRSGKKR GRSNSDSDGR RGSKKKSSGS AFIDWEVEVD DDVEDDDDDV DVEDGKQQLK FGDFSLCFIV
101: SGEADLPNED SDHRRQYYQR GFHPHEEDVD ELEKRTLERL STKYAKDDYE LDDVNDVDQQ ALLPSVRDPK LWLVKCAIGR EREVAVCLMQ KIVDRGSEFK
201: IRSAIALDHL QNYVYIEADM EAHVKEAIKG MRNIYANQKI LLVPIKEMTA VLSVESKAID LSRDSWVRMK LGIYKGDLAQ VVDVDNVRKR VTVKLIPRID
301: LQALANKLEG TENVKKKAFA PPPRFMNIDE ARELHIRVEH RRDPMTGDYF ENIGGMLFKD GFLYKKVSTK SIAAQNVTPT FDELERFKRP NENGEIDFVD
401: ESTLFANRKK GHFMKGDAVI VIKGDLKNLK GWIEKVDEEN VLIRSEMKDL PNPIAVNGRE LCKYFEPGNF VKVVSGIHEG GTGMIVKVDQ HMLIILSDTT
501: KEHICVFADH VAKSAEVTKG VTKIGDYELH DLVILSDFSF GVILKLDSEA IQILKGVPDS SEVSIVKASE IKYKIWKKIN VQDRYKNVVA VKDVVRVIEG
601: PSKGKQGPVV QIYKGVLFIH DRHNLEHTGF ICTRCSSCVL AGGNFKTPAL VPPSPRRFQR ADMGYNPGAG GRHQGGRGRR GDDHLVGTYV KIRLGPFKGY
701: SGRLVEVKDK LVRVELEAKI VTVERKAISD MTDNVVATPQ YNMGSQTPMH PSRTPLHPCM TPMRHSGATP IHDGMRTPMR GRAWNPYMPM SPPRDNWEDG
801: NPGSWGTSPY EAATPGSDWG SSTPGRSSYR DAGTPINNAN APSPMTPSST SYLPTTPGGQ AMTPGTDLDV MSLDIGGDAE TRFIPGILVN VHKAGEDRNP
901: GVIRDVLPDG SCVVALGHRG EGETIRATQN KVSLVCPKKN ERVKILGGKY CGSTAKVIGE DGQDGIVKLD ESLDIKILKL TILAKLVHE

Arabidopsis Description

Putative transcription elongation factor SPT5 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:O80770]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.