Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G04290.1 | EES00570 | AT2G27040.1 | 19410546 |
| AT5G04290.1 | EES18816 | AT2G27040.1 | 19410546 |
| AT5G04290.1 | OQU86696 | AT2G27040.1 | 19410546 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d038644_P004 | Maize | nucleus | 60.47 | 59.79 |
| Zm00001d010719_P002 | Maize | nucleus | 57.39 | 57.35 |
| VIT_14s0006g02120.t01 | Wine grape | cytosol | 4.34 | 55.65 |
| GSMUA_Achr7P16990_001 | Banana | nucleus, plastid | 19.42 | 48.89 |
| VIT_00s0131g00430.t01 | Wine grape | cytosol | 4.53 | 45.57 |
| VIT_13s0019g04950.t01 | Wine grape | nucleus | 16.78 | 43.0 |
| TraesCS1A01G324800.1 | Wheat | nucleus | 40.79 | 41.95 |
| TraesCS1D01G325500.1 | Wheat | nucleus | 36.46 | 41.58 |
| TraesCS1B01G337800.2 | Wheat | nucleus | 39.66 | 40.17 |
| HORVU1Hr1G075270.8 | Barley | nucleus, plastid | 40.23 | 40.13 |
| Os05t0506200-01 | Rice | nucleus | 13.95 | 37.88 |
| CDY41384 | Canola | nucleus | 15.96 | 33.64 |
| VIT_19s0093g00140.t01 | Wine grape | plastid | 4.65 | 29.48 |
| CDX70245 | Canola | nucleus | 19.55 | 27.57 |
| KRH35991 | Soybean | nucleus | 23.7 | 25.96 |
| EER88041 | Sorghum | nucleus | 16.59 | 25.14 |
| KRG90770 | Soybean | nucleus | 23.38 | 24.88 |
| OQU85804 | Sorghum | cytosol | 15.59 | 24.48 |
| AT5G04290.1 | Thale cress | nucleus | 22.12 | 23.58 |
| Bra009470.1-P | Field mustard | nucleus | 22.82 | 23.53 |
| Solyc11g008150.1.1 | Tomato | nucleus | 22.25 | 23.46 |
Protein Annotations
| MapMan:12.5.1.5 | Gene3D:2.30.30.30 | Gene3D:3.30.70.940 | UniProt:A0A1Z5R3E8 | ncoils:Coil | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR014722 |
| InterPro:IPR036735 | InterPro:KOW | InterPro:NGN_dom_sf | EnsemblPlants:OQU78267 | ProteinID:OQU78267 | ProteinID:OQU78267.1 |
| PFAM:PF03439 | PANTHER:PTHR11125 | PANTHER:PTHR11125:SF8 | InterPro:Rib_L2_dom2 | SMART:SM00739 | EnsemblPlantsGene:SORBI_3009G190200 |
| InterPro:TF_Spt5_NGN-domain | UniParc:UPI000B425C35 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr9:+:54225287..54238202
Molecular Weight (calculated)
169841.0 Da
IEP (calculated)
5.221
GRAVY (calculated)
-0.996
Length
1591 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAVKGKGKQV AAESPGPGAG GASGSGGKRR KASGDAGAGP SSSSAAKRRR RAGVLQFVDD VAGVDDDYEE EEEDELELES EDDPDDGFFT GGEHVQNPSH
0101: KRTERSHPLP FLVKEEELSG DELEEFIKTR YSNSVKYAAD RSYSREDDDI FPNDCALKEP TIWRVKCMVG RERQMAFCFM QKFVDLRKIG TKVPIITAFA
0201: LDHIRGFVFV EAEKACDVTE ACKGFCSVYV SRITSVPAAE VPSLLSSRTK PFVLSRGTWV RMKNGNYKGD LAQVVIVDDG RKKVMIKIIP RVDLHAISKK
0301: FGGAVSLKEA AVPAPRLISS QELEFFRPHI EIKRDRQTGE VFEVLDGLMF KDGFLYKKVA LSSLIYWGIQ PTETELLKFS SSPTNRASAD DLDWLSGMYG
0401: SKKRNLPAER DMKPSSSKLK SSKTSDLKAS TSTENYDDND VFNLHDLVLY GRKDFGVIIA VEKDGFRILK GGPEGSAVTV RKQDIKKVCV DKMFTAVDHQ
0501: KKTISINDTV NVVDGPFQGN QGVVKHLYLG ILFIYNESES ENCGFFCAQS GSCEKIRKGL GSSTTESSDF PTPMFSEPTY EQNEHRDTER PYRSTREQLF
0601: SVGQMLRIRK GPLKGYLCRV VRIFRNDVTV KLDSLLKTVT VQADLLSVPA NRGDNLSGAP ASKFGSQDTS FFGSEAGKTS WDNGLPSFGS DSWQPFSSST
0701: APVQNAGGES EADPWCKKTS AEDDSGPWGK KTNGDSDAWG KEAVSSVDGD STPWGKETVP SAAGDSDPWG KKVVSSADGD SDPWGKKAAS SAVEVWNTSA
0801: IQKEGSSSNA WDKQAGVGGS DAAGSSWDRA VVNKESAKSD NWGEACRVMD MGTGADTDPW GSKVKAVDVE GPNSWEKATV PPDSKLEDAS QGWGQPKGNS
0901: TEDQTKDNVS KDVDNNRAWG SSLPVTEDGT WGKSKDNTCD GAGGAGGWDA SAANWTKSSV AGDAQNEGWG KGNWSSAKSE ETNNDIGNWN KAGASDQAGD
1001: SNWDKPKSFG GDGWNKGDDQ NSSWNRPGNF GGRGFGRGRG RDRGQESGDF NVRNDQRSWK NSWGGDNAER PSWRSDNQVD NEGGSGGYRG RGRGGRGQYG
1101: GRGRDNGWRN GDRSDSVFGR ESNSGDGAKW GGGGNWNATN PPSNQPWSSS GGTKSYGQNQ PSTLNNSEDN KQSVGEQGDP WASRVSATEG KEQQNDPWSS
1201: KMTSGGAEDT SGGWDTKAKD SSFNDGGEGL QNDPWANKIG SNEGKEQEND PWASKMSSTV GADDRNGSWN TTAKSTPSKE EADDRWNRKG GNDDSKKTDT
1301: WGAGSSGGNQ ESSWSKPNFS LGDQEPTWNN SRFGDDDNGN NRGGFGRGNR GRGRGRNFGD GGGSSWNGGN RNDESGGGRS GEPWNRRDFD GGRGRGRGRF
1401: GRGDRNQGNN FGSGDGGSWG SGRGDGGSWG SGAGDGGSWG SGRGNGGRSG YRNWNTSGGD DQAGKSNANN SWSQNRSSPS ILGQPSGDAN KSSTWGAPSG
1501: AAGGGGSWGK SNEDNWNPSG GSAKEKPSWG GGSGAPPKKE DGGAEGSGSQ GGGTGSTWDK AADGGTGSTW DKAADGAWNG NKGTDTGSGG W
0101: KRTERSHPLP FLVKEEELSG DELEEFIKTR YSNSVKYAAD RSYSREDDDI FPNDCALKEP TIWRVKCMVG RERQMAFCFM QKFVDLRKIG TKVPIITAFA
0201: LDHIRGFVFV EAEKACDVTE ACKGFCSVYV SRITSVPAAE VPSLLSSRTK PFVLSRGTWV RMKNGNYKGD LAQVVIVDDG RKKVMIKIIP RVDLHAISKK
0301: FGGAVSLKEA AVPAPRLISS QELEFFRPHI EIKRDRQTGE VFEVLDGLMF KDGFLYKKVA LSSLIYWGIQ PTETELLKFS SSPTNRASAD DLDWLSGMYG
0401: SKKRNLPAER DMKPSSSKLK SSKTSDLKAS TSTENYDDND VFNLHDLVLY GRKDFGVIIA VEKDGFRILK GGPEGSAVTV RKQDIKKVCV DKMFTAVDHQ
0501: KKTISINDTV NVVDGPFQGN QGVVKHLYLG ILFIYNESES ENCGFFCAQS GSCEKIRKGL GSSTTESSDF PTPMFSEPTY EQNEHRDTER PYRSTREQLF
0601: SVGQMLRIRK GPLKGYLCRV VRIFRNDVTV KLDSLLKTVT VQADLLSVPA NRGDNLSGAP ASKFGSQDTS FFGSEAGKTS WDNGLPSFGS DSWQPFSSST
0701: APVQNAGGES EADPWCKKTS AEDDSGPWGK KTNGDSDAWG KEAVSSVDGD STPWGKETVP SAAGDSDPWG KKVVSSADGD SDPWGKKAAS SAVEVWNTSA
0801: IQKEGSSSNA WDKQAGVGGS DAAGSSWDRA VVNKESAKSD NWGEACRVMD MGTGADTDPW GSKVKAVDVE GPNSWEKATV PPDSKLEDAS QGWGQPKGNS
0901: TEDQTKDNVS KDVDNNRAWG SSLPVTEDGT WGKSKDNTCD GAGGAGGWDA SAANWTKSSV AGDAQNEGWG KGNWSSAKSE ETNNDIGNWN KAGASDQAGD
1001: SNWDKPKSFG GDGWNKGDDQ NSSWNRPGNF GGRGFGRGRG RDRGQESGDF NVRNDQRSWK NSWGGDNAER PSWRSDNQVD NEGGSGGYRG RGRGGRGQYG
1101: GRGRDNGWRN GDRSDSVFGR ESNSGDGAKW GGGGNWNATN PPSNQPWSSS GGTKSYGQNQ PSTLNNSEDN KQSVGEQGDP WASRVSATEG KEQQNDPWSS
1201: KMTSGGAEDT SGGWDTKAKD SSFNDGGEGL QNDPWANKIG SNEGKEQEND PWASKMSSTV GADDRNGSWN TTAKSTPSKE EADDRWNRKG GNDDSKKTDT
1301: WGAGSSGGNQ ESSWSKPNFS LGDQEPTWNN SRFGDDDNGN NRGGFGRGNR GRGRGRNFGD GGGSSWNGGN RNDESGGGRS GEPWNRRDFD GGRGRGRGRF
1401: GRGDRNQGNN FGSGDGGSWG SGRGDGGSWG SGAGDGGSWG SGRGNGGRSG YRNWNTSGGD DQAGKSNANN SWSQNRSSPS ILGQPSGDAN KSSTWGAPSG
1501: AAGGGGSWGK SNEDNWNPSG GSAKEKPSWG GGSGAPPKKE DGGAEGSGSQ GGGTGSTWDK AADGGTGSTW DKAADGAWNG NKGTDTGSGG W
0001: MDRKGKGKQV AGSDSYSGGQ KRKNSVEFRD EGLRIKKRKN PEVLQFFEES AEVGYYGGSS DEDDDGLGFL NDMEDEPEVE ESSKAGKGEK GKSSFVFPKE
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSNPWGGSKP TSDVSPTVAD DNTSAWANAA AENKPASASD QPGGWNPWGK TPASEAGTVS GWGDTSASNV EASSWEKQGA STSNVADLGS
0801: WGTHGGSSGG NKQDEDSVWG KLCEASESSQ KKEESSWGKK GGSDGESSWG NKDGNSSASK KDGVSWGQQD KGSDESKGGS AWSNQCGDFG SGKKKDGSSG
0901: WNKSAEDSNA NSKGVPDWGQ PNDGSSWGKK GDGAASWGKK DDGGSWGKKD DGNKDDGGSS WGKKDDGQKD DGGSSWEKKF DGGSSWGKKD DGGSSWGKKD
1001: DGGSLWGKKD DGGSSWGKED DGGSLWGKKD DGESSWGKKD DGESSWGKKD DGGSSWGKKD EGGYSEQTFD RGGRGFGGRR GGGRRGGRDQ FGRGSSFGNS
1101: EDPAPWSKPS GGSSWGKQDG DGGGSSWGKE NDAGGGSSWG KQDNGVGSSW GKQNDGSGGG SSWGKQNDAG GGSSWGKQDS GGDGSSWGKQ DGGGDSGSAW
1201: GKQNNTSGGS SWGKQSDAGG GSSWGKQDGG GGGSSWGKQD GGGGSGSAWG KQNETSNGSS WGKQNDSGGG SSWGKQDGGG GGSSWGKQND GGGGSSWGKQ
1301: GDGGSKPWNE HSGGGRGFGE RRGGGGFRGG RNQSGRGGRS FDGGRSSSWK TDNQENTWKS DQSGGSDWKK GWGEDSNNSK PSGSSAGGCA GNWPSWDTNS
1401: KKETNDKPGD DSKSAWGTSN DQVNTDNNND SWNKKPNNDV GTSGEADNAW GGKTNAVAPS PSGSAAWGTG DKKTGW
0101: EDLNEEEFDR IMEERYKPGS GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE IISVFSVDHV KGFIFIEADK
0201: EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA
0301: PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK
0401: GEGSGGGKGE GSGGGKGEGS RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK KEMQNGPFDS KFTALDLNKK
0501: QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN
0601: QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG
0701: GNWNIGGPST DSNPWGGSKP TSDVSPTVAD DNTSAWANAA AENKPASASD QPGGWNPWGK TPASEAGTVS GWGDTSASNV EASSWEKQGA STSNVADLGS
0801: WGTHGGSSGG NKQDEDSVWG KLCEASESSQ KKEESSWGKK GGSDGESSWG NKDGNSSASK KDGVSWGQQD KGSDESKGGS AWSNQCGDFG SGKKKDGSSG
0901: WNKSAEDSNA NSKGVPDWGQ PNDGSSWGKK GDGAASWGKK DDGGSWGKKD DGNKDDGGSS WGKKDDGQKD DGGSSWEKKF DGGSSWGKKD DGGSSWGKKD
1001: DGGSLWGKKD DGGSSWGKED DGGSLWGKKD DGESSWGKKD DGESSWGKKD DGGSSWGKKD EGGYSEQTFD RGGRGFGGRR GGGRRGGRDQ FGRGSSFGNS
1101: EDPAPWSKPS GGSSWGKQDG DGGGSSWGKE NDAGGGSSWG KQDNGVGSSW GKQNDGSGGG SSWGKQNDAG GGSSWGKQDS GGDGSSWGKQ DGGGDSGSAW
1201: GKQNNTSGGS SWGKQSDAGG GSSWGKQDGG GGGSSWGKQD GGGGSGSAWG KQNETSNGSS WGKQNDSGGG SSWGKQDGGG GGSSWGKQND GGGGSSWGKQ
1301: GDGGSKPWNE HSGGGRGFGE RRGGGGFRGG RNQSGRGGRS FDGGRSSSWK TDNQENTWKS DQSGGSDWKK GWGEDSNNSK PSGSSAGGCA GNWPSWDTNS
1401: KKETNDKPGD DSKSAWGTSN DQVNTDNNND SWNKKPNNDV GTSGEADNAW GGKTNAVAPS PSGSAAWGTG DKKTGW
Arabidopsis Description
RDM3Protein RNA-directed DNA methylation 3 [Source:UniProtKB/Swiss-Prot;Acc:F4JW79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.