Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d008249_P012 | |
| Zm00001d039214_P025 | |
| Zm00001d040429_P012 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G04290.1 | Zm00001d008249_P012 | AT2G27040.1 | 19410546 |
| AT5G04290.1 | Zm00001d039214_P025 | AT2G27040.1 | 19410546 |
| AT5G04290.1 | Zm00001d040429_P012 | AT2G27040.1 | 19410546 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU78267 | Sorghum | nucleus | 57.35 | 57.39 |
| VIT_14s0006g02120.t01 | Wine grape | cytosol | 4.46 | 57.26 |
| Zm00001d038644_P004 | Maize | nucleus | 56.85 | 56.25 |
| GSMUA_Achr7P16990_001 | Banana | nucleus, plastid | 19.47 | 49.05 |
| VIT_00s0131g00430.t01 | Wine grape | cytosol | 4.77 | 48.1 |
| VIT_13s0019g04950.t01 | Wine grape | nucleus | 17.02 | 43.64 |
| TraesCS1A01G324800.1 | Wheat | nucleus | 40.7 | 41.89 |
| TraesCS1D01G325500.1 | Wheat | nucleus | 36.37 | 41.51 |
| TraesCS1B01G337800.2 | Wheat | nucleus | 39.82 | 40.36 |
| HORVU1Hr1G075270.8 | Barley | nucleus, plastid | 40.33 | 40.25 |
| Os05t0506200-01 | Rice | nucleus | 13.82 | 37.54 |
| CDY41384 | Canola | nucleus | 15.89 | 33.51 |
| VIT_19s0093g00140.t01 | Wine grape | plastid | 4.59 | 29.08 |
| CDX70245 | Canola | nucleus | 20.16 | 28.46 |
| KRH35991 | Soybean | nucleus | 24.12 | 26.45 |
| KRG90770 | Soybean | nucleus | 23.24 | 24.75 |
| Zm00001d037142_P001 | Maize | cytosol | 15.7 | 24.04 |
| Solyc11g008150.1.1 | Tomato | nucleus | 22.36 | 23.59 |
| Zm00001d044971_P005 | Maize | cytosol, nucleus, plastid | 15.14 | 22.36 |
| Bra009470.1-P | Field mustard | nucleus | 21.48 | 22.16 |
| AT5G04290.1 | Thale cress | nucleus | 20.16 | 21.5 |
| Zm00001d047048_P001 | Maize | cytosol, mitochondrion, peroxisome | 0.88 | 9.59 |
| Zm00001d044436_P001 | Maize | extracellular, mitochondrion | 0.57 | 7.44 |
Protein Annotations
| EntrezGene:103635834 | MapMan:12.5.1.5 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | UniProt:A0A1D6FT45 | ProteinID:AQK94714.1 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR014722 | InterPro:IPR036735 | InterPro:KOW | InterPro:NGN_dom_sf | PFAM:PF03439 | PANTHER:PTHR11125 |
| PANTHER:PTHR11125:SF8 | InterPro:Rib_L2_dom2 | SMART:SM00739 | InterPro:TF_Spt5_NGN-domain | UniParc:UPI0004DEBE4A | EnsemblPlantsGene:Zm00001d010719 |
| EnsemblPlants:Zm00001d010719_P002 | EnsemblPlants:Zm00001d010719_T002 | SEG:seg | : | : | : |
Description
Protein RNA-directed DNA methylation 3
Coordinates
chr8:-:125575872..125588157
Molecular Weight (calculated)
170708.0 Da
IEP (calculated)
5.200
GRAVY (calculated)
-1.018
Length
1592 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAVKGKGKQV AAESPGPGAG AGGASGSGGK RRMASSDAGA GPSSSSAAKR RRRAGVLQFV DDVAGVDDDY EEDELESEDD TDDGFFTGGE HAQNLSHKRT
0101: ERSHPLPFLV KEEELSGDEL EEFIKNRYSN RVKYAADRSY SREDDDIFSM DCALKEPTIW RVKCMVGRER QMAFCFMQKF VDLRKIGTKV PIITAFALDH
0201: IRGFVFVEAE KACDVTEACK GFCSVYTSRI TSVPAAEVPS LLSSRTKPFE ISRGTWIRMK NGNYKGDLAQ VVSVDDGRKK VMIKIVPRVD LHAISKKFGG
0301: AVSLKGAAVP APRLISSQEL EFFRPHIEIK RDRQTGEVFE VLDGLMFKDG FLYKKVALSS LIYWGIQPTE TELLKFSSSP SNRASADDLD WLSGMYGSKK
0401: RNLPEKRDME SSSSKIRSSK ASDLKASTST ENYDENDEFN LHDLVLYGRK DFGVIVAVEK DGFRILKGGP EGSAVKVRKQ DIKKGCVDKM FTAVDHQKKT
0501: ISINDTVNVV EGPFQGKQGV VKHLYLGILF IYNESESENC GFFCAQSGSC EKIRKGLGSS TTESSDFTTP MFPEPAYEQN GHRDTERPYR STREQLFSIG
0601: QMLRIRKGPL KGYLCRVVRI FRNDVTVKLD SLLKIVTVQA DLLSVPANRG DNLSGAPASK FGSQDTSFFG SEAGKTSWDN GLPSFGSDSW QPFSSSTLSV
0701: QNAGGESEAD PWSKKTSAKD DSDPWGKKTD GDSDRWGKKT DGDSDPWGKE AVSAADGDSN PWGKETVPSA AGDSDPWGKK VVSSADGDSD SWGKKATSSA
0801: VDTEKEGSGG TAWDKQAGVG GSDAAGSSWD RAVVNESEKS DNWGEACRVM DMGTGAEADT DPWGSKVKAV DMEGPNNWEK ATVPPNNKLE DVSQGWGQPK
0901: GNSTEDQAID NVSKDVDNNR ACDSSLPVTE DGTWGKSKDN SCGGAGGAGG WDVSVGNWNK SSVVADAQDE GWGKGNWSSA ESEETNNQSG NWNKTGASDQ
1001: AGYNNWDKPK SFGGNGWNKG DDQNSSWNRP ENFGGGRGFG RGQGRGRGQQ SGYFNGRNDQ GSWKKSWGSD NAERPSWRSD NQVDNEAGES GGYRGRGRGG
1101: RGQYGGRGKD NGWRNDDRSN SGFGRENNSG DGPKWGGGGN WNATNPPSSS VGTKSYGQNQ PFTWNNSEDN KPSVGEQGDP WASKVSSTED TEQQNDSWSS
1201: KMISGGAEDT SGGWDTKVKD SSCNDGGEGL QNDPWANKIG SNEGKEQETD PWASKMSSTV CADDKKGSWN TTAKGIPSKE KADDPWNSKG GNDDSKKTDT
1301: WGAGSSGGDQ ELSWSKPNFS LGDQESTWNN PRFSDDDNAN NRGGFGRGNR GRGRGRNFGD GGGSSWNGGN RNDESGGGRS GEPWNRRDFD GGGGRGRGRF
1401: GRGDRNQGNN FGSGDGGSWG SGRGNGGRGG YRNWNDNNER SFGEGGGWSQ SQSSDWNANK GNGEGNQAFS KSKPSWEAQN TSGRDGQAGK GDANNSWSKN
1501: RSSPSSAWGA PSGGAGGRGS WGKSNEDGWN SAGGSAKEKP AWGGGSEAST KKEDKGGEGN GSQGGGGVSS WDKGADDAWN GNTGSDIGSG GW
0101: ERSHPLPFLV KEEELSGDEL EEFIKNRYSN RVKYAADRSY SREDDDIFSM DCALKEPTIW RVKCMVGRER QMAFCFMQKF VDLRKIGTKV PIITAFALDH
0201: IRGFVFVEAE KACDVTEACK GFCSVYTSRI TSVPAAEVPS LLSSRTKPFE ISRGTWIRMK NGNYKGDLAQ VVSVDDGRKK VMIKIVPRVD LHAISKKFGG
0301: AVSLKGAAVP APRLISSQEL EFFRPHIEIK RDRQTGEVFE VLDGLMFKDG FLYKKVALSS LIYWGIQPTE TELLKFSSSP SNRASADDLD WLSGMYGSKK
0401: RNLPEKRDME SSSSKIRSSK ASDLKASTST ENYDENDEFN LHDLVLYGRK DFGVIVAVEK DGFRILKGGP EGSAVKVRKQ DIKKGCVDKM FTAVDHQKKT
0501: ISINDTVNVV EGPFQGKQGV VKHLYLGILF IYNESESENC GFFCAQSGSC EKIRKGLGSS TTESSDFTTP MFPEPAYEQN GHRDTERPYR STREQLFSIG
0601: QMLRIRKGPL KGYLCRVVRI FRNDVTVKLD SLLKIVTVQA DLLSVPANRG DNLSGAPASK FGSQDTSFFG SEAGKTSWDN GLPSFGSDSW QPFSSSTLSV
0701: QNAGGESEAD PWSKKTSAKD DSDPWGKKTD GDSDRWGKKT DGDSDPWGKE AVSAADGDSN PWGKETVPSA AGDSDPWGKK VVSSADGDSD SWGKKATSSA
0801: VDTEKEGSGG TAWDKQAGVG GSDAAGSSWD RAVVNESEKS DNWGEACRVM DMGTGAEADT DPWGSKVKAV DMEGPNNWEK ATVPPNNKLE DVSQGWGQPK
0901: GNSTEDQAID NVSKDVDNNR ACDSSLPVTE DGTWGKSKDN SCGGAGGAGG WDVSVGNWNK SSVVADAQDE GWGKGNWSSA ESEETNNQSG NWNKTGASDQ
1001: AGYNNWDKPK SFGGNGWNKG DDQNSSWNRP ENFGGGRGFG RGQGRGRGQQ SGYFNGRNDQ GSWKKSWGSD NAERPSWRSD NQVDNEAGES GGYRGRGRGG
1101: RGQYGGRGKD NGWRNDDRSN SGFGRENNSG DGPKWGGGGN WNATNPPSSS VGTKSYGQNQ PFTWNNSEDN KPSVGEQGDP WASKVSSTED TEQQNDSWSS
1201: KMISGGAEDT SGGWDTKVKD SSCNDGGEGL QNDPWANKIG SNEGKEQETD PWASKMSSTV CADDKKGSWN TTAKGIPSKE KADDPWNSKG GNDDSKKTDT
1301: WGAGSSGGDQ ELSWSKPNFS LGDQESTWNN PRFSDDDNAN NRGGFGRGNR GRGRGRNFGD GGGSSWNGGN RNDESGGGRS GEPWNRRDFD GGGGRGRGRF
1401: GRGDRNQGNN FGSGDGGSWG SGRGNGGRGG YRNWNDNNER SFGEGGGWSQ SQSSDWNANK GNGEGNQAFS KSKPSWEAQN TSGRDGQAGK GDANNSWSKN
1501: RSSPSSAWGA PSGGAGGRGS WGKSNEDGWN SAGGSAKEKP AWGGGSEAST KKEDKGGEGN GSQGGGGVSS WDKGADDAWN GNTGSDIGSG GW
0001: MDRKGKGKQV AGSDSYSGGQ KRKNSVEFRD EGLRIKKRKN PEVLQFFEES AEVGYYGGSS DEDDDGLGFL NDMEDEPEVE ESSKAGKGEK GKSSFVFPKE
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSNPWGGSKP TSDVSPTVAD DNTSAWANAA AENKPASASD QPGGWNPWGK TPASEAGTVS GWGDTSASNV EASSWEKQGA STSNVADLGS
0801: WGTHGGSSGG NKQDEDSVWG KLCEASESSQ KKEESSWGKK GGSDGESSWG NKDGNSSASK KDGVSWGQQD KGSDESKGGS AWSNQCGDFG SGKKKDGSSG
0901: WNKSAEDSNA NSKGVPDWGQ PNDGSSWGKK GDGAASWGKK DDGGSWGKKD DGNKDDGGSS WGKKDDGQKD DGGSSWEKKF DGGSSWGKKD DGGSSWGKKD
1001: DGGSLWGKKD DGGSSWGKED DGGSLWGKKD DGESSWGKKD DGESSWGKKD DGGSSWGKKD EGGYSEQTFD RGGRGFGGRR GGGRRGGRDQ FGRGSSFGNS
1101: EDPAPWSKPS GGSSWGKQDG DGGGSSWGKE NDAGGGSSWG KQDNGVGSSW GKQNDGSGGG SSWGKQNDAG GGSSWGKQDS GGDGSSWGKQ DGGGDSGSAW
1201: GKQNNTSGGS SWGKQSDAGG GSSWGKQDGG GGGSSWGKQD GGGGSGSAWG KQNETSNGSS WGKQNDSGGG SSWGKQDGGG GGSSWGKQND GGGGSSWGKQ
1301: GDGGSKPWNE HSGGGRGFGE RRGGGGFRGG RNQSGRGGRS FDGGRSSSWK TDNQENTWKS DQSGGSDWKK GWGEDSNNSK PSGSSAGGCA GNWPSWDTNS
1401: KKETNDKPGD DSKSAWGTSN DQVNTDNNND SWNKKPNNDV GTSGEADNAW GGKTNAVAPS PSGSAAWGTG DKKTGW
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSNPWGGSKP TSDVSPTVAD DNTSAWANAA AENKPASASD QPGGWNPWGK TPASEAGTVS GWGDTSASNV EASSWEKQGA STSNVADLGS
0801: WGTHGGSSGG NKQDEDSVWG KLCEASESSQ KKEESSWGKK GGSDGESSWG NKDGNSSASK KDGVSWGQQD KGSDESKGGS AWSNQCGDFG SGKKKDGSSG
0901: WNKSAEDSNA NSKGVPDWGQ PNDGSSWGKK GDGAASWGKK DDGGSWGKKD DGNKDDGGSS WGKKDDGQKD DGGSSWEKKF DGGSSWGKKD DGGSSWGKKD
1001: DGGSLWGKKD DGGSSWGKED DGGSLWGKKD DGESSWGKKD DGESSWGKKD DGGSSWGKKD EGGYSEQTFD RGGRGFGGRR GGGRRGGRDQ FGRGSSFGNS
1101: EDPAPWSKPS GGSSWGKQDG DGGGSSWGKE NDAGGGSSWG KQDNGVGSSW GKQNDGSGGG SSWGKQNDAG GGSSWGKQDS GGDGSSWGKQ DGGGDSGSAW
1201: GKQNNTSGGS SWGKQSDAGG GSSWGKQDGG GGGSSWGKQD GGGGSGSAWG KQNETSNGSS WGKQNDSGGG SSWGKQDGGG GGSSWGKQND GGGGSSWGKQ
1301: GDGGSKPWNE HSGGGRGFGE RRGGGGFRGG RNQSGRGGRS FDGGRSSSWK TDNQENTWKS DQSGGSDWKK GWGEDSNNSK PSGSSAGGCA GNWPSWDTNS
1401: KKETNDKPGD DSKSAWGTSN DQVNTDNNND SWNKKPNNDV GTSGEADNAW GGKTNAVAPS PSGSAAWGTG DKKTGW
Arabidopsis Description
RDM3Protein RNA-directed DNA methylation 3 [Source:UniProtKB/Swiss-Prot;Acc:F4JW79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.